Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005472

Physical Location & Seq

Genomic Coordinates Reverse (-)

39887396 .. 39893680

Gene Structure 6285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G019940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGGCATTTTGGTGCAGCAGACTCACCCAATCTAAGCTCAGGCAAATAGCCCATCACTCTAAGACCATTCCTTATGCTTCTTCTCTGCTTAACCCCACTGCTTCCAAGCCATGCGTTTCAGACAACCCATTGATCTCTCACCCTGATTTTATTTTTGCCAGTAAAGTTAGGTTCTTTGCTGCCCCAGTTCAGGCAAATGCAAATGCAAAGAAGACAGAGCAGGGCACGAGTGGTCCGCGGTTGAATGAGCATATCAGAGCCAATGTTGTTAGGCTTGTTATGGGCGAAGAACATTTTATCATCTCAAAGAGTGAAGCTCTGGAACGTGCCAGGAATCTTGAGCTTGATTTAGTCGAGGTTCAGGGCACAGCTAATCCTCCTGTTTGTAAAATCATGGATTACCATAAAGAGAAGTATAAAAAAGAAACAAGGGAGAAAGAGCAGATTAAAATCAAGGAAGTTAAGACTTTGCGTGCAGATACTAAGGAAGTCAAGTTTTCTCCAAAGACTGAGGCAAAGGATCTCAAGATGAAAGCAGACATGGTGAAGAGATTTATGGACAAGGGTTACCGGGTGAAGTGTACTGCCTCGGATTCTGAGGGTCGGGACTTGGGAGCAGTTTTCTCTCGTCTCATTGCGCTGATAGAAGACACAGCGTATATCGAATGTGAACCTATGGTAGGAAGAGGAAAAGAGTCATTCATAATGGTCAGGCATGTGAAGTTTGGCGCACCAAAGAGTGGTGGGAAAAAAACAAAGGCTGAAAACAAAAAAAGCCCTGAGAAGGGTAGTGGTGATGGTATTGGGGTTACTACCAGAGCAGACACAGTTCCACTTCCTCCACAAGAATCTTCTGGTGTGGCTGAAAATAGGTACAGAAATACTGAGGTTTCACCAACAAGAGAAATGGATAGTAAGAGAGAAACTCCCAATAACAGAGAAATCCCAATTTCACATTTCTCACCATCAATGAGAGAGCAGCATATTCCATATCATAGAAGAGAAGCACCTACAAACGTGCACTTCTCATCGCCAACAAGAGAAACCAACAGAGCTGCTCCATCGGCATTTAGAAACTCTGCTCAGCTTCCTAACAGTATTCCCAAGCAAGAACCATCTAATCCTAATCCTCCCCGTTCTCCAGGACTCAAGCAAGAACCATCTAGTCCTAATCCTCCTCGTTCTCGTCCTCCAGGACTTGGTTATGGGATATTTAGCACCCCAACTGGTAATGGTTCCGCAAAACAAGGTGTGTCGGAAAGGTTTCCGGCAAATCCAAACTCACCAAGTTCAAGACCTTATAGTAGCCAAAGACCAGGAGCAGACATTGGTAAGGATGGACGGGGGATGGGGAATCTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022411 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IF3_C IF3_N

Protein Analysis

454

Amino Acids

50.34

Weight (kDa)

9.8

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF3_N	PF05198	82 - 148	1.2e-22	Translation initiation factor IF-3, N-terminal domain
IF3_C	PF00707	160 - 227	6e-08	Translation initiation factor IF-3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34360 AT1G34360 AT1G34360
fragaria_vesca	FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550
malus_domestica	MD05G1123900.v1.1 MD10G1126600.v1.1 MD10G1126800.v1.1
prunus_persica	Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1
pyrus_communis	pycom05g11810
rosa_chinensis	RchiOBHm_Chr6g0278721
rosa_laevigata	RLG00000013198
rosa_multiflora	Rmu_sc0000531.1_g000010
rosa_roxburghii	Rroxscaffold_7G00189680 Rroxscaffold_7G00189940
rosa_rugosa	Rorug06G0118400
rosa_samantha	Rh6AG227300 Rh6BG232800 Rh6CG234900 Rh6DG226500
rosa_wichuraiana	Rw6G019940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	740, 1199
AccII	CGCG	1 cut(s)	238
AciI	CCGC	3 cut(s)	236, 238, 1239
AclWI	GGATC	1 cut(s)	528
AfaI	GTAC	2 cut(s)	583, 875
AfiI	CCNNNNNNNGG	6 cut(s)	190, 680, 740, 784, 785, 1199
AgsI	TTSAA	2 cut(s)	244, 1293
AjnI	CCWGG	4 cut(s)	329, 1141, 1192, 1315
AluBI	AGCT	6 cut(s)	37, 317, 343, 371, 1055, 1087
AluI	AGCT	6 cut(s)	37, 317, 343, 371, 1055, 1087
Alw21I	GWGCWC	1 cut(s)	1023
Alw26I	GTCTC	1 cut(s)	635
Alw44I	GTGCAC	1 cut(s)	1019
AlwI	GGATC	1 cut(s)	528
ApaLI	GTGCAC	1 cut(s)	1019
ApeKI	GCWGC	4 cut(s)	15, 179, 979, 1055
Asp700I	GAANNNNTTC	1 cut(s)	1263
AspLEI	GCGC	2 cut(s)	640, 731
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	572
AsuHPI	GGTGA	8 cut(s)	16, 131, 556, 586, 806, 885, 954, 1275
AvaII	GGWCC	1 cut(s)	233
BaeGI	GKGCMC	3 cut(s)	227, 368, 1023
BauI	CACGAG	1 cut(s)	226
BbsI	GAAGAC	2 cut(s)	218, 654
Bbv12I	GWGCWC	1 cut(s)	1023
BbvI	GCAGC	4 cut(s)	27, 166, 991, 1042
BccI	CCATC	8 cut(s)	60, 791, 973, 1069, 1123, 1168, 1331, 1342
BciT130I	CCWGG	4 cut(s)	331, 1143, 1194, 1317
BcnI	CCSGG	1 cut(s)	572
BcoDI	GTCTC	1 cut(s)	635
BfaI	CTAG	1 cut(s)	1164
BisI	GCNGC	4 cut(s)	16, 180, 980, 1056
BlpI	GCTNAGC	1 cut(s)	1083
BlsI	GCNGC	4 cut(s)	17, 181, 981, 1057
Bme1390I	CCNGG	5 cut(s)	331, 572, 1143, 1194, 1317
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	1237
BmrFI	CCNGG	5 cut(s)	331, 572, 1143, 1194, 1317
BmrI	ACTGGG	1 cut(s)	179
BmuI	ACTGGG	1 cut(s)	179
BpiI	GAAGAC	2 cut(s)	218, 654
BplI	GAGNNNNNCTC	4 cut(s)	301, 333, 910, 942
BpmI	CTGGAG	2 cut(s)	1125, 1176
Bpu10I	CCTNAGC	1 cut(s)	38
Bpu1102I	GCTNAGC	1 cut(s)	1083
BpuEI	CTTGAG	3 cut(s)	359, 509, 1133
BpuMI	CCSGG	1 cut(s)	572
BsaBI	GATNNNNATC	1 cut(s)	449
BsaJI	CCNNGG	2 cut(s)	236, 588
Bsc4I	CCNNNNNNNGG	6 cut(s)	190, 680, 740, 784, 785, 1199
Bse1I	ACTGG	3 cut(s)	159, 185, 1231
Bse3DI	GCAATG	1 cut(s)	633
Bse8I	GATNNNNATC	1 cut(s)	449
BseBI	CCWGG	4 cut(s)	331, 1143, 1194, 1317
BseDI	CCNNGG	2 cut(s)	236, 588
BseGI	GGATG	2 cut(s)	1342, 1353
BseJI	GATNNNNATC	1 cut(s)	449
BseLI	CCNNNNNNNGG	6 cut(s)	190, 680, 740, 784, 785, 1199
BseMI	GCAATG	1 cut(s)	633
BseMII	CTCAG	6 cut(s)	52, 501, 588, 771, 876, 1097
BseNI	ACTGG	3 cut(s)	159, 185, 1231
BseRI	GAGGAG	1 cut(s)	1167
BseSI	GKGCMC	3 cut(s)	227, 368, 1023
BseXI	GCAGC	4 cut(s)	27, 166, 991, 1042
BsgI	GTGCAG	2 cut(s)	34, 495
Bsh1236I	CGCG	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	1023
BsiSI	CCGG	2 cut(s)	571, 1268
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	6 cut(s)	190, 680, 740, 784, 785, 1199
BsmAI	GTCTC	1 cut(s)	635
BsmBI	CGTCTC	1 cut(s)	635
BsmFI	GGGAC	1 cut(s)	620
Bsp1286I	GDGCHC	3 cut(s)	227, 368, 1023
Bsp143I	GATC	2 cut(s)	132, 520
Bsp1720I	GCTNAGC	1 cut(s)	1083
BspACI	CCGC	3 cut(s)	236, 238, 1239
BspCNI	CTCAG	6 cut(s)	51, 502, 589, 772, 877, 1096
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	1237
BspPI	GGATC	1 cut(s)	528
BsrDI	GCAATG	1 cut(s)	633
BsrI	ACTGG	3 cut(s)	159, 185, 1231
BssECI	CCNNGG	2 cut(s)	236, 588
BssMI	GATC	2 cut(s)	132, 520
BssSI	CACGAG	1 cut(s)	226
Bst2BI	CACGAG	1 cut(s)	226
Bst2UI	CCWGG	4 cut(s)	331, 1143, 1194, 1317
Bst4CI	ACNGT	2 cut(s)	829, 1097
Bst6I	CTCTTC	3 cut(s)	542, 679, 994
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	9 cut(s)	33, 38, 60, 483, 510, 597, 780, 885, 1083
BstDSI	CCRYGG	1 cut(s)	236
BstEII	GGTNACC	1 cut(s)	566
BstENI	CCTNNNNNAGG	1 cut(s)	678
BstF5I	GGATG	2 cut(s)	1342, 1353
BstFNI	CGCG	1 cut(s)	238
BstHHI	GCGC	2 cut(s)	640, 731
BstKTI	GATC	2 cut(s)	135, 523
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	2 cut(s)	132, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	1064
BstNI	CCWGG	4 cut(s)	331, 1143, 1194, 1317
BstNSI	RCATGY	1 cut(s)	719
BstPI	GGTNACC	1 cut(s)	566
BstSCI	CCNGG	5 cut(s)	329, 570, 1141, 1192, 1315
BstSLI	GKGCMC	3 cut(s)	227, 368, 1023
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	4 cut(s)	27, 166, 991, 1042
BstV2I	GAAGAC	2 cut(s)	218, 654
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
BtgI	CCRYGG	1 cut(s)	236
BtgZI	GCGATG	1 cut(s)	1014
BtsCI	GGATG	2 cut(s)	1342, 1353
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	474
CfoI	GCGC	2 cut(s)	640, 731
Cfr13I	GGNCC	1 cut(s)	233
Cfr42I	CCGCGG	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	582, 874
CviAII	CATG	4 cut(s)	111, 394, 541, 716
CviQI	GTAC	2 cut(s)	582, 874
DdeI	CTNAG	9 cut(s)	33, 38, 60, 483, 510, 597, 780, 885, 1083
DpnI	GATC	2 cut(s)	134, 522
DpnII	GATC	2 cut(s)	132, 520
Eam1104I	CTCTTC	3 cut(s)	542, 679, 994
EarI	CTCTTC	3 cut(s)	542, 679, 994
Eco47I	GGWCC	1 cut(s)	233
Eco91I	GGTNACC	1 cut(s)	566
EcoNI	CCTNNNNNAGG	1 cut(s)	678
EcoO65I	GGTNACC	1 cut(s)	566
EcoRII	CCWGG	4 cut(s)	329, 1141, 1192, 1315
Esp3I	CGTCTC	1 cut(s)	635
FaeI	CATG	4 cut(s)	114, 397, 544, 719
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	4 cut(s)	110, 393, 540, 715
Fnu4HI	GCNGC	4 cut(s)	16, 180, 980, 1056
FokI	GGATG	2 cut(s)	1349, 1360
Fsp4HI	GCNGC	4 cut(s)	16, 180, 980, 1056
FspBI	CTAG	1 cut(s)	1164
GlaI	GCGC	2 cut(s)	639, 730
GluI	GCNGC	4 cut(s)	16, 180, 980, 1056
GsuI	CTGGAG	2 cut(s)	1125, 1176
HapII	CCGG	2 cut(s)	571, 1268
HhaI	GCGC	2 cut(s)	640, 731
Hin1II	CATG	4 cut(s)	114, 397, 544, 719
Hin6I	GCGC	2 cut(s)	638, 729
HinP1I	GCGC	2 cut(s)	638, 729
HinfI	GANTC	7 cut(s)	21, 334, 593, 695, 848, 1146, 1354
HpaII	CCGG	2 cut(s)	571, 1268
HphI	GGTGA	8 cut(s)	16, 131, 556, 586, 806, 885, 954, 1275
Hpy166II	GTNNAC	3 cut(s)	582, 671, 1021
Hpy188I	TCNGA	5 cut(s)	121, 257, 592, 598, 1258
Hpy188III	TCNNGA	5 cut(s)	320, 338, 526, 605, 1293
Hpy8I	GTNNAC	3 cut(s)	582, 671, 1021
HpyAV	CCTTC	1 cut(s)	778
HpyCH4III	ACNGT	2 cut(s)	829, 1097
HpyCH4IV	ACGT	2 cut(s)	325, 1017
HpyCH4V	TGCA	5 cut(s)	15, 200, 206, 476, 1021
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1064
HpyF3I	CTNAG	9 cut(s)	33, 38, 60, 483, 510, 597, 780, 885, 1083
HpySE526I	ACGT	2 cut(s)	325, 1017
Hsp92II	CATG	4 cut(s)	114, 397, 544, 719
HspAI	GCGC	2 cut(s)	638, 729
KspI	CCGCGG	1 cut(s)	239
Kzo9I	GATC	2 cut(s)	132, 520
LmnI	GCTCC	3 cut(s)	614, 1063, 1319
Lsp1109I	GCAGC	4 cut(s)	27, 166, 991, 1042
MaeI	CTAG	1 cut(s)	1164
MaeII	ACGT	2 cut(s)	325, 1017
MaeIII	GTNAC	2 cut(s)	566, 808
MalI	GATC	2 cut(s)	134, 522
MboI	GATC	2 cut(s)	132, 520
MboII	GAAGA	8 cut(s)	72, 223, 299, 559, 659, 696, 843, 1011
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	3 cut(s)	227, 368, 1023
MluCI	AATT	1 cut(s)	948
MlyI	GAGTC	3 cut(s)	15, 704, 1140
MmeI	TCCRAC	1 cut(s)	1236
MroXI	GAANNNNTTC	1 cut(s)	1263
MseI	TTAA	3 cut(s)	90, 447, 462
MslI	CAYNNNNRTG	1 cut(s)	10
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	2 cut(s)	571, 1268
MspR9I	CCNGG	5 cut(s)	331, 572, 1143, 1194, 1317
MvaI	CCWGG	4 cut(s)	331, 1143, 1194, 1317
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	1 cut(s)	1064
NciI	CCSGG	1 cut(s)	572
NdeII	GATC	2 cut(s)	132, 520
NlaIII	CATG	4 cut(s)	114, 397, 544, 719
NlaIV	GGNNCC	1 cut(s)	1237
NspI	RCATGY	1 cut(s)	719
PdmI	GAANNNNTTC	1 cut(s)	1263
PfeI	GAWTC	4 cut(s)	334, 593, 848, 1354
PflMI	CCANNNNNTGG	2 cut(s)	740, 1199
PfoI	TCCNGGA	2 cut(s)	1141, 1192
PkrI	GCNGC	4 cut(s)	17, 181, 981, 1057
PleI	GAGTC	3 cut(s)	15, 703, 1140
PpsI	GAGTC	3 cut(s)	15, 703, 1140
Psp6I	CCWGG	4 cut(s)	329, 1141, 1192, 1315
PspEI	GGTNACC	1 cut(s)	566
PspGI	CCWGG	4 cut(s)	329, 1141, 1192, 1315
PspN4I	GGNNCC	1 cut(s)	1237
PspPI	GGNCC	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	520
RsaI	GTAC	2 cut(s)	583, 875
RsaNI	GTAC	2 cut(s)	582, 874
RseI	CAYNNNNRTG	1 cut(s)	10
SacII	CCGCGG	1 cut(s)	239
SaqAI	TTAA	3 cut(s)	90, 447, 462
SatI	GCNGC	4 cut(s)	16, 180, 980, 1056
Sau3AI	GATC	2 cut(s)	132, 520
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	3 cut(s)	15, 704, 1140
ScrFI	CCNGG	5 cut(s)	331, 572, 1143, 1194, 1317
SduI	GDGCHC	3 cut(s)	227, 368, 1023
Sfr303I	CCGCGG	1 cut(s)	239
SgrBI	CCGCGG	1 cut(s)	239
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	10
SmlI	CTYRAG	3 cut(s)	338, 524, 1148
SmoI	CTYRAG	3 cut(s)	338, 524, 1148
Sse9I	AATT	1 cut(s)	948
SsiI	CCGC	3 cut(s)	236, 238, 1239
SspMI	CTAG	1 cut(s)	1164
StyD4I	CCNGG	5 cut(s)	329, 570, 1141, 1192, 1315
TaaI	ACNGT	2 cut(s)	829, 1097
TaiI	ACGT	2 cut(s)	328, 1020
TaqI	TCGA	2 cut(s)	354, 663
TasI	AATT	1 cut(s)	948
TatI	WGTACW	1 cut(s)	581
TfiI	GAWTC	4 cut(s)	334, 593, 848, 1354
Tru1I	TTAA	3 cut(s)	90, 447, 462
Tru9I	TTAA	3 cut(s)	90, 447, 462
TscAI	CASTG	1 cut(s)	103
TseI	GCWGC	4 cut(s)	15, 179, 979, 1055
TspDTI	ATGAA	2 cut(s)	545, 691
TspRI	CASTG	1 cut(s)	103
Van91I	CCANNNNNTGG	2 cut(s)	740, 1199
VneI	GTGCAC	1 cut(s)	1019
VpaK11BI	GGWCC	1 cut(s)	233
XagI	CCTNNNNNAGG	1 cut(s)	678
XceI	RCATGY	1 cut(s)	719
XmnI	GAANNNNTTC	1 cut(s)	1263
XspI	CTAG	1 cut(s)	1164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.