Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005472

Physical Location & Seq

Genomic Coordinates Forward (+)

27551021 .. 27556459

Gene Structure 5439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013198

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGATTACCATAAAGAGAAGTATAAAAAAGAAACAAGGGAGAAAGAGCAGAGTAAAATCAAGTCTAAGGAAGTTAAGACTTTGCGTGCAGATACTAAGGAAGTCAAGTTTTCTCCAAAGACTGAGGCAAAGGATCTCAAGATGAAAGCAGACATGGTGAAGAGATTTATGGACAAGGGTTACCGGGTGAAGTGTACTGCCTCGGATTCTGAGGGTCGGGACTTGGGAGCAGTTTTCTCTCGTCTCATTGCGCTGATAGAAGAGACAGCGTATATCGAATGTGAACCTACGGTAGGAAGAGGAAAAGAGTCATTCATAATGGTCAGGCATGTGAAGTTTGGCCCACCAAAGAGTGGTGGGAAAAAAACAAAGGCTGAAAACAAAAAAAGCCCTGAGAAAGGTAGTGGTGATGGTATTGGGGTTACTACAAGAGCAGACACAGTTCCACTTCCTCCACAAGAATCTTCTGTTGTGGCTGAAAAGAGGTACAGAAATACTGAGGTTTCACCAACAAGAGAAATGGATAGTAAGAGAGAAACTCCCAATAACAGAGAAATCCCAATTTCACATTTCTCACTATCAATGAGAGAGCAGCATATTCCATATCAAAGAAGAGAAGTGCCTACAAACATGCACTTCTCATCGCCAACAAGAGAAACCAACAGAGCTGCTCCATCGGCATTTAGAAACTCTGCTCAGCTTCCTAACAGTATTCCCAAGCAAGAACCATCTAATCCTAATCCTCCCCGTTCTGCAGGGCTCAGGCAAGAACCATCCAGTCCTAATCCTCCTCGTTCTCGTCCTCCAGGACTTGGTTATGGGATATTTAGCACCCCAACTGGTAATGGTTCCGCAAAACAAGGTGTGTCGGAAAGGTTTCCGGCAAATCCAAACTCACCAAGTTCAAGACCTTATAGTAGCCAAAGACCAGGAACAGACATGGGTAAGGATGGACGGGGGATGGAGAATCTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022411 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IF3_C IF3_N

Protein Analysis

326

Amino Acids

36.29

Weight (kDa)

9.87

Isoelectric Point (pI)

59.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF3_C	PF00707	31 - 98	3.2e-08	Translation initiation factor IF-3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34360 AT1G34360 AT1G34360
fragaria_vesca	FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550
malus_domestica	MD05G1123900.v1.1 MD10G1126600.v1.1 MD10G1126800.v1.1
prunus_persica	Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1
pyrus_communis	pycom05g11810
rosa_chinensis	RchiOBHm_Chr6g0278721
rosa_laevigata	RLG00000013198
rosa_multiflora	Rmu_sc0000531.1_g000010
rosa_roxburghii	Rroxscaffold_7G00189680 Rroxscaffold_7G00189940
rosa_rugosa	Rorug06G0118400
rosa_samantha	Rh6AG227300 Rh6BG232800 Rh6CG234900 Rh6DG226500
rosa_wichuraiana	Rw6G019940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	353, 812
AciI	CCGC	1 cut(s)	852
AclWI	GGATC	1 cut(s)	141
AfaI	GTAC	2 cut(s)	196, 488
AfiI	CCNNNNNNNGG	4 cut(s)	293, 353, 398, 812
AgsI	TTSAA	1 cut(s)	906
AjnI	CCWGG	2 cut(s)	805, 928
AluBI	AGCT	2 cut(s)	668, 700
AluI	AGCT	2 cut(s)	668, 700
Alw26I	GTCTC	2 cut(s)	248, 257
AlwI	GGATC	1 cut(s)	141
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	2 cut(s)	592, 668
Asp700I	GAANNNNTTC	1 cut(s)	876
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	341
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	5 cut(s)	169, 199, 419, 498, 888
BanII	GRGCYC	1 cut(s)	762
BbvI	GCAGC	2 cut(s)	604, 655
BccI	CCATC	6 cut(s)	404, 682, 736, 781, 944, 955
BciT130I	CCWGG	2 cut(s)	807, 930
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	2 cut(s)	248, 257
BfmI	CTRYAG	1 cut(s)	753
BisI	GCNGC	2 cut(s)	593, 669
BlpI	GCTNAGC	1 cut(s)	696
BlsI	GCNGC	2 cut(s)	594, 670
Bme1390I	CCNGG	3 cut(s)	185, 807, 930
BmgT120I	GGNCC	1 cut(s)	341
BmiI	GGNNCC	1 cut(s)	850
BmrFI	CCNGG	3 cut(s)	185, 807, 930
BplI	GAGNNNNNCTC	2 cut(s)	523, 555
BpmI	CTGGAG	1 cut(s)	789
Bpu10I	CCTNAGC	1 cut(s)	761
Bpu1102I	GCTNAGC	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	4 cut(s)	293, 353, 398, 812
Bse1I	ACTGG	2 cut(s)	777, 844
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	807, 930
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	3 cut(s)	773, 955, 966
BseLI	CCNNNNNNNGG	4 cut(s)	293, 353, 398, 812
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	6 cut(s)	114, 201, 384, 489, 710, 775
BseNI	ACTGG	2 cut(s)	777, 844
BseRI	GAGGAG	1 cut(s)	780
BseXI	GCAGC	2 cut(s)	604, 655
BsgI	GTGCAG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	184, 881
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	4 cut(s)	293, 353, 398, 812
BsmAI	GTCTC	2 cut(s)	248, 257
BsmBI	CGTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	762
Bsp143I	GATC	1 cut(s)	133
Bsp1720I	GCTNAGC	1 cut(s)	696
BspACI	CCGC	1 cut(s)	852
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	6 cut(s)	115, 202, 385, 490, 709, 774
BspLI	GGNNCC	1 cut(s)	850
BspMAI	CTGCAG	1 cut(s)	757
BspPI	GGATC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	777, 844
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	1 cut(s)	133
Bst2UI	CCWGG	2 cut(s)	807, 930
Bst4CI	ACNGT	3 cut(s)	292, 442, 710
Bst6I	CTCTTC	4 cut(s)	155, 255, 292, 607
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	8 cut(s)	66, 96, 123, 210, 393, 498, 696, 761
BstEII	GGTNACC	1 cut(s)	179
BstENI	CCTNNNNNAGG	2 cut(s)	291, 396
BstF5I	GGATG	3 cut(s)	773, 955, 966
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	2 cut(s)	248, 257
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	677
BstNI	CCWGG	2 cut(s)	807, 930
BstNSI	RCATGY	2 cut(s)	332, 634
BstPI	GGTNACC	1 cut(s)	179
BstSCI	CCNGG	3 cut(s)	183, 805, 928
BstSFI	CTRYAG	1 cut(s)	753
BstV1I	GCAGC	2 cut(s)	604, 655
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	342
BtgZI	GCGATG	1 cut(s)	627
BtsCI	GGATG	3 cut(s)	773, 955, 966
Cac8I	GCNNGC	1 cut(s)	87
CfoI	GCGC	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	341
Csp6I	GTAC	2 cut(s)	195, 487
CviAII	CATG	4 cut(s)	154, 329, 631, 940
CviJI	RGCY	8 cut(s)	342, 374, 390, 476, 668, 700, 760, 921
CviKI_1	RGCY	8 cut(s)	342, 374, 390, 476, 668, 700, 760, 921
CviQI	GTAC	2 cut(s)	195, 487
DdeI	CTNAG	8 cut(s)	66, 96, 123, 210, 393, 498, 696, 761
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	4 cut(s)	155, 255, 292, 607
EarI	CTCTTC	4 cut(s)	155, 255, 292, 607
Eco24I	GRGCYC	1 cut(s)	762
Eco91I	GGTNACC	1 cut(s)	179
EcoNI	CCTNNNNNAGG	2 cut(s)	291, 396
EcoO65I	GGTNACC	1 cut(s)	179
EcoRII	CCWGG	2 cut(s)	805, 928
EcoT38I	GRGCYC	1 cut(s)	762
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	4 cut(s)	157, 332, 634, 943
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	4 cut(s)	153, 328, 630, 939
Fnu4HI	GCNGC	2 cut(s)	593, 669
FokI	GGATG	3 cut(s)	760, 962, 973
FriOI	GRGCYC	1 cut(s)	762
Fsp4HI	GCNGC	2 cut(s)	593, 669
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	2 cut(s)	593, 669
GsuI	CTGGAG	1 cut(s)	789
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	2 cut(s)	184, 881
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	4 cut(s)	157, 332, 634, 943
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HinfI	GANTC	4 cut(s)	206, 308, 461, 967
HpaII	CCGG	2 cut(s)	184, 881
HphI	GGTGA	5 cut(s)	169, 199, 419, 498, 888
Hpy166II	GTNNAC	2 cut(s)	195, 284
Hpy188I	TCNGA	3 cut(s)	205, 211, 871
Hpy188III	TCNNGA	3 cut(s)	139, 218, 906
Hpy8I	GTNNAC	2 cut(s)	195, 284
HpyCH4III	ACNGT	3 cut(s)	292, 442, 710
HpyCH4V	TGCA	3 cut(s)	89, 634, 755
HpyF10VI	GCNNNNNNNGC	1 cut(s)	677
HpyF3I	CTNAG	8 cut(s)	66, 96, 123, 210, 393, 498, 696, 761
Hsp92II	CATG	4 cut(s)	157, 332, 634, 943
HspAI	GCGC	1 cut(s)	251
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	2 cut(s)	227, 676
Lsp1109I	GCAGC	2 cut(s)	604, 655
MaeIII	GTNAC	2 cut(s)	179, 421
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	5 cut(s)	172, 272, 309, 456, 624
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	762
MluCI	AATT	1 cut(s)	561
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	849
MroXI	GAANNNNTTC	1 cut(s)	876
MseI	TTAA	1 cut(s)	75
MspI	CCGG	2 cut(s)	184, 881
MspR9I	CCNGG	3 cut(s)	185, 807, 930
MvaI	CCWGG	2 cut(s)	807, 930
MwoI	GCNNNNNNNGC	1 cut(s)	677
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	4 cut(s)	157, 332, 634, 943
NlaIV	GGNNCC	1 cut(s)	850
NspI	RCATGY	2 cut(s)	332, 634
PdmI	GAANNNNTTC	1 cut(s)	876
PfeI	GAWTC	3 cut(s)	206, 461, 967
PflMI	CCANNNNNTGG	2 cut(s)	353, 812
PfoI	TCCNGGA	1 cut(s)	805
PkrI	GCNGC	2 cut(s)	594, 670
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
Psp6I	CCWGG	2 cut(s)	805, 928
PspEI	GGTNACC	1 cut(s)	179
PspGI	CCWGG	2 cut(s)	805, 928
PspN4I	GGNNCC	1 cut(s)	850
PspPI	GGNCC	1 cut(s)	341
PstI	CTGCAG	1 cut(s)	757
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	2 cut(s)	196, 488
RsaNI	GTAC	2 cut(s)	195, 487
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	2 cut(s)	593, 669
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	1 cut(s)	341
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	3 cut(s)	185, 807, 930
SduI	GDGCHC	1 cut(s)	762
SetI	ASST	9 cut(s)	289, 403, 488, 504, 670, 702, 865, 878, 913
SfcI	CTRYAG	1 cut(s)	753
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	561
SsiI	CCGC	1 cut(s)	852
StyD4I	CCNGG	3 cut(s)	183, 805, 928
TaaI	ACNGT	3 cut(s)	292, 442, 710
TaqI	TCGA	1 cut(s)	276
TasI	AATT	1 cut(s)	561
TatI	WGTACW	1 cut(s)	194
TfiI	GAWTC	3 cut(s)	206, 461, 967
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseI	GCWGC	2 cut(s)	592, 668
TspDTI	ATGAA	2 cut(s)	158, 304
Van91I	CCANNNNNTGG	2 cut(s)	353, 812
XagI	CCTNNNNNAGG	2 cut(s)	291, 396
XceI	RCATGY	2 cut(s)	332, 634
XmnI	GAANNNNTTC	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.