pycom05g11810

Translation initiation factor IF-3, N-terminal domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
15363031 .. 15368260
5230 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g11810.2

Sequence Viewer

Length: 1653 bp
ATGGGCCTAAAAGTAAGCCCACATTCTAATCTAACCAGGCCATTTGATAACCTGACATTCGCCCCGAATCCCCTCTCGCTCGCTCGCTCGCTCTCGCTCTCTCTCTGTAATCTCAATGCCACAGTCCGATATGTGAAACCAGAAAAAAAAAAGATGGCGTTTTGGAGTAGAATCCGGCAGTCGAAGCTGCGGCAGTTTTCCTACCAGTTCAAGGCTATCCCTTATGCCTCTTTGATCAACCCGACTGCTGTACATTTGAAAGCATGCGTCTCAGAAATCCCACATTTGATCCCTCACGGTAGACCAACGGATTTCGGCAGTAAAGTCAGGTTCTTTGCTGCTCCCGTCCAGTTTCAAACAAATACAAAGAAGGTAGAGCAGAGCACGAGCGGTCCGCGATTGAATGAGAAGATTACTGCTGAGTTCGTTAGGCTTGTGTTGGATGAAGAGCATTTTATTGTCTCAAGGCGTGAAGCTCTGGAACGGGCAAGGACACTCGACCTTGATTTAGTTGAGGTTGAAGCCAGGGCTGATCCTCCTGTTTGTAAAATCATGGATTTCCACAAAGAGAAGTACAAAAAGGAATTAAGGGAGAAAGAGAAGCTTAAAATTAAGTCTGACAAGATTTTGCGAGCAGATTCTAAGGAAGTGAAGTTTTCTCCAAAAACTGAAGCTAAGGACCTAAAGATGAAAGCTGATATGGTGAAGAGATTTATGGAGAAAGGTTACCGGGTGAAGTGTACTGCCTCGGATGCTGAGAATAAGGACTTAGGAGAATTGTTTTCTCGTCTCACTGTGTTGATAGAAGATGTAGCTCTCATCGAATGTGAGCCAACGCTAGGAAAAGGAAAAGAGGCATTTATAATCGTCAGGCATGTGAAGTTTGGCCCATCAAAGAAGGGCGGTGCAAAAAAAACAAAGACTGTTGAAAAAACTAGCCCTGAGGCTGAAAAGAAGGGTAGTGAGGATGCAAGTGGCGTTACTTCACAGGTTGATAATTCGACTGTTCCACAAAGAGCCTCCTCTCGGTCAGATATTAGTGATCCAGACACGTTGCATGTCACACCTACAAGAGCACGCACAACTCCACTGCCCTTGCGAGAATCCTCTTATGGGACTCAAAATAGGCACAGAAATAATGAGTCGAGGAATCCTTATTCGCCAACAAGAGGAATGGATAATAGGGGGGCGGGAATGAGAGAACCCCATACTTCATATCAAAGAACAGGAACACCAACTGACTTGCCCTTCTCACCAACAAGAGGAATGGATAATAGGGAACCGGGAATGAGAGAGCCCCATACTCCATATCAAAGAACAGGAACCCCGATGCCACCCTTCTCACCAGTGGGAGAACCCAGGCAAGCTCAGACGAATGCACCTGTATTTAGAAACTTGAATCCTCCTCCTAATGATATCCCCAAGCAAGAACCCTCAAGTCCTAGTGCTCCCCGTACTCCAGGACTTGGTTTTGGGATATTTAGCAATCCGAAAGGTGATGCTCCTGCTAGACAAGGTGTATCAGAAAGGATCCCATCAGATTCAAACTCGCCTGGTTCAAGACCTGATAGCAGCCAAAGACCAGGCAACAGCACAAGCACGGATAAGGTTGGACAACGAGGATTCGGGATCTTCAGTAGAGAGCTCAAGTGA

Protein Analysis

551

Amino Acids

61.38

Weight (kDa)

9.85

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 863
AccB7I CCANNNNNTGG 1 cut(s) 1466
AccBSI CCGCTC 1 cut(s) 390
AccI GTMKAC 1 cut(s) 301
AccII CGCG 1 cut(s) 397
AciI CCGC 5 cut(s) 190, 390, 395, 903, 1190
AclWI GGATC 6 cut(s) 283, 527, 1037, 1525, 1538, 1637
AcuI CTGAAG 2 cut(s) 690, 1618
AfaI GTAC 4 cut(s) 252, 575, 742, 1456
AfiI CCNNNNNNNGG 7 cut(s) 211, 839, 1026, 1113, 1169, 1262, 1466
AflIII ACRYGT 1 cut(s) 1050
AgsI TTSAA 9 cut(s) 211, 259, 356, 403, 521, 929, 1399, 1545, 1560
AjnI CCWGG 6 cut(s) 35, 524, 1358, 1459, 1552, 1582
AluBI AGCT 8 cut(s) 187, 476, 604, 674, 695, 815, 1367, 1645
AluI AGCT 8 cut(s) 187, 476, 604, 674, 695, 815, 1367, 1645
Alw21I GWGCWC 4 cut(s) 386, 1078, 1450, 1647
Alw26I GTCTC 3 cut(s) 274, 466, 794
AlwI GGATC 6 cut(s) 283, 527, 1037, 1525, 1538, 1637
AoxI GGCC 3 cut(s) 4, 38, 886
ApeKI GCWGC 3 cut(s) 187, 338, 1572
AspS9I GGNCC 4 cut(s) 4, 392, 679, 887
AsuC2I CCSGG 2 cut(s) 731, 1284
AsuHPI GGTGA 5 cut(s) 715, 745, 1245, 1335, 1508
AvaII GGWCC 2 cut(s) 392, 679
AxyI CCTNAGG 1 cut(s) 942
BamHI GGATCC 1 cut(s) 1530
BanII GRGCYC 2 cut(s) 1299, 1647
BauI CACGAG 1 cut(s) 385
Bbv12I GWGCWC 4 cut(s) 386, 1078, 1450, 1647
BbvI GCAGC 3 cut(s) 174, 325, 1584
BccI CCATC 3 cut(s) 148, 898, 1543
BciT130I CCWGG 6 cut(s) 37, 526, 1360, 1461, 1554, 1584
BclI TGATCA 1 cut(s) 234
BcnI CCSGG 2 cut(s) 731, 1284
BcoDI GTCTC 3 cut(s) 274, 466, 794
BfaI CTAG 4 cut(s) 839, 936, 1443, 1509
BisI GCNGC 4 cut(s) 188, 191, 339, 1573
BlsI GCNGC 4 cut(s) 189, 192, 340, 1574
Bme1390I CCNGG 8 cut(s) 37, 526, 731, 1284, 1360, 1461, 1554, 1584
Bme18I GGWCC 2 cut(s) 392, 679
BmgT120I GGNCC 4 cut(s) 4, 392, 679, 887
BmiI GGNNCC 3 cut(s) 1281, 1324, 1532
BmrFI CCNGG 8 cut(s) 37, 526, 731, 1284, 1360, 1461, 1554, 1584
BmsI GCATC 4 cut(s) 742, 958, 1320, 1489
BpmI CTGGAG 1 cut(s) 1443
Bpu10I CCTNAGC 1 cut(s) 675
BpuEI CTTGAG 3 cut(s) 448, 1420, 1631
BpuMI CCSGG 2 cut(s) 731, 1284
BsaJI CCNNGG 3 cut(s) 525, 747, 1358
Bsc4I CCNNNNNNNGG 7 cut(s) 211, 839, 1026, 1113, 1169, 1262, 1466
Bse1I ACTGG 3 cut(s) 205, 349, 1346
Bse21I CCTNAGG 1 cut(s) 942
BseBI CCWGG 6 cut(s) 37, 526, 1360, 1461, 1554, 1584
BseDI CCNNGG 3 cut(s) 525, 747, 1358
BseGI GGATG 3 cut(s) 448, 757, 973
BseLI CCNNNNNNNGG 7 cut(s) 211, 839, 1026, 1113, 1169, 1262, 1466
BseMII CTCAG 5 cut(s) 285, 411, 747, 933, 1382
BseNI ACTGG 3 cut(s) 205, 349, 1346
BseRI GAGGAG 2 cut(s) 1012, 1395
BseXI GCAGC 3 cut(s) 174, 325, 1584
Bsh1236I CGCG 1 cut(s) 397
BshFI GGCC 3 cut(s) 6, 40, 888
BsiHKAI GWGCWC 4 cut(s) 386, 1078, 1450, 1647
BsiSI CCGG 3 cut(s) 175, 730, 1283
BslFI GGGAC 1 cut(s) 1129
BslI CCNNNNNNNGG 7 cut(s) 211, 839, 1026, 1113, 1169, 1262, 1466
BsmAI GTCTC 3 cut(s) 274, 466, 794
BsmBI CGTCTC 2 cut(s) 274, 794
BsmFI GGGAC 1 cut(s) 1129
BsmI GAATGC 1 cut(s) 1381
BsnI GGCC 3 cut(s) 6, 40, 888
Bsp1286I GDGCHC 5 cut(s) 386, 1078, 1299, 1450, 1647
Bsp1407I TGTACA 1 cut(s) 250
Bsp143I GATC 6 cut(s) 234, 288, 532, 1042, 1530, 1629
BspACI CCGC 5 cut(s) 190, 390, 395, 903, 1190
BspANI GGCC 3 cut(s) 6, 40, 888
BspCNI CTCAG 5 cut(s) 284, 412, 748, 934, 1381
BspFNI CGCG 1 cut(s) 397
BspLI GGNNCC 3 cut(s) 1281, 1324, 1532
BspPI GGATC 6 cut(s) 283, 527, 1037, 1525, 1538, 1637
BspQI GCTCTTC 1 cut(s) 441
BsrBI CCGCTC 1 cut(s) 390
BsrGI TGTACA 1 cut(s) 250
BsrI ACTGG 3 cut(s) 205, 349, 1346
BssECI CCNNGG 3 cut(s) 525, 747, 1358
BssMI GATC 6 cut(s) 234, 288, 532, 1042, 1530, 1629
BssSI CACGAG 1 cut(s) 385
Bst2BI CACGAG 1 cut(s) 385
Bst2UI CCWGG 6 cut(s) 37, 526, 1360, 1461, 1554, 1584
Bst4CI ACNGT 5 cut(s) 124, 299, 796, 925, 1006
Bst6I CTCTTC 2 cut(s) 441, 701
BstAUI TGTACA 1 cut(s) 250
BstC8I GCNNGC 7 cut(s) 81, 85, 89, 265, 633, 1078, 1365
BstDEI CTNAG 8 cut(s) 271, 420, 642, 675, 756, 769, 942, 1368
BstEII GGTNACC 1 cut(s) 725
BstF5I GGATG 3 cut(s) 448, 757, 973
BstFNI CGCG 1 cut(s) 397
BstKTI GATC 6 cut(s) 237, 291, 535, 1045, 1533, 1632
BstMAI GTCTC 3 cut(s) 274, 466, 794
BstMBI GATC 6 cut(s) 234, 288, 532, 1042, 1530, 1629
BstMWI GCNNNNNNNGC 2 cut(s) 184, 752
BstNI CCWGG 6 cut(s) 37, 526, 1360, 1461, 1554, 1584
BstNSI RCATGY 3 cut(s) 267, 878, 1061
BstPI GGTNACC 1 cut(s) 725
BstSCI CCNGG 8 cut(s) 35, 524, 729, 1282, 1358, 1459, 1552, 1582
BstUI CGCG 1 cut(s) 397
BstV1I GCAGC 3 cut(s) 174, 325, 1584
BstX2I RGATCY 2 cut(s) 1530, 1629
BstYI RGATCY 2 cut(s) 1530, 1629
Bsu36I CCTNAGG 1 cut(s) 942
BsuRI GGCC 3 cut(s) 6, 40, 888
BtsCI GGATG 3 cut(s) 448, 757, 973
BtsI GCAGTG 1 cut(s) 1088
BtsIMutI CAGTG 3 cut(s) 792, 1088, 1353
Cac8I GCNNGC 7 cut(s) 81, 85, 89, 265, 633, 1078, 1365
Cfr13I GGNCC 4 cut(s) 4, 392, 679, 887
CpoI CGGWCCG 1 cut(s) 392
CseI GACGC 1 cut(s) 256
Csp6I GTAC 4 cut(s) 251, 574, 741, 1455
CspCI CAANNNNNGTGG 2 cut(s) 1077, 1112
CspI CGGWCCG 1 cut(s) 392
CviAII CATG 4 cut(s) 264, 553, 875, 1058
CviQI GTAC 4 cut(s) 251, 574, 741, 1455
DdeI CTNAG 8 cut(s) 271, 420, 642, 675, 756, 769, 942, 1368
DpnI GATC 6 cut(s) 236, 290, 534, 1044, 1532, 1631
DpnII GATC 6 cut(s) 234, 288, 532, 1042, 1530, 1629
Eam1104I CTCTTC 2 cut(s) 441, 701
EarI CTCTTC 2 cut(s) 441, 701
Ecl136II GAGCTC 1 cut(s) 1645
Eco24I GRGCYC 2 cut(s) 1299, 1647
Eco32I GATATC 1 cut(s) 1417
Eco47I GGWCC 2 cut(s) 392, 679
Eco53kI GAGCTC 1 cut(s) 1645
Eco57I CTGAAG 2 cut(s) 690, 1618
Eco81I CCTNAGG 1 cut(s) 942
Eco91I GGTNACC 1 cut(s) 725
EcoICRI GAGCTC 1 cut(s) 1645
EcoO109I RGGNCCY 1 cut(s) 679
EcoO65I GGTNACC 1 cut(s) 725
EcoRII CCWGG 6 cut(s) 35, 524, 1358, 1459, 1552, 1582
EcoRV GATATC 1 cut(s) 1417
EcoT38I GRGCYC 2 cut(s) 1299, 1647
Esp3I CGTCTC 2 cut(s) 274, 794
FaeI CATG 4 cut(s) 267, 556, 878, 1061
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FaqI GGGAC 1 cut(s) 1129
FatI CATG 4 cut(s) 263, 552, 874, 1057
FauI CCCGC 1 cut(s) 1183
FbaI TGATCA 1 cut(s) 234
FblI GTMKAC 1 cut(s) 301
Fnu4HI GCNGC 4 cut(s) 188, 191, 339, 1573
FokI GGATG 3 cut(s) 455, 764, 980
FriOI GRGCYC 2 cut(s) 1299, 1647
Fsp4HI GCNGC 4 cut(s) 188, 191, 339, 1573
FspBI CTAG 4 cut(s) 839, 936, 1443, 1509
GluI GCNGC 4 cut(s) 188, 191, 339, 1573
GsuI CTGGAG 1 cut(s) 1443
HaeIII GGCC 3 cut(s) 6, 40, 888
HapII CCGG 3 cut(s) 175, 730, 1283
HgaI GACGC 1 cut(s) 256
Hin1II CATG 4 cut(s) 267, 556, 878, 1061
HindIII AAGCTT 1 cut(s) 602
HpaII CCGG 3 cut(s) 175, 730, 1283
HphI GGTGA 5 cut(s) 715, 745, 1245, 1335, 1508
Hpy166II GTNNAC 2 cut(s) 302, 741
Hpy188I TCNGA 9 cut(s) 128, 274, 619, 751, 1033, 1371, 1491, 1525, 1540
Hpy188III TCNNGA 4 cut(s) 479, 1046, 1560, 1627
Hpy8I GTNNAC 2 cut(s) 302, 741
HpyAV CCTTC 5 cut(s) 364, 892, 949, 1258, 1348
HpyCH4III ACNGT 5 cut(s) 124, 299, 796, 925, 1006
HpyCH4IV ACGT 1 cut(s) 1052
HpyCH4V TGCA 4 cut(s) 908, 971, 1057, 1379
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 752
HpyF3I CTNAG 8 cut(s) 271, 420, 642, 675, 756, 769, 942, 1368
HpySE526I ACGT 1 cut(s) 1052
Hsp92II CATG 4 cut(s) 267, 556, 878, 1061
Ksp22I TGATCA 1 cut(s) 234
Kzo9I GATC 6 cut(s) 234, 288, 532, 1042, 1530, 1629
LguI GCTCTTC 1 cut(s) 441
LmnI GCTCC 3 cut(s) 346, 1453, 1507
Lsp1109I GCAGC 3 cut(s) 174, 325, 1584
LweI GCATC 4 cut(s) 742, 958, 1320, 1489
MaeI CTAG 4 cut(s) 839, 936, 1443, 1509
MaeII ACGT 1 cut(s) 1052
MaeIII GTNAC 3 cut(s) 725, 979, 1060
MalI GATC 6 cut(s) 236, 290, 534, 1044, 1532, 1631
MbiI CCGCTC 1 cut(s) 390
MboI GATC 6 cut(s) 234, 288, 532, 1042, 1530, 1629
MboII GAAGA 5 cut(s) 421, 458, 718, 818, 1624
MflI RGATCY 2 cut(s) 1530, 1629
MhlI GDGCHC 5 cut(s) 386, 1078, 1299, 1450, 1647
MluCI AATT 4 cut(s) 584, 609, 776, 997
MlyI GAGTC 2 cut(s) 1111, 1151
MmeI TCCRAC 2 cut(s) 420, 1591
MseI TTAA 3 cut(s) 587, 606, 612
MspI CCGG 3 cut(s) 175, 730, 1283
MspR9I CCNGG 8 cut(s) 37, 526, 731, 1284, 1360, 1461, 1554, 1584
Mva1269I GAATGC 1 cut(s) 1381
MvaI CCWGG 6 cut(s) 37, 526, 1360, 1461, 1554, 1584
MvnI CGCG 1 cut(s) 397
MwoI GCNNNNNNNGC 2 cut(s) 184, 752
NciI CCSGG 2 cut(s) 731, 1284
NdeII GATC 6 cut(s) 234, 288, 532, 1042, 1530, 1629
NlaIII CATG 4 cut(s) 267, 556, 878, 1061
NlaIV GGNNCC 3 cut(s) 1281, 1324, 1532
NmuCI GTSAC 1 cut(s) 1060
NspI RCATGY 3 cut(s) 267, 878, 1061
PaeI GCATGC 1 cut(s) 267
PciSI GCTCTTC 1 cut(s) 441
PctI GAATGC 1 cut(s) 1381
PfeI GAWTC 8 cut(s) 67, 171, 638, 1103, 1150, 1399, 1541, 1623
PflMI CCANNNNNTGG 1 cut(s) 1466
PfoI TCCNGGA 1 cut(s) 1459
PkrI GCNGC 4 cut(s) 189, 192, 340, 1574
PleI GAGTC 2 cut(s) 1111, 1150
PpsI GAGTC 2 cut(s) 1111, 1150
PpuMI RGGWCCY 1 cut(s) 679
PsiI TTATAA 1 cut(s) 863
Psp124BI GAGCTC 1 cut(s) 1647
Psp5II RGGWCCY 1 cut(s) 679
Psp6I CCWGG 6 cut(s) 35, 524, 1358, 1459, 1552, 1582
PspEI GGTNACC 1 cut(s) 725
PspGI CCWGG 6 cut(s) 35, 524, 1358, 1459, 1552, 1582
PspN4I GGNNCC 3 cut(s) 1281, 1324, 1532
PspPI GGNCC 4 cut(s) 4, 392, 679, 887
PspPPI RGGWCCY 1 cut(s) 679
PsuI RGATCY 2 cut(s) 1530, 1629
RsaI GTAC 4 cut(s) 252, 575, 742, 1456
RsaNI GTAC 4 cut(s) 251, 574, 741, 1455
Rsr2I CGGWCCG 1 cut(s) 392
RsrII CGGWCCG 1 cut(s) 392
SacI GAGCTC 1 cut(s) 1647
SapI GCTCTTC 1 cut(s) 441
SaqAI TTAA 3 cut(s) 587, 606, 612
SatI GCNGC 4 cut(s) 188, 191, 339, 1573
Sau3AI GATC 6 cut(s) 234, 288, 532, 1042, 1530, 1629
Sau96I GGNCC 4 cut(s) 4, 392, 679, 887
SchI GAGTC 2 cut(s) 1111, 1151
ScrFI CCNGG 8 cut(s) 37, 526, 731, 1284, 1360, 1461, 1554, 1584
SduI GDGCHC 5 cut(s) 386, 1078, 1299, 1450, 1647
SfaNI GCATC 4 cut(s) 742, 958, 1320, 1489
SinI GGWCC 2 cut(s) 392, 679
SmlI CTYRAG 3 cut(s) 463, 1435, 1646
SmoI CTYRAG 3 cut(s) 463, 1435, 1646
SphI GCATGC 1 cut(s) 267
Sse9I AATT 4 cut(s) 584, 609, 776, 997
SsiI CCGC 5 cut(s) 190, 390, 395, 903, 1190
SspMI CTAG 4 cut(s) 839, 936, 1443, 1509
SstI GAGCTC 1 cut(s) 1647
StyD4I CCNGG 8 cut(s) 35, 524, 729, 1282, 1358, 1459, 1552, 1582
TaaI ACNGT 5 cut(s) 124, 299, 796, 925, 1006
TaiI ACGT 1 cut(s) 1055
TaqI TCGA 5 cut(s) 182, 498, 822, 1001, 1145
TaqII GACCGA 1 cut(s) 1017
TasI AATT 4 cut(s) 584, 609, 776, 997
TatI WGTACW 3 cut(s) 250, 573, 740
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 8 cut(s) 67, 171, 638, 1103, 1150, 1399, 1541, 1623
Tru1I TTAA 3 cut(s) 587, 606, 612
Tru9I TTAA 3 cut(s) 587, 606, 612
TscAI CASTG 3 cut(s) 799, 1095, 1353
TseFI GTSAC 1 cut(s) 1060
TseI GCWGC 3 cut(s) 187, 338, 1572
Tsp45I GTSAC 1 cut(s) 1060
TspDTI ATGAA 3 cut(s) 459, 704, 1203
TspGWI ACGGA 2 cut(s) 323, 1616
TspRI CASTG 3 cut(s) 799, 1095, 1353
Van91I CCANNNNNTGG 1 cut(s) 1466
VpaK11BI GGWCC 2 cut(s) 392, 679
XceI RCATGY 3 cut(s) 267, 878, 1061
XmiI GTMKAC 1 cut(s) 301
XspI CTAG 4 cut(s) 839, 936, 1443, 1509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.