Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005472

Physical Location & Seq

Genomic Coordinates Reverse (-)

20653672 .. 20657719

Gene Structure 4048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1126600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGATTTTCACAAAGAGAAGTACAAAAAGCAATTAAGGGAGAAAAAGAAGCTTAAAATTAAGAAAGTGAAGTTTTCTCCAAAAACTGAAGCTAAGGACTTTAAGATGAAAACTGATATGGTGAAGAGATTTATGGAGAAAGGTTATCGAGTGAAGTGTACTGCCTTGGATGCTGAGAATAAGGACTTGGGAGAATTGTTTTCTCGTGATAGAAGATGTAGCTCTCATCGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022411 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IF3_C IF3_N

Protein Analysis

79

Amino Acids

9.51

Weight (kDa)

10.05

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF3_C	PF00707	19 - 54	5.4e-08	Translation initiation factor IF-3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34360 AT1G34360 AT1G34360
fragaria_vesca	FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550
malus_domestica	MD05G1123900.v1.1 MD10G1126600.v1.1 MD10G1126800.v1.1
prunus_persica	Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1
pyrus_communis	pycom05g11810
rosa_chinensis	RchiOBHm_Chr6g0278721
rosa_laevigata	RLG00000013198
rosa_multiflora	Rmu_sc0000531.1_g000010
rosa_roxburghii	Rroxscaffold_7G00189680 Rroxscaffold_7G00189940
rosa_rugosa	Rorug06G0118400
rosa_samantha	Rh6AG227300 Rh6BG232800 Rh6CG234900 Rh6DG226500
rosa_wichuraiana	Rw6G019940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	2 cut(s)	23, 160
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	3 cut(s)	52, 92, 222
AluI	AGCT	3 cut(s)	52, 92, 222
AsuHPI	GGTGA	1 cut(s)	133
BauI	CACGAG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	165
BspCNI	CTCAG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	165
BssSI	CACGAG	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	204
Bst6I	CTCTTC	1 cut(s)	119
BstDEI	CTNAG	2 cut(s)	93, 174
BstF5I	GGATG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	22, 159
CviJI	RGCY	3 cut(s)	52, 92, 222
CviKI_1	RGCY	3 cut(s)	52, 92, 222
CviQI	GTAC	2 cut(s)	22, 159
DdeI	CTNAG	2 cut(s)	93, 174
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaiI	YATR	2 cut(s)	119, 134
FokI	GGATG	1 cut(s)	182
HindIII	AAGCTT	1 cut(s)	50
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	2 cut(s)	93, 174
LweI	GCATC	1 cut(s)	160
MboII	GAAGA	2 cut(s)	136, 225
MluCI	AATT	3 cut(s)	32, 57, 194
MseI	TTAA	4 cut(s)	35, 54, 60, 102
MwoI	GCNNNNNNNGC	1 cut(s)	170
RsaI	GTAC	2 cut(s)	23, 160
RsaNI	GTAC	2 cut(s)	22, 159
SaqAI	TTAA	4 cut(s)	35, 54, 60, 102
SetI	ASST	4 cut(s)	54, 94, 145, 224
SfaNI	GCATC	1 cut(s)	160
SgeI	CNNG	5 cut(s)	161, 178, 199, 216, 218
Sse9I	AATT	3 cut(s)	32, 57, 194
StyI	CCWWGG	1 cut(s)	165
TaqI	TCGA	2 cut(s)	148, 229
TasI	AATT	3 cut(s)	32, 57, 194
TatI	WGTACW	2 cut(s)	21, 158
Tru1I	TTAA	4 cut(s)	35, 54, 60, 102
Tru9I	TTAA	4 cut(s)	35, 54, 60, 102
TspDTI	ATGAA	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.