Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005472

Physical Location & Seq

Genomic Coordinates Reverse (-)

20661837 .. 20663292

Gene Structure 1456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1126800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCGTTTTGGAGTAGAATCGGCCAGTCGAAGCTTCGGCAGTTGTCATACCAGTCCAAGACTATCCCTTACGCCGCTTTGATCAACCCCACTGCTTCACACTCGAAAGCTTGCGTGTTAGAAATCCCACGTTTGACGATAGACCTACTGATTTCGGCAGTAAAGTCAGGTTCTTTGCTGCTCCCATCCAGGTGTTTAATGGTTTGGAATTATTTTTACAAAGTTTATGGCGCAAACACTTGTATTAGGAGGAAGCAAATGGTATTCAGGCCAAAACTAACAATTTGCGAAGCAAAACCAGAGAAAATGAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022411 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IF3_C IF3_N

Protein Analysis

106

Amino Acids

12.04

Weight (kDa)

9.98

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34360 AT1G34360 AT1G34360
fragaria_vesca	FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550
malus_domestica	MD05G1123900.v1.1 MD10G1126600.v1.1 MD10G1126800.v1.1
prunus_persica	Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1
pyrus_communis	pycom05g11810
rosa_chinensis	RchiOBHm_Chr6g0278721
rosa_laevigata	RLG00000013198
rosa_multiflora	Rmu_sc0000531.1_g000010
rosa_roxburghii	Rroxscaffold_7G00189680 Rroxscaffold_7G00189940
rosa_rugosa	Rorug06G0118400
rosa_samantha	Rh6AG227300 Rh6BG232800 Rh6CG234900 Rh6DG226500
rosa_wichuraiana	Rw6G019940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	2 cut(s)	34, 110
AluI	AGCT	2 cut(s)	34, 110
AoxI	GGCC	2 cut(s)	22, 269
ApeKI	GCWGC	1 cut(s)	178
AspLEI	GCGC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	190
BclI	TGATCA	1 cut(s)	81
BisI	GCNGC	2 cut(s)	75, 179
BlsI	GCNGC	2 cut(s)	76, 180
Bme1390I	CCNGG	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	190
Bse1I	ACTGG	2 cut(s)	25, 52
BseBI	CCWGG	1 cut(s)	190
BseGI	GGATG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	25, 52
BseXI	GCAGC	1 cut(s)	165
BshFI	GGCC	2 cut(s)	24, 271
BsnI	GGCC	2 cut(s)	24, 271
Bsp143I	GATC	1 cut(s)	81
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	2 cut(s)	24, 271
BsrI	ACTGG	2 cut(s)	25, 52
BssMI	GATC	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	81
BstNI	CCWGG	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	24, 271
BtsCI	GGATG	1 cut(s)	185
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	112
CfoI	GCGC	1 cut(s)	233
CviJI	RGCY	4 cut(s)	24, 34, 110, 271
CviKI_1	RGCY	4 cut(s)	24, 34, 110, 271
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
EaeI	YGGCCR	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	188
FaiI	YATR	2 cut(s)	49, 228
FbaI	TGATCA	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	75, 179
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	2 cut(s)	75, 179
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	2 cut(s)	75, 179
HaeIII	GGCC	2 cut(s)	24, 271
HhaI	GCGC	1 cut(s)	233
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HindIII	AAGCTT	2 cut(s)	32, 108
HinfI	GANTC	1 cut(s)	18
HpyCH4IV	ACGT	1 cut(s)	130
HpySE526I	ACGT	1 cut(s)	130
HspAI	GCGC	1 cut(s)	231
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	186
LpnPI	CCDG	7 cut(s)	38, 65, 153, 175, 202, 253, 312
Lsp1109I	GCAGC	1 cut(s)	165
MaeII	ACGT	1 cut(s)	130
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MluCI	AATT	2 cut(s)	208, 282
MnlI	CCTC	1 cut(s)	243
MseI	TTAA	1 cut(s)	197
MslI	CAYNNNNRTG	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
NdeII	GATC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	2 cut(s)	76, 180
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	2 cut(s)	75, 179
Sau3AI	GATC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	190
SetI	ASST	6 cut(s)	36, 112, 133, 147, 172, 194
SmiMI	CAYNNNNRTG	1 cut(s)	190
Sse9I	AATT	2 cut(s)	208, 282
SsiI	CCGC	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	188
TaiI	ACGT	1 cut(s)	133
TaqI	TCGA	2 cut(s)	29, 104
TasI	AATT	2 cut(s)	208, 282
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	1 cut(s)	178
TspRI	CASTG	1 cut(s)	97
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.