Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005472

Physical Location & Seq

Genomic Coordinates Forward (+)

29789787 .. 29795610

Gene Structure 5824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00189940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGCATTTTGGTGCAGCAGACTCACCCAATCTAGGCTCAGGCAATTAGCCCATCACTCTAAGACCATTCCTTATGCTTCTTCTCTGCTTAACCCCACTACTTCCAAGCCATGCGTTTCAGACAACCCATTGATCTCTCACCCTGAATTTATTTTTGCCAGTAAAGTTAGGTTCTTTGCTGCCCCAGTTCAGGCAAATGCAAATGCAAAGAAGACAGAGCAGGGCACGAGTGGTCCGCGGTTGAATGAGCATATCAGAGCCAATGTTGTTAGGCTTGTTATGGGCGAAGAACATTTTGTCATCTCAAAGAGTGAAGCTCTGGAACGTGCCAGGAATCTTGAACTTGATTTAGTCGAGGTTCAGGGCACAGCTAATCCTCCTGTTTGTAAAATCATGGATTACCATAAGGAGAAGTATAAAAAAGAAACAAGGGAGAAGGAGCAGATTAAAATCAAGTCTAAGGAAGTTAAGACTTTGCGTGCAGATACTAAGGAAGTCAAGTTTTCTCCAAAGACTGAGGCAAAGGATCTCAAGATGAAAGCAGACATGGTGAAGAGATTTATGGACAAGGGTTACCGGGTGAAGTGTACTGCCTCGGATTCTGAGGGTCGGGACTTGGGAGCAGTTTTCTCTCGTCTTATTGCGCTGATAGAAGACACAGCTTATATCGAATGTGAACCTACGGTAGGAAGAGGAAAAGAGTCATTCATAATGGTCAGGCATGTGAAATTTGGCCCACCAAAGAGTGGTGGGAAAAAAACGAAGGCTGAAAACAAAAAAAACCCTGAGAAGGGTAGTGGTGATGGTATTGGGGTTACTACAAGAGCAGACACAGTTCCACTTCCTCCTCAAGAATCTTCTGGTGTGGCTGAAAATAGGTGTAGAAATACTGAGCATATTCCATATCAAAGAAGAGAAGCGCCTACAAACGAGCACTTCTCATCGCCAACAAGAGAAACCAACAGAGCTGCTCCATCGGCATTTAGAAACTCTGCTCAGCTTCCTAACAGTATTCCCAAACAAGAACCATCTAATCCTAATCCTCCCCGTTCTGCAGGACTCAGGCAAGAACCATCTAGTCTTAATCCTCCTCGTTCTCGTCCTCCGGGACTTGGTTATGGGATATTTAGCACCCCAACTGGTAATGGTTCCGTAAAACAAGGTGTGTCGGAAAGGTTTCCGGCAAATCCAAACTCACCAAGTTCAAGACCTTATAGTAGCCAAAGACCAGGAACCGTTGGTAAGGATGGACGGGGGATGGGGAATCTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006996 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022411 GO:0032790 GO:0032984 GO:0032988 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1903008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IF3_C IF3_N

Protein Analysis

424

Amino Acids

46.9

Weight (kDa)

9.84

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF3_N	PF05198	82 - 148	9.7e-23	Translation initiation factor IF-3, N-terminal domain
IF3_C	PF00707	162 - 233	3.7e-08	Translation initiation factor IF-3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34360 AT1G34360 AT1G34360
fragaria_vesca	FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550 FvH4_2g15550
malus_domestica	MD05G1123900.v1.1 MD10G1126600.v1.1 MD10G1126800.v1.1
prunus_persica	Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1 Prupe.8G167900_v2.0.a1
pyrus_communis	pycom05g11810
rosa_chinensis	RchiOBHm_Chr6g0278721
rosa_laevigata	RLG00000013198
rosa_multiflora	Rmu_sc0000531.1_g000010
rosa_roxburghii	Rroxscaffold_7G00189680 Rroxscaffold_7G00189940
rosa_rugosa	Rorug06G0118400
rosa_samantha	Rh6AG227300 Rh6BG232800 Rh6CG234900 Rh6DG226500
rosa_wichuraiana	Rw6G019940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	746
AccII	CGCG	1 cut(s)	238
AciI	CCGC	2 cut(s)	236, 238
AclWI	GGATC	1 cut(s)	534
AcsI	RAATTY	2 cut(s)	146, 728
AfaI	GTAC	1 cut(s)	589
AfiI	CCNNNNNNNGG	7 cut(s)	33, 190, 686, 746, 790, 791, 1112
AgsI	TTSAA	3 cut(s)	244, 341, 1206
AjnI	CCWGG	2 cut(s)	329, 1228
AluBI	AGCT	5 cut(s)	317, 371, 662, 968, 1000
AluI	AGCT	5 cut(s)	317, 371, 662, 968, 1000
Alw21I	GWGCWC	1 cut(s)	936
AlwI	GGATC	1 cut(s)	534
AoxI	GGCC	1 cut(s)	733
ApeKI	GCWGC	3 cut(s)	15, 179, 968
ApoI	RAATTY	2 cut(s)	146, 728
Asp700I	GAANNNNTTC	1 cut(s)	1176
AspLEI	GCGC	2 cut(s)	646, 922
AspS9I	GGNCC	2 cut(s)	233, 734
AsuC2I	CCSGG	2 cut(s)	578, 1107
AsuHPI	GGTGA	6 cut(s)	16, 131, 562, 592, 812, 1188
AvaII	GGWCC	1 cut(s)	233
BaeGI	GKGCMC	2 cut(s)	227, 368
BauI	CACGAG	1 cut(s)	226
BbsI	GAAGAC	2 cut(s)	218, 660
Bbv12I	GWGCWC	1 cut(s)	936
BbvI	GCAGC	3 cut(s)	27, 166, 955
BccI	CCATC	7 cut(s)	60, 797, 982, 1036, 1081, 1241, 1252
BciT130I	CCWGG	2 cut(s)	331, 1230
BcnI	CCSGG	2 cut(s)	578, 1107
BfaI	CTAG	2 cut(s)	33, 1077
BfmI	CTRYAG	1 cut(s)	1053
BfoI	RGCGCY	1 cut(s)	923
BisI	GCNGC	3 cut(s)	16, 180, 969
BlpI	GCTNAGC	1 cut(s)	996
BlsI	GCNGC	3 cut(s)	17, 181, 970
Bme1390I	CCNGG	4 cut(s)	331, 578, 1107, 1230
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	233, 734
BmiI	GGNNCC	2 cut(s)	1150, 1234
BmrFI	CCNGG	4 cut(s)	331, 578, 1107, 1230
BmrI	ACTGGG	1 cut(s)	179
BmuI	ACTGGG	1 cut(s)	179
BpiI	GAAGAC	2 cut(s)	218, 660
BplI	GAGNNNNNCTC	4 cut(s)	301, 333, 923, 955
Bpu10I	CCTNAGC	1 cut(s)	38
Bpu1102I	GCTNAGC	1 cut(s)	996
BpuEI	CTTGAG	2 cut(s)	515, 834
BpuMI	CCSGG	2 cut(s)	578, 1107
BsaBI	GATNNNNATC	1 cut(s)	449
BsaJI	CCNNGG	2 cut(s)	236, 594
Bsc4I	CCNNNNNNNGG	7 cut(s)	33, 190, 686, 746, 790, 791, 1112
Bse1I	ACTGG	3 cut(s)	159, 185, 1144
Bse8I	GATNNNNATC	1 cut(s)	449
BseBI	CCWGG	2 cut(s)	331, 1230
BseDI	CCNNGG	2 cut(s)	236, 594
BseGI	GGATG	2 cut(s)	1252, 1263
BseJI	GATNNNNATC	1 cut(s)	449
BseLI	CCNNNNNNNGG	7 cut(s)	33, 190, 686, 746, 790, 791, 1112
BseMII	CTCAG	7 cut(s)	52, 507, 594, 777, 882, 1010, 1075
BseNI	ACTGG	3 cut(s)	159, 185, 1144
BseRI	GAGGAG	2 cut(s)	837, 1080
BseSI	GKGCMC	2 cut(s)	227, 368
BseXI	GCAGC	3 cut(s)	27, 166, 955
BsgI	GTGCAG	2 cut(s)	34, 501
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	1 cut(s)	735
BsiHKAI	GWGCWC	1 cut(s)	936
BsiSI	CCGG	3 cut(s)	577, 1106, 1181
BslFI	GGGAC	2 cut(s)	626, 1122
BslI	CCNNNNNNNGG	7 cut(s)	33, 190, 686, 746, 790, 791, 1112
BsmFI	GGGAC	2 cut(s)	626, 1122
BsnI	GGCC	1 cut(s)	735
Bsp1286I	GDGCHC	3 cut(s)	227, 368, 936
Bsp143I	GATC	2 cut(s)	132, 526
Bsp1720I	GCTNAGC	1 cut(s)	996
BspACI	CCGC	2 cut(s)	236, 238
BspANI	GGCC	1 cut(s)	735
BspCNI	CTCAG	7 cut(s)	51, 508, 595, 778, 883, 1009, 1074
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	1150, 1234
BspMAI	CTGCAG	1 cut(s)	1057
BspPI	GGATC	1 cut(s)	534
BsrI	ACTGG	3 cut(s)	159, 185, 1144
BssECI	CCNNGG	2 cut(s)	236, 594
BssMI	GATC	2 cut(s)	132, 526
BssSI	CACGAG	1 cut(s)	226
Bst2BI	CACGAG	1 cut(s)	226
Bst2UI	CCWGG	2 cut(s)	331, 1230
Bst4CI	ACNGT	4 cut(s)	685, 835, 1010, 1237
Bst6I	CTCTTC	3 cut(s)	548, 685, 907
BstC8I	GCNNGC	1 cut(s)	480
BstDSI	CCRYGG	1 cut(s)	236
BstEII	GGTNACC	1 cut(s)	572
BstENI	CCTNNNNNAGG	1 cut(s)	684
BstF5I	GGATG	2 cut(s)	1252, 1263
BstFNI	CGCG	1 cut(s)	238
BstH2I	RGCGCY	1 cut(s)	923
BstHHI	GCGC	2 cut(s)	646, 922
BstKTI	GATC	2 cut(s)	135, 529
BstMBI	GATC	2 cut(s)	132, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	977
BstNI	CCWGG	2 cut(s)	331, 1230
BstNSI	RCATGY	1 cut(s)	725
BstPI	GGTNACC	1 cut(s)	572
BstSCI	CCNGG	4 cut(s)	329, 576, 1105, 1228
BstSFI	CTRYAG	1 cut(s)	1053
BstSLI	GKGCMC	2 cut(s)	227, 368
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	3 cut(s)	27, 166, 955
BstV2I	GAAGAC	2 cut(s)	218, 660
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BsuRI	GGCC	1 cut(s)	735
BtgI	CCRYGG	1 cut(s)	236
BtgZI	GCGATG	1 cut(s)	927
BtsCI	GGATG	2 cut(s)	1252, 1263
Cac8I	GCNNGC	1 cut(s)	480
CfoI	GCGC	2 cut(s)	646, 922
Cfr13I	GGNCC	2 cut(s)	233, 734
Cfr42I	CCGCGG	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	588
CviAII	CATG	4 cut(s)	111, 394, 547, 722
CviQI	GTAC	1 cut(s)	588
DpnI	GATC	2 cut(s)	134, 528
DpnII	GATC	2 cut(s)	132, 526
Eam1104I	CTCTTC	3 cut(s)	548, 685, 907
EarI	CTCTTC	3 cut(s)	548, 685, 907
Eco47I	GGWCC	1 cut(s)	233
Eco91I	GGTNACC	1 cut(s)	572
EcoNI	CCTNNNNNAGG	1 cut(s)	684
EcoO65I	GGTNACC	1 cut(s)	572
EcoRII	CCWGG	2 cut(s)	329, 1228
FaeI	CATG	4 cut(s)	114, 397, 550, 725
FaqI	GGGAC	2 cut(s)	626, 1122
FatI	CATG	4 cut(s)	110, 393, 546, 721
Fnu4HI	GCNGC	3 cut(s)	16, 180, 969
FokI	GGATG	2 cut(s)	1259, 1270
Fsp4HI	GCNGC	3 cut(s)	16, 180, 969
FspBI	CTAG	2 cut(s)	33, 1077
GlaI	GCGC	2 cut(s)	645, 921
GluI	GCNGC	3 cut(s)	16, 180, 969
HaeII	RGCGCY	1 cut(s)	923
HaeIII	GGCC	1 cut(s)	735
HapII	CCGG	3 cut(s)	577, 1106, 1181
HhaI	GCGC	2 cut(s)	646, 922
Hin1II	CATG	4 cut(s)	114, 397, 550, 725
Hin6I	GCGC	2 cut(s)	644, 920
HinP1I	GCGC	2 cut(s)	644, 920
HinfI	GANTC	7 cut(s)	21, 334, 599, 701, 854, 1059, 1264
HpaII	CCGG	3 cut(s)	577, 1106, 1181
HphI	GGTGA	6 cut(s)	16, 131, 562, 592, 812, 1188
Hpy166II	GTNNAC	2 cut(s)	588, 677
Hpy188I	TCNGA	5 cut(s)	121, 257, 598, 604, 1171
Hpy188III	TCNNGA	6 cut(s)	320, 338, 532, 611, 851, 1206
Hpy8I	GTNNAC	2 cut(s)	588, 677
HpyAV	CCTTC	3 cut(s)	430, 757, 784
HpyCH4III	ACNGT	4 cut(s)	685, 835, 1010, 1237
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	5 cut(s)	15, 200, 206, 482, 1055
HpyF10VI	GCNNNNNNNGC	1 cut(s)	977
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	4 cut(s)	114, 397, 550, 725
HspAI	GCGC	2 cut(s)	644, 920
KspI	CCGCGG	1 cut(s)	239
Kzo9I	GATC	2 cut(s)	132, 526
LmnI	GCTCC	3 cut(s)	439, 620, 976
Lsp1109I	GCAGC	3 cut(s)	27, 166, 955
MaeI	CTAG	2 cut(s)	33, 1077
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	2 cut(s)	572, 814
MalI	GATC	2 cut(s)	134, 528
MboI	GATC	2 cut(s)	132, 526
MboII	GAAGA	8 cut(s)	72, 223, 299, 565, 665, 702, 849, 924
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	3 cut(s)	227, 368, 936
MluCI	AATT	3 cut(s)	44, 146, 728
MlyI	GAGTC	3 cut(s)	15, 710, 1053
MmeI	TCCRAC	1 cut(s)	1149
MroXI	GAANNNNTTC	1 cut(s)	1176
MseI	TTAA	4 cut(s)	90, 447, 468, 1083
MslI	CAYNNNNRTG	1 cut(s)	10
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	3 cut(s)	577, 1106, 1181
MspR9I	CCNGG	4 cut(s)	331, 578, 1107, 1230
MvaI	CCWGG	2 cut(s)	331, 1230
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	1 cut(s)	977
NciI	CCSGG	2 cut(s)	578, 1107
NdeII	GATC	2 cut(s)	132, 526
NlaIII	CATG	4 cut(s)	114, 397, 550, 725
NlaIV	GGNNCC	2 cut(s)	1150, 1234
NspI	RCATGY	1 cut(s)	725
PdmI	GAANNNNTTC	1 cut(s)	1176
PfeI	GAWTC	4 cut(s)	334, 599, 854, 1264
PflMI	CCANNNNNTGG	1 cut(s)	746
PfoI	TCCNGGA	1 cut(s)	1105
PkrI	GCNGC	3 cut(s)	17, 181, 970
PleI	GAGTC	3 cut(s)	15, 709, 1053
PpsI	GAGTC	3 cut(s)	15, 709, 1053
Psp6I	CCWGG	2 cut(s)	329, 1228
PspEI	GGTNACC	1 cut(s)	572
PspGI	CCWGG	2 cut(s)	329, 1228
PspN4I	GGNNCC	2 cut(s)	1150, 1234
PspPI	GGNCC	2 cut(s)	233, 734
PstI	CTGCAG	1 cut(s)	1057
PsuI	RGATCY	1 cut(s)	526
RsaI	GTAC	1 cut(s)	589
RsaNI	GTAC	1 cut(s)	588
RseI	CAYNNNNRTG	1 cut(s)	10
SacII	CCGCGG	1 cut(s)	239
SaqAI	TTAA	4 cut(s)	90, 447, 468, 1083
SatI	GCNGC	3 cut(s)	16, 180, 969
Sau3AI	GATC	2 cut(s)	132, 526
Sau96I	GGNCC	2 cut(s)	233, 734
SchI	GAGTC	3 cut(s)	15, 710, 1053
ScrFI	CCNGG	4 cut(s)	331, 578, 1107, 1230
SduI	GDGCHC	3 cut(s)	227, 368, 936
SfcI	CTRYAG	1 cut(s)	1053
Sfr303I	CCGCGG	1 cut(s)	239
SgrBI	CCGCGG	1 cut(s)	239
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	10
SmlI	CTYRAG	2 cut(s)	530, 849
SmoI	CTYRAG	2 cut(s)	530, 849
Sse9I	AATT	3 cut(s)	44, 146, 728
SsiI	CCGC	2 cut(s)	236, 238
SspMI	CTAG	2 cut(s)	33, 1077
StyD4I	CCNGG	4 cut(s)	329, 576, 1105, 1228
TaaI	ACNGT	4 cut(s)	685, 835, 1010, 1237
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	2 cut(s)	354, 669
TasI	AATT	3 cut(s)	44, 146, 728
TatI	WGTACW	1 cut(s)	587
TfiI	GAWTC	4 cut(s)	334, 599, 854, 1264
Tru1I	TTAA	4 cut(s)	90, 447, 468, 1083
Tru9I	TTAA	4 cut(s)	90, 447, 468, 1083
TseI	GCWGC	3 cut(s)	15, 179, 968
TspDTI	ATGAA	2 cut(s)	551, 697
TspGWI	ACGGA	1 cut(s)	1141
Van91I	CCANNNNNTGG	1 cut(s)	746
VpaK11BI	GGWCC	1 cut(s)	233
XagI	CCTNNNNNAGG	1 cut(s)	684
XapI	RAATTY	2 cut(s)	146, 728
XceI	RCATGY	1 cut(s)	725
XmnI	GAANNNNTTC	1 cut(s)	1176
XspI	CTAG	2 cut(s)	33, 1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.