Rroxscaffold_7G00190180

Zeaxanthin epoxidase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018908
Physical Location & Seq
Forward (+)
30222984 .. 30224518
1535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00190180.1

Sequence Viewer

Length: 573 bp
ATGTCACTTATGTTCTTTTCATTTCTTGTAGAGAAAGAGCTAGAGAAGAACCCAGCTGAGATGAAGCAATTTATGTTGAGCAAGCTGGGAAATATACCTGATGAAATAAAAGCTGTAATTAAAAACACTGAATTGGATGCTTTTGTTTCCTCTCCTTTGAGATTTAGGCATCCATGGGAGCTTCTTTGGGGAAATATTAGCAAAGGCAATGTTTGTGTAGCTGGAGATGCGCTCCATCCTATGACCCCGGACCTTGGCCGAGGAGGCTGCTCTGCAATAGAAGACGGTGTTGTGTTGGCAAGATGTCTTGGTGAGGCGTTGCTGAAAAACTCAAGGCAAGAAATGAAAGGAAAAAGTGAACAAGGAAAGGAGGAATATAAGAAAATTGAGATGGGGTTGAATAAGTTTGCCAATGAGAGGAGATGGAGAGGCATTGACCTGATTAGTACAGGTTATATGATTGCTTTAATGCAAGGGAGTGAAGCAAGCAATGAAGCATATCCGAAATTACTCTACACTAATTCAAAGTGCACATATACCGATGGTATTTCTGGCAACATATCTCAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAD_binding_3

Protein Analysis

190

Amino Acids

21.21

Weight (kDa)

6.75

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 65 - 108 3.5e-06 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018908)

Species Orthologous Gene IDs
prunus_persica Prupe.8G167400_v2.0.a1 Prupe.8G167400_v2.0.a1 Prupe.I003800_v2.0.a1 Prupe.I004000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0278571
rosa_multiflora Rmu_sc0000258.1_g000078
rosa_roxburghii Rroxscaffold_7G00190180
rosa_rugosa Rorug06G0118400
rosa_samantha Rh6DG225700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 256
AfaI GTAC 1 cut(s) 448
AfiI CCNNNNNNNGG 2 cut(s) 254, 417
AgsI TTSAA 2 cut(s) 400, 525
AluBI AGCT 6 cut(s) 40, 56, 85, 113, 181, 221
AluI AGCT 6 cut(s) 40, 56, 85, 113, 181, 221
Alw21I GWGCWC 1 cut(s) 533
Alw44I GTGCAC 1 cut(s) 529
AoxI GGCC 1 cut(s) 256
ApaLI GTGCAC 1 cut(s) 529
ApeKI GCWGC 1 cut(s) 267
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 323
AvaII GGWCC 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 533
BbsI GAAGAC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 533
BbvI GCAGC 1 cut(s) 254
BccI CCATC 4 cut(s) 243, 385, 417, 536
BcgI CGANNNNNNTGC 2 cut(s) 249, 283
BcnI CCSGG 1 cut(s) 248
BfaI CTAG 1 cut(s) 41
BglI GCCNNNNNGGC 1 cut(s) 264
BisI GCNGC 1 cut(s) 268
BlsI GCNGC 1 cut(s) 269
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 3 cut(s) 127, 178, 217
BpiI GAAGAC 1 cut(s) 288
BplI GAGNNNNNCTC 2 cut(s) 216, 248
BpmI CTGGAG 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 316
BpuMI CCSGG 1 cut(s) 248
BsaJI CCNNGG 4 cut(s) 173, 246, 253, 259
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 417
Bse3DI GCAATG 2 cut(s) 214, 496
BseDI CCNNGG 4 cut(s) 173, 246, 253, 259
BseGI GGATG 3 cut(s) 142, 169, 235
BseLI CCNNNNNNNGG 2 cut(s) 254, 417
BseMI GCAATG 2 cut(s) 214, 496
BseMII CTCAG 1 cut(s) 48
BseRI GAGGAG 2 cut(s) 276, 433
BseSI GKGCMC 1 cut(s) 533
BseXI GCAGC 1 cut(s) 254
BseYI CCCAGC 2 cut(s) 52, 85
BshFI GGCC 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 533
BsiSI CCGG 1 cut(s) 248
BslI CCNNNNNNNGG 2 cut(s) 254, 417
BsnI GGCC 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 533
Bsp19I CCATGG 1 cut(s) 173
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 49
BsrDI GCAATG 2 cut(s) 214, 496
BssECI CCNNGG 4 cut(s) 173, 246, 253, 259
BssT1I CCWWGG 2 cut(s) 173, 253
Bst4CI ACNGT 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 83, 487
BstDEI CTNAG 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 173
BstF5I GGATG 3 cut(s) 142, 169, 235
BstHHI GCGC 1 cut(s) 232
BstMWI GCNNNNNNNGC 2 cut(s) 227, 264
BstSCI CCNGG 1 cut(s) 246
BstSLI GKGCMC 1 cut(s) 533
BstV1I GCAGC 1 cut(s) 254
BstV2I GAAGAC 1 cut(s) 288
BsuRI GGCC 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 173
BtsCI GGATG 3 cut(s) 142, 169, 235
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 2 cut(s) 83, 487
CfoI GCGC 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 250
Csp6I GTAC 1 cut(s) 447
CviAII CATG 1 cut(s) 174
CviJI RGCY 8 cut(s) 40, 56, 85, 113, 181, 221, 258, 267
CviKI_1 RGCY 8 cut(s) 40, 56, 85, 113, 181, 221, 258, 267
CviQI GTAC 1 cut(s) 447
DdeI CTNAG 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 256
Eco130I CCWWGG 2 cut(s) 173, 253
Eco47I GGWCC 1 cut(s) 250
EcoT14I CCWWGG 2 cut(s) 173, 253
ErhI CCWWGG 2 cut(s) 173, 253
FaeI CATG 1 cut(s) 177
FatI CATG 1 cut(s) 173
Fnu4HI GCNGC 1 cut(s) 268
FokI GGATG 3 cut(s) 149, 156, 222
Fsp4HI GCNGC 1 cut(s) 268
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 231
GluI GCNGC 1 cut(s) 268
GsaI CCCAGC 2 cut(s) 56, 89
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 1 cut(s) 258
HapII CCGG 1 cut(s) 248
HhaI GCGC 1 cut(s) 232
Hin1II CATG 1 cut(s) 177
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HpaII CCGG 1 cut(s) 248
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 2 cut(s) 359, 531
Hpy188I TCNGA 1 cut(s) 504
Hpy8I GTNNAC 2 cut(s) 359, 531
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4V TGCA 3 cut(s) 275, 472, 531
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 264
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 1 cut(s) 177
HspAI GCGC 1 cut(s) 230
LmnI GCTCC 2 cut(s) 178, 237
LpnPI CCDG 8 cut(s) 66, 71, 111, 207, 261, 435, 452, 537
Lsp1109I GCAGC 1 cut(s) 254
LweI GCATC 3 cut(s) 127, 178, 217
MaeI CTAG 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 3
MboII GAAGA 2 cut(s) 58, 293
MhlI GDGCHC 1 cut(s) 533
MluCI AATT 6 cut(s) 68, 117, 131, 384, 506, 520
MnlI CCTC 7 cut(s) 160, 254, 257, 307, 364, 411, 422
MseI TTAA 2 cut(s) 120, 467
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 248
MwoI GCNNNNNNNGC 2 cut(s) 227, 264
NciI CCSGG 1 cut(s) 248
NcoI CCATGG 1 cut(s) 173
NlaIII CATG 1 cut(s) 177
NmeAIII GCCGAG 1 cut(s) 284
NmuCI GTSAC 1 cut(s) 3
PkrI GCNGC 1 cut(s) 269
PspFI CCCAGC 2 cut(s) 52, 85
PspPI GGNCC 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
SaqAI TTAA 2 cut(s) 120, 467
SatI GCNGC 1 cut(s) 268
Sau96I GGNCC 1 cut(s) 250
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 533
SfaNI GCATC 3 cut(s) 127, 178, 217
SinI GGWCC 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 6 cut(s) 68, 117, 131, 384, 506, 520
SspI AATATT 1 cut(s) 196
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 2 cut(s) 173, 253
TaaI ACNGT 1 cut(s) 287
TasI AATT 6 cut(s) 68, 117, 131, 384, 506, 520
TatI WGTACW 1 cut(s) 446
Tru1I TTAA 2 cut(s) 120, 467
Tru9I TTAA 2 cut(s) 120, 467
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 267
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 5 cut(s) 9, 77, 117, 359, 507
TspRI CASTG 1 cut(s) 133
VneI GTGCAC 1 cut(s) 529
VpaK11BI GGWCC 1 cut(s) 250
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.