pycom01g02140

Photosystem I reaction center subunit N

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0014548
Physical Location & Seq
Forward (+)
1794853 .. 1795694
842 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 453 bp
ATGTCTGAACTTGTCAATGCAAAGACGACTTGCATGCCTTCAGTTGTATCAGCTGCTCAGACCAAAGTTGTAGCACTCAGGGCCCAACAGCCTAGCACACAAAATAATCAAGGAGCTGATGGAAGAAGGGCTGTGCTGCTTTCCCTGGCGGCCATTGCTTTCACCGCTGTTTCTTCCAACTCCGCTGCCAATGCCGGTGTCATTGATGATTACCTCGAAAAAAGCAAAGCCAACAAGGAACTGAATGACAAGAAGAGGCTGGCAACGAGCGGTGCAAACTTTGCAAGAGCATTCACTGTTCAATTTGGAACATGTAAGTTCCCGGAGAACTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGAAAGTACCATTTCTCTCTGACGATCTTAGTTTGGAGTGCGAAGGCAAGGACAAGTACAAGTGTGGTTCCAACGTTTTCTGGAAATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
PsaN

Protein Analysis

151

Amino Acids

16.22

Weight (kDa)

9.15

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsaN PF05479 23 - 150 1.3e-64 Photosystem I reaction centre subunit N (PSAN or PSI-N)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014548)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64040 AT5G64040
fragaria_vesca FvH4_1g24360
malus_domestica MD01G1004300.v1.1 MD15G1441800.v1.1
prunus_persica Prupe.4G271200_v2.0.a1
pyrus_communis pycom01g02140
rosa_chinensis RchiOBHm_Chr2g0120891
rosa_laevigata RLG00000018599
rosa_multiflora Rmu_ssc0000077.1_g000001
rosa_roxburghii Rroxscaffold_2G00122760
rosa_rugosa Rorug02G0232500
rosa_samantha Rh2AG288900 Rh2BG299900 Rh2CG277900 Rh2DG314100
rosa_wichuraiana Rw2G023140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 270
AciI CCGC 4 cut(s) 149, 165, 183, 270
AclI AACGTT 1 cut(s) 435
AcoI YGGCCR 1 cut(s) 150
AcuI CTGAAG 1 cut(s) 24
AfaI GTAC 2 cut(s) 369, 419
AflIII ACRYGT 1 cut(s) 311
AgsI TTSAA 1 cut(s) 302
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 2 cut(s) 53, 116
AluI AGCT 2 cut(s) 53, 116
AoxI GGCC 2 cut(s) 81, 150
ApaI GGGCCC 1 cut(s) 85
ApeKI GCWGC 4 cut(s) 53, 136, 185, 339
AspS9I GGNCC 2 cut(s) 81, 82
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 85
BbvI GCAGC 4 cut(s) 40, 123, 172, 326
BccI CCATC 1 cut(s) 113
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BciT130I CCWGG 1 cut(s) 146
BcnI CCSGG 1 cut(s) 323
BfaI CTAG 1 cut(s) 93
BglII AGATCT 1 cut(s) 346
BisI GCNGC 5 cut(s) 54, 137, 150, 186, 340
BlsI GCNGC 5 cut(s) 55, 138, 151, 187, 341
Bme1390I CCNGG 2 cut(s) 146, 323
BmgT120I GGNCC 2 cut(s) 81, 82
BmiI GGNNCC 2 cut(s) 83, 430
BmrFI CCNGG 2 cut(s) 146, 323
BpuMI CCSGG 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 144
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 340
Bse3DI GCAATG 1 cut(s) 153
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 2 cut(s) 71, 91
BseNI ACTGG 1 cut(s) 340
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 4 cut(s) 40, 123, 172, 326
BshFI GGCC 2 cut(s) 83, 152
BsiSI CCGG 2 cut(s) 195, 323
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 2 cut(s) 83, 152
Bsp120I GGGCCC 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 2 cut(s) 346, 385
BspACI CCGC 4 cut(s) 149, 165, 183, 270
BspANI GGCC 2 cut(s) 83, 152
BspCNI CTCAG 2 cut(s) 70, 90
BspLI GGNNCC 2 cut(s) 83, 430
BsrBI CCGCTC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 153
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 1 cut(s) 340
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 2 cut(s) 346, 385
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 1 cut(s) 248
BstAPI GCANNNNNTGC 1 cut(s) 281
BstC8I GCNNGC 2 cut(s) 35, 261
BstDEI CTNAG 3 cut(s) 57, 77, 389
BstKTI GATC 2 cut(s) 349, 388
BstMBI GATC 2 cut(s) 346, 385
BstMWI GCNNNNNNNGC 5 cut(s) 80, 155, 164, 191, 281
BstNI CCWGG 1 cut(s) 146
BstNSI RCATGY 2 cut(s) 37, 315
BstSCI CCNGG 2 cut(s) 144, 321
BstSLI GKGCMC 1 cut(s) 85
BstV1I GCAGC 4 cut(s) 40, 123, 172, 326
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BsuRI GGCC 2 cut(s) 83, 152
BtsIMutI CAGTG 2 cut(s) 294, 333
Cac8I GCNNGC 2 cut(s) 35, 261
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 2 cut(s) 81, 82
Csp6I GTAC 2 cut(s) 368, 418
CviAII CATG 2 cut(s) 34, 312
CviJI RGCY 9 cut(s) 53, 83, 91, 116, 131, 152, 230, 259, 339
CviKI_1 RGCY 9 cut(s) 53, 83, 91, 116, 131, 152, 230, 259, 339
CviQI GTAC 2 cut(s) 368, 418
DdeI CTNAG 3 cut(s) 57, 77, 389
DpnI GATC 2 cut(s) 348, 387
DpnII GATC 2 cut(s) 346, 385
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Eco24I GRGCYC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 24
EcoO109I RGGNCCY 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 85
FaeI CATG 2 cut(s) 37, 315
FaiI YATR 2 cut(s) 35, 313
FatI CATG 2 cut(s) 33, 311
Fnu4HI GCNGC 5 cut(s) 54, 137, 150, 186, 340
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 5 cut(s) 54, 137, 150, 186, 340
FspBI CTAG 1 cut(s) 93
GluI GCNGC 5 cut(s) 54, 137, 150, 186, 340
HaeIII GGCC 2 cut(s) 83, 152
HapII CCGG 2 cut(s) 195, 323
Hin1II CATG 2 cut(s) 37, 315
HpaII CCGG 2 cut(s) 195, 323
HphI GGTGA 1 cut(s) 154
Hpy188I TCNGA 3 cut(s) 7, 60, 382
Hpy188III TCNNGA 1 cut(s) 442
HpyAV CCTTC 3 cut(s) 48, 120, 398
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 4 cut(s) 20, 33, 275, 284
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 155, 164, 191, 281
HpyF3I CTNAG 3 cut(s) 57, 77, 389
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 2 cut(s) 37, 315
Kzo9I GATC 2 cut(s) 346, 385
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 8 cut(s) 64, 131, 158, 208, 245, 321, 336, 427
Lsp1109I GCAGC 4 cut(s) 40, 123, 172, 326
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 435
MalI GATC 2 cut(s) 348, 387
MbiI CCGCTC 1 cut(s) 270
MboI GATC 2 cut(s) 346, 385
MboII GAAGA 3 cut(s) 135, 165, 265
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 2 cut(s) 224, 249
MspA1I CMGCKG 3 cut(s) 53, 167, 185
MspI CCGG 2 cut(s) 195, 323
MspR9I CCNGG 2 cut(s) 146, 323
Mva1269I GAATGC 1 cut(s) 290
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 5 cut(s) 80, 155, 164, 191, 281
NciI CCSGG 1 cut(s) 323
NdeII GATC 2 cut(s) 346, 385
NlaIII CATG 2 cut(s) 37, 315
NlaIV GGNNCC 2 cut(s) 83, 430
NspI RCATGY 2 cut(s) 37, 315
PaeI GCATGC 1 cut(s) 37
PciI ACATGT 1 cut(s) 311
PctI GAATGC 1 cut(s) 290
PfoI TCCNGGA 1 cut(s) 321
PkrI GCNGC 5 cut(s) 55, 138, 151, 187, 341
PscI ACATGT 1 cut(s) 311
Psp1406I AACGTT 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 83, 430
PspOMI GGGCCC 1 cut(s) 81
PspPI GGNCC 2 cut(s) 81, 82
PsuI RGATCY 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 2 cut(s) 369, 419
RsaNI GTAC 2 cut(s) 368, 418
SatI GCNGC 5 cut(s) 54, 137, 150, 186, 340
Sau3AI GATC 2 cut(s) 346, 385
Sau96I GGNCC 2 cut(s) 81, 82
ScrFI CCNGG 2 cut(s) 146, 323
SduI GDGCHC 1 cut(s) 85
SetI ASST 4 cut(s) 55, 118, 216, 438
SphI GCATGC 1 cut(s) 37
Sse9I AATT 1 cut(s) 302
SsiI CCGC 4 cut(s) 149, 165, 183, 270
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 144, 321
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 1 cut(s) 438
TaqI TCGA 1 cut(s) 216
TasI AATT 1 cut(s) 302
TatI WGTACW 1 cut(s) 417
TauI GCSGC 1 cut(s) 152
TscAI CASTG 2 cut(s) 301, 340
TseI GCWGC 4 cut(s) 53, 136, 185, 339
TspRI CASTG 2 cut(s) 301, 340
XceI RCATGY 2 cut(s) 37, 315
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.