Belongs to the disease resistance NB-LRR family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD07G1185500.v1.1 |
| pyrus_communis | pycom01g04080 pycom05g08400 pycom07g12130 pycom11g13980 pycom17g16240 pycom17g17130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1199, 1224, 3018 |
| AarI | CACCTGC | 1 cut(s) | 1360 |
| AatII | GACGTC | 1 cut(s) | 500 |
| Acc36I | ACCTGC | 1 cut(s) | 1360 |
| AccB1I | GGYRCC | 1 cut(s) | 1647 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1552 |
| AccI | GTMKAC | 1 cut(s) | 1486 |
| AccII | CGCG | 2 cut(s) | 843, 1768 |
| AccIII | TCCGGA | 1 cut(s) | 2244 |
| AciI | CCGC | 6 cut(s) | 843, 1364, 1367, 1376, 1768, 2938 |
| AclWI | GGATC | 6 cut(s) | 37, 1175, 1267, 1633, 2683, 3013 |
| AcoI | YGGCCR | 2 cut(s) | 921, 1631 |
| AcsI | RAATTY | 8 cut(s) | 66, 1041, 1193, 1235, 1322, 2104, 2631, 2846 |
| AcuI | CTGAAG | 1 cut(s) | 995 |
| AcvI | CACGTG | 2 cut(s) | 821, 1957 |
| AcyI | GRCGYC | 3 cut(s) | 497, 1537, 2737 |
| AfaI | GTAC | 7 cut(s) | 751, 775, 800, 882, 2059, 2154, 2560 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 930, 1174, 1256, 1499, 1552, 2345, 2831 |
| AflIII | ACRYGT | 4 cut(s) | 1078, 1227, 1607, 1954 |
| AgeI | ACCGGT | 1 cut(s) | 926 |
| AjnI | CCWGG | 5 cut(s) | 572, 918, 983, 1110, 2680 |
| AleI | CACNNNNGTG | 2 cut(s) | 947, 1955 |
| AluBI | AGCT | 6 cut(s) | 242, 566, 979, 1531, 1991, 2919 |
| AluI | AGCT | 6 cut(s) | 242, 566, 979, 1531, 1991, 2919 |
| Alw21I | GWGCWC | 2 cut(s) | 938, 2027 |
| Alw26I | GTCTC | 4 cut(s) | 1387, 1645, 2089, 2407 |
| AlwI | GGATC | 6 cut(s) | 37, 1175, 1267, 1633, 2683, 3013 |
| Ama87I | CYCGRG | 1 cut(s) | 671 |
| Aor13HI | TCCGGA | 1 cut(s) | 2244 |
| AoxI | GGCC | 6 cut(s) | 921, 1165, 1353, 1443, 1631, 1947 |
| ApeKI | GCWGC | 1 cut(s) | 563 |
| ApoI | RAATTY | 8 cut(s) | 66, 1041, 1193, 1235, 1322, 2104, 2631, 2846 |
| AseI | ATTAAT | 3 cut(s) | 116, 2007, 2900 |
| AsiGI | ACCGGT | 1 cut(s) | 926 |
| AspA2I | CCTAGG | 2 cut(s) | 1330, 2158 |
| AspLEI | GCGC | 3 cut(s) | 464, 584, 2338 |
| AspS9I | GGNCC | 3 cut(s) | 1166, 1354, 1947 |
| AsuC2I | CCSGG | 3 cut(s) | 946, 1761, 2718 |
| AsuHPI | GGTGA | 8 cut(s) | 607, 726, 840, 962, 1100, 1253, 1291, 2165 |
| AsuII | TTCGAA | 1 cut(s) | 438 |
| AvaI | CYCGRG | 1 cut(s) | 671 |
| AvrII | CCTAGG | 2 cut(s) | 1330, 2158 |
| AxyI | CCTNAGG | 1 cut(s) | 1571 |
| BaeGI | GKGCMC | 1 cut(s) | 919 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 443, 476 |
| BalI | TGGCCA | 1 cut(s) | 923 |
| BanI | GGYRCC | 1 cut(s) | 1647 |
| BanII | GRGCYC | 2 cut(s) | 1559, 2688 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2551, 2583 |
| BbrPI | CACGTG | 2 cut(s) | 821, 1957 |
| BbsI | GAAGAC | 1 cut(s) | 2728 |
| Bbv12I | GWGCWC | 2 cut(s) | 938, 2027 |
| BbvI | GCAGC | 1 cut(s) | 575 |
| BccI | CCATC | 3 cut(s) | 1721, 1919, 2249 |
| BceAI | ACGGC | 3 cut(s) | 768, 1661, 3042 |
| BciT130I | CCWGG | 5 cut(s) | 574, 920, 985, 1112, 2682 |
| BciVI | GTATCC | 2 cut(s) | 158, 2061 |
| BclI | TGATCA | 1 cut(s) | 309 |
| BcnI | CCSGG | 3 cut(s) | 946, 1761, 2718 |
| BcoDI | GTCTC | 4 cut(s) | 1387, 1645, 2089, 2407 |
| BfaI | CTAG | 8 cut(s) | 330, 1134, 1331, 1494, 2159, 2541, 2874, 2970 |
| BfmI | CTRYAG | 1 cut(s) | 762 |
| BfoI | RGCGCY | 1 cut(s) | 2339 |
| BfuAI | ACCTGC | 1 cut(s) | 1360 |
| BfuI | GTATCC | 2 cut(s) | 158, 2061 |
| BglII | AGATCT | 1 cut(s) | 1404 |
| BisI | GCNGC | 3 cut(s) | 564, 1367, 2938 |
| BlnI | CCTAGG | 2 cut(s) | 1330, 2158 |
| BlsI | GCNGC | 3 cut(s) | 565, 1368, 2939 |
| BmcAI | AGTACT | 1 cut(s) | 2059 |
| Bme1390I | CCNGG | 8 cut(s) | 574, 920, 946, 985, 1112, 1761, 2682, 2718 |
| BmeT110I | CYCGRG | 1 cut(s) | 671 |
| BmgT120I | GGNCC | 3 cut(s) | 1166, 1354, 1947 |
| BmiI | GGNNCC | 4 cut(s) | 1649, 1793, 2206, 2687 |
| BmrFI | CCNGG | 8 cut(s) | 574, 920, 946, 985, 1112, 1761, 2682, 2718 |
| BmsI | GCATC | 6 cut(s) | 212, 288, 998, 1160, 1716, 2378 |
| BpiI | GAAGAC | 1 cut(s) | 2728 |
| BpmI | CTGGAG | 4 cut(s) | 595, 1133, 2007, 2664 |
| Bpu14I | TTCGAA | 1 cut(s) | 438 |
| BpuEI | CTTGAG | 2 cut(s) | 789, 2456 |
| BpuMI | CCSGG | 3 cut(s) | 946, 1761, 2718 |
| BsaAI | YACGTR | 3 cut(s) | 16, 821, 1957 |
| BsaHI | GRCGYC | 3 cut(s) | 497, 1537, 2737 |
| BsaI | GGTCTC | 1 cut(s) | 1645 |
| BsaJI | CCNNGG | 8 cut(s) | 918, 945, 984, 1330, 1634, 1652, 2158, 2681 |
| BsaWI | WCCGGW | 2 cut(s) | 926, 2244 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 930, 1174, 1256, 1499, 1552, 2345, 2831 |
| Bse118I | RCCGGY | 1 cut(s) | 926 |
| Bse21I | CCTNAGG | 1 cut(s) | 1571 |
| Bse3DI | GCAATG | 1 cut(s) | 2769 |
| BseAI | TCCGGA | 1 cut(s) | 2244 |
| BseBI | CCWGG | 5 cut(s) | 574, 920, 985, 1112, 2682 |
| BseDI | CCNNGG | 8 cut(s) | 918, 945, 984, 1330, 1634, 1652, 2158, 2681 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 930, 1174, 1256, 1499, 1552, 2345, 2831 |
| BseMI | GCAATG | 1 cut(s) | 2769 |
| BseMII | CTCAG | 3 cut(s) | 515, 1585, 2402 |
| BseRI | GAGGAG | 4 cut(s) | 1792, 1795, 2565, 2936 |
| BseSI | GKGCMC | 1 cut(s) | 919 |
| BseXI | GCAGC | 1 cut(s) | 575 |
| BseYI | CCCAGC | 1 cut(s) | 784 |
| BsgI | GTGCAG | 2 cut(s) | 1900, 2631 |
| Bsh1236I | CGCG | 2 cut(s) | 843, 1768 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1257, 1380 |
| BshFI | GGCC | 6 cut(s) | 923, 1167, 1355, 1445, 1633, 1949 |
| BshNI | GGYRCC | 1 cut(s) | 1647 |
| BshTI | ACCGGT | 1 cut(s) | 926 |
| BsiEI | CGRYCG | 2 cut(s) | 1257, 1380 |
| BsiHKAI | GWGCWC | 2 cut(s) | 938, 2027 |
| BsiHKCI | CYCGRG | 1 cut(s) | 671 |
| BsiSI | CCGG | 6 cut(s) | 728, 927, 945, 1760, 2245, 2718 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 930, 1174, 1256, 1499, 1552, 2345, 2831 |
| BsmAI | GTCTC | 4 cut(s) | 1387, 1645, 2089, 2407 |
| BsmBI | CGTCTC | 1 cut(s) | 1387 |
| BsmI | GAATGC | 1 cut(s) | 968 |
| BsnI | GGCC | 6 cut(s) | 923, 1167, 1355, 1445, 1633, 1949 |
| Bso31I | GGTCTC | 1 cut(s) | 1645 |
| BsoBI | CYCGRG | 1 cut(s) | 671 |
| Bsp119I | TTCGAA | 1 cut(s) | 438 |
| Bsp1286I | GDGCHC | 5 cut(s) | 919, 938, 1559, 2027, 2688 |
| Bsp13I | TCCGGA | 1 cut(s) | 2244 |
| Bsp1407I | TGTACA | 1 cut(s) | 2558 |
| Bsp143I | GATC | 9 cut(s) | 42, 309, 1180, 1259, 1404, 1625, 2255, 2675, 3005 |
| BspACI | CCGC | 6 cut(s) | 843, 1364, 1367, 1376, 1768, 2938 |
| BspANI | GGCC | 6 cut(s) | 923, 1167, 1355, 1445, 1633, 1949 |
| BspCNI | CTCAG | 3 cut(s) | 516, 1584, 2403 |
| BspEI | TCCGGA | 1 cut(s) | 2244 |
| BspFNI | CGCG | 2 cut(s) | 843, 1768 |
| BspHI | TCATGA | 1 cut(s) | 1473 |
| BspLI | GGNNCC | 4 cut(s) | 1649, 1793, 2206, 2687 |
| BspMI | ACCTGC | 1 cut(s) | 1360 |
| BspPI | GGATC | 6 cut(s) | 37, 1175, 1267, 1633, 2683, 3013 |
| BspQI | GCTCTTC | 1 cut(s) | 2926 |
| BspT104I | TTCGAA | 1 cut(s) | 438 |
| BspT107I | GGYRCC | 1 cut(s) | 1647 |
| BspTNI | GGTCTC | 1 cut(s) | 1645 |
| BsrDI | GCAATG | 1 cut(s) | 2769 |
| BsrFI | RCCGGY | 1 cut(s) | 926 |
| BsrGI | TGTACA | 1 cut(s) | 2558 |
| BssAI | RCCGGY | 1 cut(s) | 926 |
| BssECI | CCNNGG | 8 cut(s) | 918, 945, 984, 1330, 1634, 1652, 2158, 2681 |
| BssMI | GATC | 9 cut(s) | 42, 309, 1180, 1259, 1404, 1625, 2255, 2675, 3005 |
| BssNI | GRCGYC | 3 cut(s) | 497, 1537, 2737 |
| BssT1I | CCWWGG | 2 cut(s) | 1330, 2158 |
| Bst2UI | CCWGG | 5 cut(s) | 574, 920, 985, 1112, 2682 |
| Bst4CI | ACNGT | 3 cut(s) | 914, 1255, 1435 |
| Bst6I | CTCTTC | 4 cut(s) | 1838, 2572, 2583, 2926 |
| BstACI | GRCGYC | 3 cut(s) | 497, 1537, 2737 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 511 |
| BstAUI | TGTACA | 1 cut(s) | 2558 |
| BstBAI | YACGTR | 3 cut(s) | 16, 821, 1957 |
| BstBI | TTCGAA | 1 cut(s) | 438 |
| BstC8I | GCNNGC | 2 cut(s) | 725, 2334 |
| BstDEI | CTNAG | 8 cut(s) | 524, 1440, 1571, 2300, 2411, 2419, 2465, 2906 |
| BstDSI | CCRYGG | 2 cut(s) | 1634, 1652 |
| BstEII | GGTNACC | 1 cut(s) | 846 |
| BstFNI | CGCG | 2 cut(s) | 843, 1768 |
| BstH2I | RGCGCY | 1 cut(s) | 2339 |
| BstHHI | GCGC | 3 cut(s) | 464, 584, 2338 |
| BstKTI | GATC | 9 cut(s) | 45, 312, 1183, 1262, 1407, 1628, 2258, 2678, 3008 |
| BstMAI | GTCTC | 4 cut(s) | 1387, 1645, 2089, 2407 |
| BstMBI | GATC | 9 cut(s) | 42, 309, 1180, 1259, 1404, 1625, 2255, 2675, 3005 |
| BstMCI | CGRYCG | 2 cut(s) | 1257, 1380 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 468, 511, 995, 2031, 2745 |
| BstNI | CCWGG | 5 cut(s) | 574, 920, 985, 1112, 2682 |
| BstNSI | RCATGY | 5 cut(s) | 132, 494, 1082, 1611, 2236 |
| BstPI | GGTNACC | 1 cut(s) | 846 |
| BstSCI | CCNGG | 8 cut(s) | 572, 918, 944, 983, 1110, 1759, 2680, 2716 |
| BstSFI | CTRYAG | 1 cut(s) | 762 |
| BstSLI | GKGCMC | 1 cut(s) | 919 |
| BstUI | CGCG | 2 cut(s) | 843, 1768 |
| BstV1I | GCAGC | 1 cut(s) | 575 |
| BstV2I | GAAGAC | 1 cut(s) | 2728 |
| BstX2I | RGATCY | 5 cut(s) | 1180, 1404, 1625, 2675, 3005 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 1111, 1957, 1985, 2672 |
| BstYI | RGATCY | 5 cut(s) | 1180, 1404, 1625, 2675, 3005 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1571 |
| BsuI | GTATCC | 2 cut(s) | 158, 2061 |
| BsuRI | GGCC | 6 cut(s) | 923, 1167, 1355, 1445, 1633, 1949 |
| BtgI | CCRYGG | 2 cut(s) | 1634, 1652 |
| BtsIMutI | CAGTG | 1 cut(s) | 2408 |
| BveI | ACCTGC | 1 cut(s) | 1360 |
| Cac8I | GCNNGC | 2 cut(s) | 725, 2334 |
| CciI | TCATGA | 1 cut(s) | 1473 |
| CfoI | GCGC | 3 cut(s) | 464, 584, 2338 |
| Cfr10I | RCCGGY | 1 cut(s) | 926 |
| Cfr13I | GGNCC | 3 cut(s) | 1166, 1354, 1947 |
| CseI | GACGC | 3 cut(s) | 987, 1545, 2745 |
| Csp6I | GTAC | 7 cut(s) | 750, 774, 799, 881, 2058, 2153, 2559 |
| CspAI | ACCGGT | 1 cut(s) | 926 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 16, 51 |
| CviQI | GTAC | 7 cut(s) | 750, 774, 799, 881, 2058, 2153, 2559 |
| DdeI | CTNAG | 8 cut(s) | 524, 1440, 1571, 2300, 2411, 2419, 2465, 2906 |
| DpnI | GATC | 9 cut(s) | 44, 311, 1182, 1261, 1406, 1627, 2257, 2677, 3007 |
| DpnII | GATC | 9 cut(s) | 42, 309, 1180, 1259, 1404, 1625, 2255, 2675, 3005 |
| DraI | TTTAAA | 3 cut(s) | 616, 2116, 2430 |
| EaeI | YGGCCR | 2 cut(s) | 921, 1631 |
| Eam1104I | CTCTTC | 4 cut(s) | 1838, 2572, 2583, 2926 |
| EarI | CTCTTC | 4 cut(s) | 1838, 2572, 2583, 2926 |
| Eco130I | CCWWGG | 2 cut(s) | 1330, 2158 |
| Eco24I | GRGCYC | 2 cut(s) | 1559, 2688 |
| Eco31I | GGTCTC | 1 cut(s) | 1645 |
| Eco57I | CTGAAG | 1 cut(s) | 995 |
| Eco72I | CACGTG | 2 cut(s) | 821, 1957 |
| Eco81I | CCTNAGG | 1 cut(s) | 1571 |
| Eco88I | CYCGRG | 1 cut(s) | 671 |
| Eco91I | GGTNACC | 1 cut(s) | 846 |
| EcoO65I | GGTNACC | 1 cut(s) | 846 |
| EcoRI | GAATTC | 1 cut(s) | 66 |
| EcoRII | CCWGG | 5 cut(s) | 572, 918, 983, 1110, 2680 |
| EcoT14I | CCWWGG | 2 cut(s) | 1330, 2158 |
| EcoT22I | ATGCAT | 4 cut(s) | 1017, 1033, 1553, 1731 |
| EcoT38I | GRGCYC | 2 cut(s) | 1559, 2688 |
| ErhI | CCWWGG | 2 cut(s) | 1330, 2158 |
| Esp3I | CGTCTC | 1 cut(s) | 1387 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 247, 279 |
| FauI | CCCGC | 2 cut(s) | 836, 1761 |
| FauNDI | CATATG | 1 cut(s) | 651 |
| FbaI | TGATCA | 1 cut(s) | 309 |
| FblI | GTMKAC | 1 cut(s) | 1486 |
| Fnu4HI | GCNGC | 3 cut(s) | 564, 1367, 2938 |
| FriOI | GRGCYC | 2 cut(s) | 1559, 2688 |
| Fsp4HI | GCNGC | 3 cut(s) | 564, 1367, 2938 |
| FspBI | CTAG | 8 cut(s) | 330, 1134, 1331, 1494, 2159, 2541, 2874, 2970 |
| GlaI | GCGC | 3 cut(s) | 463, 583, 2337 |
| GluI | GCNGC | 3 cut(s) | 564, 1367, 2938 |
| GsaI | CCCAGC | 1 cut(s) | 788 |
| GsuI | CTGGAG | 4 cut(s) | 595, 1133, 2007, 2664 |
| HaeII | RGCGCY | 1 cut(s) | 2339 |
| HaeIII | GGCC | 6 cut(s) | 923, 1167, 1355, 1445, 1633, 1949 |
| HapII | CCGG | 6 cut(s) | 728, 927, 945, 1760, 2245, 2718 |
| HgaI | GACGC | 3 cut(s) | 987, 1545, 2745 |
| HhaI | GCGC | 3 cut(s) | 464, 584, 2338 |
| Hin1I | GRCGYC | 3 cut(s) | 497, 1537, 2737 |
| Hin6I | GCGC | 3 cut(s) | 462, 582, 2336 |
| HinP1I | GCGC | 3 cut(s) | 462, 582, 2336 |
| HincII | GTYRAC | 2 cut(s) | 1487, 2807 |
| HindII | GTYRAC | 2 cut(s) | 1487, 2807 |
| HindIII | AAGCTT | 1 cut(s) | 977 |
| HpaII | CCGG | 6 cut(s) | 728, 927, 945, 1760, 2245, 2718 |
| HphI | GGTGA | 8 cut(s) | 607, 726, 840, 962, 1100, 1253, 1291, 2165 |
| Hpy166II | GTNNAC | 5 cut(s) | 896, 1487, 2155, 2559, 2807 |
| Hpy8I | GTNNAC | 5 cut(s) | 896, 1487, 2155, 2559, 2807 |
| Hpy99I | CGWCG | 6 cut(s) | 499, 549, 1267, 1488, 1539, 2056 |
| HpyAV | CCTTC | 9 cut(s) | 901, 1329, 1662, 1666, 1807, 1831, 2083, 2363, 2996 |
| HpyCH4III | ACNGT | 3 cut(s) | 914, 1255, 1435 |
| HpyCH4IV | ACGT | 8 cut(s) | 15, 497, 820, 1227, 1956, 2221, 2667, 2755 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 468, 511, 995, 2031, 2745 |
| HpyF3I | CTNAG | 8 cut(s) | 524, 1440, 1571, 2300, 2411, 2419, 2465, 2906 |
| HpySE526I | ACGT | 8 cut(s) | 15, 497, 820, 1227, 1956, 2221, 2667, 2755 |
| Hsp92I | GRCGYC | 3 cut(s) | 497, 1537, 2737 |
| HspAI | GCGC | 3 cut(s) | 462, 582, 2336 |
| Kpn2I | TCCGGA | 1 cut(s) | 2244 |
| Ksp22I | TGATCA | 1 cut(s) | 309 |
| Kzo9I | GATC | 9 cut(s) | 42, 309, 1180, 1259, 1404, 1625, 2255, 2675, 3005 |
| LguI | GCTCTTC | 1 cut(s) | 2926 |
| LmnI | GCTCC | 5 cut(s) | 933, 1536, 1980, 1988, 2691 |
| Lsp1109I | GCAGC | 1 cut(s) | 575 |
| LweI | GCATC | 6 cut(s) | 212, 288, 998, 1160, 1716, 2378 |
| MaeI | CTAG | 8 cut(s) | 330, 1134, 1331, 1494, 2159, 2541, 2874, 2970 |
| MaeII | ACGT | 8 cut(s) | 15, 497, 820, 1227, 1956, 2221, 2667, 2755 |
| MaeIII | GTNAC | 7 cut(s) | 732, 742, 846, 1435, 1845, 2047, 2171 |
| MalI | GATC | 9 cut(s) | 44, 311, 1182, 1261, 1406, 1627, 2257, 2677, 3007 |
| MboI | GATC | 9 cut(s) | 42, 309, 1180, 1259, 1404, 1625, 2255, 2675, 3005 |
| MfeI | CAATTG | 3 cut(s) | 230, 1161, 2829 |
| MflI | RGATCY | 5 cut(s) | 1180, 1404, 1625, 2675, 3005 |
| MhlI | GDGCHC | 5 cut(s) | 919, 938, 1559, 2027, 2688 |
| MlsI | TGGCCA | 1 cut(s) | 923 |
| MluNI | TGGCCA | 1 cut(s) | 923 |
| MlyI | GAGTC | 8 cut(s) | 607, 740, 865, 1124, 1588, 2463, 2617, 2978 |
| MmeI | TCCRAC | 6 cut(s) | 153, 1237, 1274, 1558, 2235, 2381 |
| Mox20I | TGGCCA | 1 cut(s) | 923 |
| Mph1103I | ATGCAT | 4 cut(s) | 1017, 1033, 1553, 1731 |
| MroI | TCCGGA | 1 cut(s) | 2244 |
| MscI | TGGCCA | 1 cut(s) | 923 |
| MslI | CAYNNNNRTG | 6 cut(s) | 823, 947, 957, 1397, 1433, 1955 |
| Msp20I | TGGCCA | 1 cut(s) | 923 |
| MspI | CCGG | 6 cut(s) | 728, 927, 945, 1760, 2245, 2718 |
| MspR9I | CCNGG | 8 cut(s) | 574, 920, 946, 985, 1112, 1761, 2682, 2718 |
| MunI | CAATTG | 3 cut(s) | 230, 1161, 2829 |
| Mva1269I | GAATGC | 1 cut(s) | 968 |
| MvaI | CCWGG | 5 cut(s) | 574, 920, 985, 1112, 2682 |
| MvnI | CGCG | 2 cut(s) | 843, 1768 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 468, 511, 995, 2031, 2745 |
| NciI | CCSGG | 3 cut(s) | 946, 1761, 2718 |
| NdeI | CATATG | 1 cut(s) | 651 |
| NdeII | GATC | 9 cut(s) | 42, 309, 1180, 1259, 1404, 1625, 2255, 2675, 3005 |
| NlaIV | GGNNCC | 4 cut(s) | 1649, 1793, 2206, 2687 |
| NmeAIII | GCCGAG | 1 cut(s) | 1609 |
| NmuCI | GTSAC | 5 cut(s) | 732, 742, 846, 1435, 2171 |
| NsiI | ATGCAT | 4 cut(s) | 1017, 1033, 1553, 1731 |
| NspI | RCATGY | 5 cut(s) | 132, 494, 1082, 1611, 2236 |
| NspV | TTCGAA | 1 cut(s) | 438 |
| OliI | CACNNNNGTG | 2 cut(s) | 947, 1955 |
| PaeR7I | CTCGAG | 1 cut(s) | 671 |
| PagI | TCATGA | 1 cut(s) | 1473 |
| PaqCI | CACCTGC | 1 cut(s) | 1360 |
| PciI | ACATGT | 2 cut(s) | 1078, 1607 |
| PciSI | GCTCTTC | 1 cut(s) | 2926 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1259, 2060 |
| PctI | GAATGC | 1 cut(s) | 968 |
| PfeI | GAWTC | 9 cut(s) | 440, 538, 1186, 1246, 1308, 1780, 2405, 2528, 2835 |
| PflFI | GACNNNGTC | 1 cut(s) | 2880 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1552 |
| PinAI | ACCGGT | 1 cut(s) | 926 |
| PkrI | GCNGC | 3 cut(s) | 565, 1368, 2939 |
| PleI | GAGTC | 8 cut(s) | 606, 739, 864, 1123, 1587, 2463, 2617, 2978 |
| PmaCI | CACGTG | 2 cut(s) | 821, 1957 |
| PmlI | CACGTG | 2 cut(s) | 821, 1957 |
| PpsI | GAGTC | 8 cut(s) | 606, 739, 864, 1123, 1587, 2463, 2617, 2978 |
| Ppu21I | YACGTR | 3 cut(s) | 16, 821, 1957 |
| PscI | ACATGT | 2 cut(s) | 1078, 1607 |
| PshBI | ATTAAT | 3 cut(s) | 116, 2007, 2900 |
| PsiI | TTATAA | 3 cut(s) | 1199, 1224, 3018 |
| Psp6I | CCWGG | 5 cut(s) | 572, 918, 983, 1110, 2680 |
| PspCI | CACGTG | 2 cut(s) | 821, 1957 |
| PspEI | GGTNACC | 1 cut(s) | 846 |
| PspFI | CCCAGC | 1 cut(s) | 784 |
| PspGI | CCWGG | 5 cut(s) | 572, 918, 983, 1110, 2680 |
| PspN4I | GGNNCC | 4 cut(s) | 1649, 1793, 2206, 2687 |
| PspPI | GGNCC | 3 cut(s) | 1166, 1354, 1947 |
| PsuI | RGATCY | 5 cut(s) | 1180, 1404, 1625, 2675, 3005 |
| PsyI | GACNNNGTC | 1 cut(s) | 2880 |
| RsaI | GTAC | 7 cut(s) | 751, 775, 800, 882, 2059, 2154, 2560 |
| RsaNI | GTAC | 7 cut(s) | 750, 774, 799, 881, 2058, 2153, 2559 |
| RseI | CAYNNNNRTG | 6 cut(s) | 823, 947, 957, 1397, 1433, 1955 |
| SalI | GTCGAC | 1 cut(s) | 1485 |
| SapI | GCTCTTC | 1 cut(s) | 2926 |
| SatI | GCNGC | 3 cut(s) | 564, 1367, 2938 |
| Sau3AI | GATC | 9 cut(s) | 42, 309, 1180, 1259, 1404, 1625, 2255, 2675, 3005 |
| Sau96I | GGNCC | 3 cut(s) | 1166, 1354, 1947 |
| ScaI | AGTACT | 1 cut(s) | 2059 |
| SchI | GAGTC | 8 cut(s) | 607, 740, 865, 1124, 1588, 2463, 2617, 2978 |
| ScrFI | CCNGG | 8 cut(s) | 574, 920, 946, 985, 1112, 1761, 2682, 2718 |
| SduI | GDGCHC | 5 cut(s) | 919, 938, 1559, 2027, 2688 |
| SfaNI | GCATC | 6 cut(s) | 212, 288, 998, 1160, 1716, 2378 |
| SfcI | CTRYAG | 1 cut(s) | 762 |
| Sfr274I | CTCGAG | 1 cut(s) | 671 |
| SfuI | TTCGAA | 1 cut(s) | 438 |
| SgrAI | CRCCGGYG | 1 cut(s) | 926 |
| SlaI | CTCGAG | 1 cut(s) | 671 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 823, 947, 957, 1397, 1433, 1955 |
| SmlI | CTYRAG | 3 cut(s) | 671, 804, 2471 |
| SmoI | CTYRAG | 3 cut(s) | 671, 804, 2471 |
| SsiI | CCGC | 6 cut(s) | 843, 1364, 1367, 1376, 1768, 2938 |
| SspI | AATATT | 2 cut(s) | 303, 1213 |
| SspMI | CTAG | 8 cut(s) | 330, 1134, 1331, 1494, 2159, 2541, 2874, 2970 |
| StyD4I | CCNGG | 8 cut(s) | 572, 918, 944, 983, 1110, 1759, 2680, 2716 |
| StyI | CCWWGG | 2 cut(s) | 1330, 2158 |
| TaaI | ACNGT | 3 cut(s) | 914, 1255, 1435 |
| TaiI | ACGT | 8 cut(s) | 18, 500, 823, 1230, 1959, 2224, 2670, 2758 |
| TatI | WGTACW | 2 cut(s) | 2057, 2558 |
| TauI | GCSGC | 2 cut(s) | 1369, 2940 |
| TfiI | GAWTC | 9 cut(s) | 440, 538, 1186, 1246, 1308, 1780, 2405, 2528, 2835 |
| TscAI | CASTG | 1 cut(s) | 2415 |
| TseFI | GTSAC | 5 cut(s) | 732, 742, 846, 1435, 2171 |
| TseI | GCWGC | 1 cut(s) | 563 |
| Tsp45I | GTSAC | 5 cut(s) | 732, 742, 846, 1435, 2171 |
| TspGWI | ACGGA | 5 cut(s) | 1669, 2035, 2159, 2843, 2917 |
| TspRI | CASTG | 1 cut(s) | 2415 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2880 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1552 |
| VspI | ATTAAT | 3 cut(s) | 116, 2007, 2900 |
| XapI | RAATTY | 8 cut(s) | 66, 1041, 1193, 1235, 1322, 2104, 2631, 2846 |
| XbaI | TCTAGA | 1 cut(s) | 2873 |
| XceI | RCATGY | 5 cut(s) | 132, 494, 1082, 1611, 2236 |
| XhoI | CTCGAG | 1 cut(s) | 671 |
| XmaJI | CCTAGG | 2 cut(s) | 1330, 2158 |
| XmiI | GTMKAC | 1 cut(s) | 1486 |
| XspI | CTAG | 8 cut(s) | 330, 1134, 1331, 1494, 2159, 2541, 2874, 2970 |
| ZraI | GACGTC | 1 cut(s) | 498 |
| ZrmI | AGTACT | 1 cut(s) | 2059 |
| Zsp2I | ATGCAT | 4 cut(s) | 1017, 1033, 1553, 1731 |