pycom11g13980

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0019785
Physical Location & Seq
Forward (+)
13755616 .. 13757797
2182 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g13980.8

Sequence Viewer

Length: 1608 bp
ATGCATGAAGTAGGCTTGACAATTTCTGACACGACCCCACCTGTTAAGATAACGGGTTGGTCCGGGTATACACTTTATACCCCTAAAAATAATATAATAATATTATATATATATATATGTATTACTATTGTTTTATTTATTTTCATATTGGTTTTTCTATACTTAGTTTATGCAGAAGAGAGTTTTCATATGGAAAACCTTACTGAAAACATCATCAACATAACTCTTAAAGCAATGAAAATTGAAGGATTTTGTAAAAGGAATGATGTGCAACCTTTGAGTTTCATTGACAAAGTTTTAACTTCTGATAAAGGCTTCACAACTTTGAAAAGAAAAACTCCTTCATTTTTGCATTGTTGCTTTTTTATTACGCTCTTATTTTGGAGTGTAGATGTAATACTTAACGACAAATTAAGTGCAAATTTAAGGAAAAAAATATTTTTCTTAACGGGTCATAACGGAACGGGGTCATTTTATCTGTTAAGTGACCCACTTATTAAGGACCCGTATTACACGAAAACGACACGAAACACGACAAACACGACCTGTTTGCCAAGCCTACATGAAAGAAAAAAGTTGTGCAGAAATTATTTTTTTATCATTATATTCTTCTTAGTTTTTAAACAGTTGTTTCCCTTTGGGTATAAAATGCTTAATTTAGAATTTTTGTTCTTTAAAAAAATTAACTTGATCGGGTTTAGTTGTCAAATTCGAGCATACGCTAGGAATTTAATATTTATTGGCGACGAAATGAGCAAAATCTGTAATGTTTTAAGAACTTCAATTACAAGAAGAAACATTGTAACCTTCATCTCCAATTTTGACATCAGAAAGGCCTGCAGCAACAATACAAACCCTAATCACCTCGTTTTCTTTAGGGTTCTTTCAACCCTAAAACTTATAAATGTTGCCCTTGTGGCCAACCATCTCATCCCACAACCAAACATTAATAGCACAATATTGAATAATTCTACAATTAAATCATTCAACTATGGCAGCTCTCAAATTCTTTTCACTACTAATTGCTTCAATCGCCTTTGTTCAAATGGCAATGGCTGGAGACCCGGACATTCTTACCGACTTTATTGCTCCTCCAAACGTAACAATAGATGGCAACTTCTTCACAAACACCGCATTTCGCTAAAGGCAACCATGGCTGAGTTCCCCGCTCTTAATGGCCAGAGTGTTTCATACGCCATCCTCGAATTCCCATCTAAAAGTACCAACCCACCACACACTCATCCTCGCGCTGCTGAACTCCTTTTCCTTATTGAAGGTGCCCTCGAAGTTGGTTTCGTGGACACCAAAAACACACTCTTTACACAGACCCTTCAAGTAGGTGATCTGTTTGTATTTCCCAAGGGGCTAGCACACTTCCAGTACAATGCTGATCCACAAGTCCCAGCTCTGGCAGTTTCTGCCTTTGGAAGTGCAAATGCCGGAACTGTATCAATACCCAGCACCTTGTTTGCCACCGGTCGCCACCATTCAAAAGCTCAAGGCTGGACTTGCACCCTAGCCATGAGGACAGAATTGTTAACCAGAAGTTCAATGTTCTGCTCAAGCAATTTTCTATCCTTTTGTTTTCTTCTAATTTTGTTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

536

Amino Acids

61.0

Weight (kDa)

9.54

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019785)

Species Orthologous Gene IDs
malus_domestica MD07G1185500.v1.1
pyrus_communis pycom01g04080 pycom05g08400 pycom07g12130 pycom11g13980 pycom17g16240 pycom17g17130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 902
AccB1I GGYRCC 1 cut(s) 1277
AccBSI CCGCTC 1 cut(s) 1169
AccI GTMKAC 1 cut(s) 68
AccII CGCG 1 cut(s) 1248
AciI CCGC 2 cut(s) 1132, 1167
AclWI GGATC 1 cut(s) 1385
AcoI YGGCCR 2 cut(s) 918, 1177
AcsI RAATTY 6 cut(s) 421, 662, 708, 727, 1005, 1205
AfaI GTAC 2 cut(s) 1222, 1382
AfiI CCNNNNNNNGG 1 cut(s) 1408
AgeI ACCGGT 1 cut(s) 1475
AloI GAACNNNNNNTCC 2 cut(s) 1248, 1280
AluBI AGCT 3 cut(s) 999, 1406, 1496
AluI AGCT 3 cut(s) 999, 1406, 1496
Alw26I GTCTC 1 cut(s) 1054
AlwI GGATC 1 cut(s) 1385
AlwNI CAGNNNCTG 1 cut(s) 1418
AoxI GGCC 3 cut(s) 834, 918, 1177
ApeKI GCWGC 3 cut(s) 840, 996, 1250
ApoI RAATTY 6 cut(s) 421, 662, 708, 727, 1005, 1205
AseI ATTAAT 1 cut(s) 948
AsiGI ACCGGT 1 cut(s) 1475
AspLEI GCGC 1 cut(s) 1250
AspS9I GGNCC 2 cut(s) 60, 502
AsuC2I CCSGG 2 cut(s) 64, 1065
AsuHPI GGTGA 2 cut(s) 854, 1352
AsuNHI GCTAGC 1 cut(s) 1366
AvaII GGWCC 2 cut(s) 60, 502
BaeGI GKGCMC 1 cut(s) 1282
BalI TGGCCA 2 cut(s) 920, 1179
BanI GGYRCC 1 cut(s) 1277
BbvI GCAGC 3 cut(s) 852, 1008, 1237
BccI CCATC 4 cut(s) 933, 1104, 1205, 1219
BcgI CGANNNNNNTGC 4 cut(s) 532, 566, 1068, 1102
BcnI CCSGG 2 cut(s) 64, 1065
BcoDI GTCTC 1 cut(s) 1054
BfaI CTAG 3 cut(s) 723, 1367, 1517
BfmI CTRYAG 1 cut(s) 838
BglI GCCNNNNNGGC 1 cut(s) 917
BisI GCNGC 3 cut(s) 841, 997, 1251
BlsI GCNGC 3 cut(s) 842, 998, 1252
Bme1390I CCNGG 2 cut(s) 64, 1065
Bme18I GGWCC 2 cut(s) 60, 502
BmgT120I GGNCC 2 cut(s) 60, 502
BmiI GGNNCC 2 cut(s) 504, 1279
BmrFI CCNGG 2 cut(s) 64, 1065
BmtI GCTAGC 1 cut(s) 1370
BpmI CTGGAG 1 cut(s) 1078
BpuEI CTTGAG 2 cut(s) 1482, 1546
BpuMI CCSGG 2 cut(s) 64, 1065
BsaI GGTCTC 1 cut(s) 1054
BsaJI CCNNGG 2 cut(s) 1152, 1359
BsaWI WCCGGW 1 cut(s) 1475
Bsc4I CCNNNNNNNGG 1 cut(s) 1408
Bse118I RCCGGY 1 cut(s) 1475
Bse1I ACTGG 1 cut(s) 1378
Bse3DI GCAATG 2 cut(s) 240, 1057
BseDI CCNNGG 2 cut(s) 1152, 1359
BseGI GGATG 3 cut(s) 930, 1197, 1240
BseLI CCNNNNNNNGG 1 cut(s) 1408
BseMI GCAATG 2 cut(s) 240, 1057
BseMII CTCAG 1 cut(s) 1149
BseNI ACTGG 1 cut(s) 1378
BseRI GAGGAG 1 cut(s) 1081
BseSI GKGCMC 1 cut(s) 1282
BseXI GCAGC 3 cut(s) 852, 1008, 1237
BseYI CCCAGC 2 cut(s) 1402, 1457
BsgI GTGCAG 1 cut(s) 601
Bsh1236I CGCG 1 cut(s) 1248
Bsh1285I CGRYCG 1 cut(s) 1480
BshFI GGCC 3 cut(s) 836, 920, 1179
BshNI GGYRCC 1 cut(s) 1277
BshTI ACCGGT 1 cut(s) 1475
BsiEI CGRYCG 1 cut(s) 1480
BsiSI CCGG 4 cut(s) 63, 1065, 1440, 1476
BslFI GGGAC 1 cut(s) 1385
BslI CCNNNNNNNGG 1 cut(s) 1408
BsmAI GTCTC 1 cut(s) 1054
BsmFI GGGAC 1 cut(s) 1385
BsnI GGCC 3 cut(s) 836, 920, 1179
Bso31I GGTCTC 1 cut(s) 1054
Bsp1286I GDGCHC 1 cut(s) 1282
Bsp143I GATC 3 cut(s) 690, 1342, 1390
Bsp19I CCATGG 1 cut(s) 1152
BspACI CCGC 2 cut(s) 1132, 1167
BspANI GGCC 3 cut(s) 836, 920, 1179
BspCNI CTCAG 1 cut(s) 1150
BspFNI CGCG 1 cut(s) 1248
BspLI GGNNCC 2 cut(s) 504, 1279
BspMAI CTGCAG 1 cut(s) 842
BspOI GCTAGC 1 cut(s) 1370
BspPI GGATC 1 cut(s) 1385
BspT107I GGYRCC 1 cut(s) 1277
BspTNI GGTCTC 1 cut(s) 1054
BsrBI CCGCTC 1 cut(s) 1169
BsrDI GCAATG 2 cut(s) 240, 1057
BsrFI RCCGGY 1 cut(s) 1475
BsrI ACTGG 1 cut(s) 1378
BssAI RCCGGY 1 cut(s) 1475
BssECI CCNNGG 2 cut(s) 1152, 1359
BssMI GATC 3 cut(s) 690, 1342, 1390
BssNAI GTATAC 1 cut(s) 69
BssT1I CCWWGG 2 cut(s) 1152, 1359
Bst1107I GTATAC 1 cut(s) 69
Bst4CI ACNGT 2 cut(s) 627, 1447
Bst6I CTCTTC 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 1418
BstC8I GCNNGC 2 cut(s) 838, 1368
BstDEI CTNAG 3 cut(s) 163, 613, 1158
BstDSI CCRYGG 1 cut(s) 1152
BstF5I GGATG 3 cut(s) 930, 1197, 1240
BstFNI CGCG 1 cut(s) 1248
BstHHI GCGC 1 cut(s) 1250
BstKTI GATC 3 cut(s) 693, 1345, 1393
BstMAI GTCTC 1 cut(s) 1054
BstMBI GATC 3 cut(s) 690, 1342, 1390
BstMCI CGRYCG 1 cut(s) 1480
BstMWI GCNNNNNNNGC 5 cut(s) 917, 1032, 1154, 1418, 1509
BstSCI CCNGG 2 cut(s) 62, 1063
BstSFI CTRYAG 1 cut(s) 838
BstSLI GKGCMC 1 cut(s) 1282
BstUI CGCG 1 cut(s) 1248
BstV1I GCAGC 3 cut(s) 852, 1008, 1237
BstZ17I GTATAC 1 cut(s) 69
BsuRI GGCC 3 cut(s) 836, 920, 1179
BtgI CCRYGG 1 cut(s) 1152
BtsCI GGATG 3 cut(s) 930, 1197, 1240
Cac8I GCNNGC 2 cut(s) 838, 1368
CaiI CAGNNNCTG 1 cut(s) 1418
CfoI GCGC 1 cut(s) 1250
Cfr10I RCCGGY 1 cut(s) 1475
Cfr13I GGNCC 2 cut(s) 60, 502
Csp6I GTAC 2 cut(s) 1221, 1381
CspAI ACCGGT 1 cut(s) 1475
CviAII CATG 4 cut(s) 5, 563, 1153, 1522
CviQI GTAC 2 cut(s) 1221, 1381
DdeI CTNAG 3 cut(s) 163, 613, 1158
DpnI GATC 3 cut(s) 692, 1344, 1392
DpnII GATC 3 cut(s) 690, 1342, 1390
DraI TTTAAA 2 cut(s) 622, 676
EaeI YGGCCR 2 cut(s) 918, 1177
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco130I CCWWGG 2 cut(s) 1152, 1359
Eco147I AGGCCT 1 cut(s) 836
Eco31I GGTCTC 1 cut(s) 1054
Eco47I GGWCC 2 cut(s) 60, 502
EcoO109I RGGNCCY 1 cut(s) 502
EcoRI GAATTC 1 cut(s) 1205
EcoT14I CCWWGG 2 cut(s) 1152, 1359
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 1152, 1359
FaeI CATG 4 cut(s) 8, 566, 1156, 1525
FaqI GGGAC 1 cut(s) 1385
FatI CATG 4 cut(s) 4, 562, 1152, 1521
FauI CCCGC 1 cut(s) 1174
FauNDI CATATG 1 cut(s) 189
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 3 cut(s) 841, 997, 1251
FokI GGATG 3 cut(s) 917, 1184, 1227
Fsp4HI GCNGC 3 cut(s) 841, 997, 1251
FspBI CTAG 3 cut(s) 723, 1367, 1517
GlaI GCGC 1 cut(s) 1249
GluI GCNGC 3 cut(s) 841, 997, 1251
GsaI CCCAGC 2 cut(s) 1406, 1461
GsuI CTGGAG 1 cut(s) 1078
HaeIII GGCC 3 cut(s) 836, 920, 1179
HapII CCGG 4 cut(s) 63, 1065, 1440, 1476
HhaI GCGC 1 cut(s) 1250
Hin1II CATG 4 cut(s) 8, 566, 1156, 1525
Hin6I GCGC 1 cut(s) 1248
HinP1I GCGC 1 cut(s) 1248
HincII GTYRAC 1 cut(s) 1539
HindII GTYRAC 1 cut(s) 1539
HpaI GTTAAC 1 cut(s) 1539
HpaII CCGG 4 cut(s) 63, 1065, 1440, 1476
HphI GGTGA 2 cut(s) 854, 1352
Hpy166II GTNNAC 3 cut(s) 69, 1300, 1539
Hpy188I TCNGA 3 cut(s) 28, 307, 830
Hpy8I GTNNAC 3 cut(s) 69, 1300, 1539
Hpy99I CGWCG 1 cut(s) 749
HpyAV CCTTC 5 cut(s) 239, 351, 817, 1268, 1340
HpyCH4III ACNGT 2 cut(s) 627, 1447
HpyCH4IV ACGT 1 cut(s) 1099
HpyCH4V TGCA 9 cut(s) 4, 173, 271, 352, 419, 582, 840, 1433, 1512
HpyF10VI GCNNNNNNNGC 5 cut(s) 917, 1032, 1154, 1418, 1509
HpyF3I CTNAG 3 cut(s) 163, 613, 1158
HpySE526I ACGT 1 cut(s) 1099
Hsp92II CATG 4 cut(s) 8, 566, 1156, 1525
HspAI GCGC 1 cut(s) 1248
KspAI GTTAAC 1 cut(s) 1539
Kzo9I GATC 3 cut(s) 690, 1342, 1390
LmnI GCTCC 1 cut(s) 1094
Lsp1109I GCAGC 3 cut(s) 852, 1008, 1237
MaeI CTAG 3 cut(s) 723, 1367, 1517
MaeII ACGT 1 cut(s) 1099
MaeIII GTNAC 3 cut(s) 485, 802, 1100
MalI GATC 3 cut(s) 692, 1344, 1392
MbiI CCGCTC 1 cut(s) 1169
MboI GATC 3 cut(s) 690, 1342, 1390
MboII GAAGA 5 cut(s) 188, 601, 804, 1112, 1580
MhlI GDGCHC 1 cut(s) 1282
MlsI TGGCCA 2 cut(s) 920, 1179
MluNI TGGCCA 2 cut(s) 920, 1179
MnlI CCTC 6 cut(s) 875, 1102, 1211, 1254, 1292, 1518
Mox20I TGGCCA 2 cut(s) 920, 1179
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 2 cut(s) 920, 1179
Msp20I TGGCCA 2 cut(s) 920, 1179
MspI CCGG 4 cut(s) 63, 1065, 1440, 1476
MspR9I CCNGG 2 cut(s) 64, 1065
MvnI CGCG 1 cut(s) 1248
MwoI GCNNNNNNNGC 5 cut(s) 917, 1032, 1154, 1418, 1509
NciI CCSGG 2 cut(s) 64, 1065
NcoI CCATGG 1 cut(s) 1152
NdeI CATATG 1 cut(s) 189
NdeII GATC 3 cut(s) 690, 1342, 1390
NheI GCTAGC 1 cut(s) 1366
NlaIII CATG 4 cut(s) 8, 566, 1156, 1525
NlaIV GGNNCC 2 cut(s) 504, 1279
NmuCI GTSAC 1 cut(s) 485
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 836
PcsI WCGNNNNNNNCGW 2 cut(s) 539, 1200
PinAI ACCGGT 1 cut(s) 1475
PkrI GCNGC 3 cut(s) 842, 998, 1252
PpuMI RGGWCCY 1 cut(s) 502
PshBI ATTAAT 1 cut(s) 948
PsiI TTATAA 1 cut(s) 902
Psp5II RGGWCCY 1 cut(s) 502
PspFI CCCAGC 2 cut(s) 1402, 1457
PspN4I GGNNCC 2 cut(s) 504, 1279
PspPI GGNCC 2 cut(s) 60, 502
PspPPI RGGWCCY 1 cut(s) 502
PsrI GAACNNNNNNTAC 2 cut(s) 769, 801
PstI CTGCAG 1 cut(s) 842
PstNI CAGNNNCTG 1 cut(s) 1418
RsaI GTAC 2 cut(s) 1222, 1382
RsaNI GTAC 2 cut(s) 1221, 1381
SatI GCNGC 3 cut(s) 841, 997, 1251
Sau3AI GATC 3 cut(s) 690, 1342, 1390
Sau96I GGNCC 2 cut(s) 60, 502
ScrFI CCNGG 2 cut(s) 64, 1065
SduI GDGCHC 1 cut(s) 1282
SfcI CTRYAG 1 cut(s) 838
SinI GGWCC 2 cut(s) 60, 502
SmlI CTYRAG 2 cut(s) 1497, 1561
SmoI CTYRAG 2 cut(s) 1497, 1561
SseBI AGGCCT 1 cut(s) 836
SsiI CCGC 2 cut(s) 1132, 1167
SspI AATATT 4 cut(s) 102, 438, 735, 960
SspMI CTAG 3 cut(s) 723, 1367, 1517
StuI AGGCCT 1 cut(s) 836
StyD4I CCNGG 2 cut(s) 62, 1063
StyI CCWWGG 2 cut(s) 1152, 1359
TaaI ACNGT 2 cut(s) 627, 1447
TaiI ACGT 1 cut(s) 1102
TaqI TCGA 3 cut(s) 712, 1203, 1284
TatI WGTACW 1 cut(s) 1380
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 3 cut(s) 840, 996, 1250
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 9 cut(s) 21, 133, 176, 251, 274, 333, 579, 799, 1179
TspGWI ACGGA 1 cut(s) 474
VpaK11BI GGWCC 2 cut(s) 60, 502
VspI ATTAAT 1 cut(s) 948
XapI RAATTY 6 cut(s) 421, 662, 708, 727, 1005, 1205
XmiI GTMKAC 1 cut(s) 68
XspI CTAG 3 cut(s) 723, 1367, 1517
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.