pycom01g12400

Ribulose bisphosphate carboxylase oxygenase activase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0019789
Physical Location & Seq
Forward (+)
13127837 .. 13129404
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g12400.1

Sequence Viewer

Length: 1119 bp
ATGGGTTGCTGGTGTATGCATTTAACTAGATGCAATATTTGTGCATTTGGTAAGCATCCGAAGGGGAACACGGAGGAGAGAAAATCAGAGAGAAAAGAGTGGCATCTTGGGGTTGGTGTATCATGTACTTGTTATTATTCTCATAGTAAAGAGCAATATCTCTCTGGGGACGTAGGCAGGATTTTGACGAAACTCGTAAATTTTTCGGTGTCTTTATTTCTTGTTTATTTTATTATGTTCAACTATGGTTTACAAAGGCACAACATGATAAAAACTAATAATCCTTCAACCGATAGTATCATAAGTCTAGTCAATGCAGAGAAAATGAATACATTTCTATACTATGAATATGGACCCACATATCAAAGAAAGAGTGCACATTATCACTGGTCTAGGTTGACAACGTACGTGACAATATACCATGCCCCACTGATATGCAAATTCTGCCATGAGAAAGAAGATTCCCCAAATACCAGGATAGGCATGTGTTGGCCAACACCCGAGGGGATAAATAAGGCTTATAAATATAAAAGAATAACTAATATGCAAATAAGGACCGTAAAATTGAATGAGACAAAGGAGTGGGTCCTACACCACCAGGACTCAAAGATGCCGATGCGAAAGTGCCTGGACGTCAGGATTGTATGCCTCGATTCTAAATATAATAAAACAGTTATCAACATACTAACCCCCAGGTTTTATGAAAATACATATATTATGATAAACATAGGTTTTCCGAAACCTAGCATGTTGTGCAATATCTCAAATCAGAACTTACCCTATGCCGGCTCCCCGTCTCTGAGCAGACAGTCAGAGGAAAATACACTTCAGGCCCCATGCCGGCTCCCCATCTCTGTGCTAAATAGCCAGAGGAAACACACTCCAGGCCCTATGCCAACACCAAACCGTAGCCCAGGACGGATCAGATCTATCCCTACGTCCTGTAATATTGAAAATCAACTTCATAGTATAAAGTCATCCATCATCTATACTATAAAGAGGTGTTCTAAACATGTTCTAAATATCATATCGTCATCCATCAGATATTCTATAAGAACATGGGTTATAGGAAAAATAGTAATAATTCAAACTAGCCTCAGTAAGCATGTTATCTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

373

Amino Acids

43.03

Weight (kDa)

9.62

Isoelectric Point (pI)

52.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019789)

Species Orthologous Gene IDs
malus_domestica MD11G1202400.v1.1
pyrus_communis pycom01g11970 pycom01g12130 pycom01g12400 pycom01g12410 pycom02g18500 pycom11g01060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 522
AatII GACGTC 1 cut(s) 636
AclWI GGATC 1 cut(s) 929
AcoI YGGCCR 1 cut(s) 491
AcsI RAATTY 2 cut(s) 199, 440
AcuI CTGAAG 1 cut(s) 812
AcyI GRCGYC 1 cut(s) 633
AfaI GTAC 2 cut(s) 127, 407
AfiI CCNNNNNNNGG 2 cut(s) 785, 840
AflIII ACRYGT 1 cut(s) 1012
AgsI TTSAA 5 cut(s) 241, 288, 568, 953, 1088
AjnI CCWGG 6 cut(s) 473, 597, 627, 692, 883, 913
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 2 cut(s) 566, 801
Alw44I GTGCAC 1 cut(s) 375
AlwI GGATC 1 cut(s) 929
Ama87I CYCGRG 1 cut(s) 500
AoxI GGCC 3 cut(s) 491, 831, 886
ApaLI GTGCAC 1 cut(s) 375
ApoI RAATTY 2 cut(s) 199, 440
AspS9I GGNCC 5 cut(s) 353, 555, 586, 832, 887
AvaI CYCGRG 1 cut(s) 500
AvaII GGWCC 3 cut(s) 353, 555, 586
BaeGI GKGCMC 1 cut(s) 379
BalI TGGCCA 1 cut(s) 493
Bbv12I GWGCWC 1 cut(s) 379
BccI CCATC 3 cut(s) 857, 989, 1046
BciT130I CCWGG 6 cut(s) 475, 599, 629, 694, 885, 915
BcoDI GTCTC 2 cut(s) 566, 801
BfaI CTAG 5 cut(s) 27, 308, 393, 744, 1092
BglII AGATCT 1 cut(s) 926
Bme1390I CCNGG 6 cut(s) 475, 599, 629, 694, 885, 915
Bme18I GGWCC 3 cut(s) 353, 555, 586
BmeT110I CYCGRG 1 cut(s) 500
BmgT120I GGNCC 5 cut(s) 353, 555, 586, 832, 887
BmiI GGNNCC 5 cut(s) 355, 587, 790, 834, 845
BmrFI CCNGG 6 cut(s) 475, 599, 629, 694, 885, 915
BmsI GCATC 5 cut(s) 20, 64, 112, 600, 606
BpmI CTGGAG 1 cut(s) 867
BsaAI YACGTR 1 cut(s) 409
BsaHI GRCGYC 1 cut(s) 633
BsaJI CCNNGG 3 cut(s) 501, 692, 913
Bsc4I CCNNNNNNNGG 2 cut(s) 785, 840
Bse118I RCCGGY 2 cut(s) 785, 840
Bse1I ACTGG 1 cut(s) 392
BseBI CCWGG 6 cut(s) 475, 599, 629, 694, 885, 915
BseDI CCNNGG 3 cut(s) 501, 692, 913
BseGI GGATG 3 cut(s) 55, 977, 1034
BseLI CCNNNNNNNGG 2 cut(s) 785, 840
BseMII CTCAG 2 cut(s) 791, 1111
BseNI ACTGG 1 cut(s) 392
BseRI GAGGAG 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 379
BshFI GGCC 3 cut(s) 493, 833, 888
BsiHKAI GWGCWC 1 cut(s) 379
BsiHKCI CYCGRG 1 cut(s) 500
BsiSI CCGG 2 cut(s) 786, 841
BsiWI CGTACG 1 cut(s) 405
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 2 cut(s) 785, 840
BsmAI GTCTC 2 cut(s) 566, 801
BsmBI CGTCTC 1 cut(s) 801
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 3 cut(s) 493, 833, 888
BsoBI CYCGRG 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 2 cut(s) 921, 926
BspANI GGCC 3 cut(s) 493, 833, 888
BspCNI CTCAG 2 cut(s) 792, 1110
BspLI GGNNCC 5 cut(s) 355, 587, 790, 834, 845
BspPI GGATC 1 cut(s) 929
BsrFI RCCGGY 2 cut(s) 785, 840
BsrI ACTGG 1 cut(s) 392
BssAI RCCGGY 2 cut(s) 785, 840
BssECI CCNNGG 3 cut(s) 501, 692, 913
BssMI GATC 2 cut(s) 921, 926
BssNI GRCGYC 1 cut(s) 633
Bst2UI CCWGG 6 cut(s) 475, 599, 629, 694, 885, 915
Bst4CI ACNGT 4 cut(s) 559, 673, 810, 908
BstACI GRCGYC 1 cut(s) 633
BstAPI GCANNNNNTGC 2 cut(s) 444, 753
BstBAI YACGTR 1 cut(s) 409
BstC8I GCNNGC 2 cut(s) 787, 842
BstDEI CTNAG 2 cut(s) 800, 1097
BstF5I GGATG 3 cut(s) 55, 977, 1034
BstKTI GATC 2 cut(s) 924, 929
BstMAI GTCTC 2 cut(s) 566, 801
BstMBI GATC 2 cut(s) 921, 926
BstMWI GCNNNNNNNGC 2 cut(s) 444, 753
BstNI CCWGG 6 cut(s) 475, 599, 629, 694, 885, 915
BstNSI RCATGY 4 cut(s) 487, 751, 1016, 1109
BstSCI CCNGG 6 cut(s) 473, 597, 627, 692, 883, 913
BstSLI GKGCMC 1 cut(s) 379
BstX2I RGATCY 1 cut(s) 926
BstYI RGATCY 1 cut(s) 926
BsuRI GGCC 3 cut(s) 493, 833, 888
BtsCI GGATG 3 cut(s) 55, 977, 1034
BtsIMutI CAGTG 2 cut(s) 385, 428
Cac8I GCNNGC 2 cut(s) 787, 842
Cfr10I RCCGGY 2 cut(s) 785, 840
Cfr13I GGNCC 5 cut(s) 353, 555, 586, 832, 887
Csp6I GTAC 2 cut(s) 126, 406
CviJI RGCY 9 cut(s) 493, 518, 789, 833, 844, 867, 888, 912, 1095
CviKI_1 RGCY 9 cut(s) 493, 518, 789, 833, 844, 867, 888, 912, 1095
CviQI GTAC 2 cut(s) 126, 406
DdeI CTNAG 2 cut(s) 800, 1097
DpnI GATC 2 cut(s) 923, 928
DpnII GATC 2 cut(s) 921, 926
EaeI YGGCCR 1 cut(s) 491
Eco47I GGWCC 3 cut(s) 353, 555, 586
Eco57I CTGAAG 1 cut(s) 812
Eco88I CYCGRG 1 cut(s) 500
EcoO109I RGGNCCY 3 cut(s) 586, 832, 887
EcoRII CCWGG 6 cut(s) 473, 597, 627, 692, 883, 913
EcoT22I ATGCAT 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 801
FaqI GGGAC 1 cut(s) 182
FokI GGATG 3 cut(s) 42, 964, 1021
FspBI CTAG 5 cut(s) 27, 308, 393, 744, 1092
GsuI CTGGAG 1 cut(s) 867
HaeIII GGCC 3 cut(s) 493, 833, 888
HapII CCGG 2 cut(s) 786, 841
Hin1I GRCGYC 1 cut(s) 633
HincII GTYRAC 1 cut(s) 399
HindII GTYRAC 1 cut(s) 399
HinfI GANTC 3 cut(s) 461, 602, 653
HpaII CCGG 2 cut(s) 786, 841
Hpy166II GTNNAC 3 cut(s) 251, 377, 399
Hpy188I TCNGA 8 cut(s) 60, 88, 738, 771, 801, 814, 926, 1043
Hpy188III TCNNGA 1 cut(s) 637
Hpy8I GTNNAC 3 cut(s) 251, 377, 399
HpyAV CCTTC 2 cut(s) 55, 294
HpyCH4III ACNGT 4 cut(s) 559, 673, 810, 908
HpyCH4IV ACGT 5 cut(s) 171, 404, 408, 633, 938
HpyCH4V TGCA 8 cut(s) 19, 33, 44, 317, 377, 438, 547, 756
HpyF10VI GCNNNNNNNGC 2 cut(s) 444, 753
HpyF3I CTNAG 2 cut(s) 800, 1097
HpySE526I ACGT 5 cut(s) 171, 404, 408, 633, 938
Hsp92I GRCGYC 1 cut(s) 633
KroI GCCGGC 2 cut(s) 785, 840
KroNI GCCGGC 2 cut(s) 787, 842
Kzo9I GATC 2 cut(s) 921, 926
LmnI GCTCC 2 cut(s) 794, 849
LweI GCATC 5 cut(s) 20, 64, 112, 600, 606
MaeI CTAG 5 cut(s) 27, 308, 393, 744, 1092
MaeII ACGT 5 cut(s) 171, 404, 408, 633, 938
MaeIII GTNAC 1 cut(s) 409
MalI GATC 2 cut(s) 923, 928
MboI GATC 2 cut(s) 921, 926
MboII GAAGA 1 cut(s) 470
MflI RGATCY 1 cut(s) 926
MhlI GDGCHC 1 cut(s) 379
MlsI TGGCCA 1 cut(s) 493
MluCI AATT 4 cut(s) 199, 440, 563, 1083
MluNI TGGCCA 1 cut(s) 493
MlyI GAGTC 1 cut(s) 596
MnlI CCTC 7 cut(s) 67, 496, 659, 808, 864, 993, 1106
Mox20I TGGCCA 1 cut(s) 493
Mph1103I ATGCAT 1 cut(s) 21
MroNI GCCGGC 2 cut(s) 785, 840
MscI TGGCCA 1 cut(s) 493
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 2 cut(s) 433, 854
Msp20I TGGCCA 1 cut(s) 493
MspI CCGG 2 cut(s) 786, 841
MspR9I CCNGG 6 cut(s) 475, 599, 629, 694, 885, 915
MvaI CCWGG 6 cut(s) 475, 599, 629, 694, 885, 915
MwoI GCNNNNNNNGC 2 cut(s) 444, 753
NaeI GCCGGC 2 cut(s) 787, 842
NdeII GATC 2 cut(s) 921, 926
NgoMIV GCCGGC 2 cut(s) 785, 840
NlaIV GGNNCC 5 cut(s) 355, 587, 790, 834, 845
NmuCI GTSAC 1 cut(s) 409
NsiI ATGCAT 1 cut(s) 21
NspI RCATGY 4 cut(s) 487, 751, 1016, 1109
PciI ACATGT 1 cut(s) 1012
PdiI GCCGGC 2 cut(s) 787, 842
PfeI GAWTC 2 cut(s) 461, 653
Pfl23II CGTACG 1 cut(s) 405
PleI GAGTC 1 cut(s) 596
PpsI GAGTC 1 cut(s) 596
Ppu21I YACGTR 1 cut(s) 409
PpuMI RGGWCCY 1 cut(s) 586
PscI ACATGT 1 cut(s) 1012
PsiI TTATAA 1 cut(s) 522
Psp5II RGGWCCY 1 cut(s) 586
Psp6I CCWGG 6 cut(s) 473, 597, 627, 692, 883, 913
PspGI CCWGG 6 cut(s) 473, 597, 627, 692, 883, 913
PspLI CGTACG 1 cut(s) 405
PspN4I GGNNCC 5 cut(s) 355, 587, 790, 834, 845
PspPI GGNCC 5 cut(s) 353, 555, 586, 832, 887
PspPPI RGGWCCY 1 cut(s) 586
PsuI RGATCY 1 cut(s) 926
RsaI GTAC 2 cut(s) 127, 407
RsaNI GTAC 2 cut(s) 126, 406
RseI CAYNNNNRTG 2 cut(s) 433, 854
SaqAI TTAA 1 cut(s) 23
Sau3AI GATC 2 cut(s) 921, 926
Sau96I GGNCC 5 cut(s) 353, 555, 586, 832, 887
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 6 cut(s) 475, 599, 629, 694, 885, 915
SduI GDGCHC 1 cut(s) 379
SfaNI GCATC 5 cut(s) 20, 64, 112, 600, 606
SinI GGWCC 3 cut(s) 353, 555, 586
SmiMI CAYNNNNRTG 2 cut(s) 433, 854
Sse9I AATT 4 cut(s) 199, 440, 563, 1083
SspI AATATT 2 cut(s) 37, 949
SspMI CTAG 5 cut(s) 27, 308, 393, 744, 1092
StyD4I CCNGG 6 cut(s) 473, 597, 627, 692, 883, 913
TaaI ACNGT 4 cut(s) 559, 673, 810, 908
TaiI ACGT 5 cut(s) 174, 407, 411, 636, 941
TaqI TCGA 1 cut(s) 651
TasI AATT 4 cut(s) 199, 440, 563, 1083
TatI WGTACW 1 cut(s) 125
TfiI GAWTC 2 cut(s) 461, 653
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 2 cut(s) 392, 435
TseFI GTSAC 1 cut(s) 409
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 4 cut(s) 341, 360, 717, 953
TspGWI ACGGA 2 cut(s) 86, 934
TspRI CASTG 2 cut(s) 392, 435
VneI GTGCAC 1 cut(s) 375
VpaK11BI GGWCC 3 cut(s) 353, 555, 586
XapI RAATTY 2 cut(s) 199, 440
XceI RCATGY 4 cut(s) 487, 751, 1016, 1109
XspI CTAG 5 cut(s) 27, 308, 393, 744, 1092
ZraI GACGTC 1 cut(s) 634
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.