pycom01g12410

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
13129865 .. 13132621
2757 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g12410.18

Sequence Viewer

Length: 1917 bp
ATGGGTTTAGGGTTAACGGGTCGAAGGTTTTGGGCTTGGCAGGAAAGGCCCAAAGACCTTGGGTTTGGTGGTTCACCGGATTCCAAGGAAGGAGAAGGCCGGATTTCGGCCGAAGAATTCCCAAGCTCCGATGGAGCTCAAAACTCAACCAAAACATGTCATTCAATATACCAAATTGAAGCCCCAAAGGTAAGGAATCGAAATATACCCTTGGTTCCCATCATCGTGCCCGGAGTTGGCCGGAAAACAGCCTGGAAGCCATGGGTGTCTGCCGGAAACTGGGAAAGTTGTAGTGAGACAAAGAGATTAATACCTTGCACGTCGGCCAACTCGTCGTGGTTTGGCCGGAAATTGCCTCGAAAGGGGCGGTGCTCACCGGAAAATTGGGGAAAAGTCTATGAGGTGGTTGCTTCATGGTTTGACATCCAAAACACAACCACAGGGTCAGAACATAACTATAGGGATGAAAAGAGAAGAACTCGTCCGAGTTTCTCTGTGTTCCACATAGCCGAAGAGGGAGAGAGAGCTAACGTGATGATGATGGTGATGCTGTCGTCGTTGATGAGGTGTGGGCACGGGTGTGTGTGTGTGTGCGCGTTCTTGTCCGAGAAAAGAGCACCGAGAGGGGGGATGGAGAGATCACAGAGGAAGAAAGAGAGAAGAGAGACTTTTAGAAGATATAAAAGAAAGGGAAAGGGAATCGGGGGGGGGGGGGGGGAACAAAACAGGGGGTGGAAAGTATCCCCCAAACTTAGTGAAAATACAAAAATACCCTTTTTCTTCCGTAATTCCCGGGATGGGTTGTTACACGATTTACCTTTATTTCTCTGCCCCACTGTTTGTTTAATCATGTATATTGTTTTCCACCTCCCTATATTTATGATTTACCTCACAATAGTTCTTACTAGAAAATGTGTCCGCGCTTCGCTTTGCACAGAAAGATGCGCTAAAAAGAAGGTAAGAACGGAATCACACCCTCAAATGCGAAAAAAAAAAAACATATGCATATTCCTTGAAGGAAAATTTCTAGGCCCTTGTTATATTATTCCTCTTGCAAGTATTGTAAAACTCAAAAGCTTACTGTCCAAAACCAGAAACAATTTGTACCATTTACATGCATGTGCAAGATATTTTGTTTTGCATTTTTATAATCAAGTAGCAAGCAAAATTACAAACTTGCAGCAACCAAACACAGAACATTTTGCATGGAAGCTAACAGTAGAGGTCTGTGAATTTAGCCTCTGTCCTCCTCCTCAGTCAAAAAAATTACAAAAACATAGTAGCTTTTCTAAAAAATGCATGATGAAATGGATACATAGTTTTCATGCAGAGAGAGAGAGACATTATATCTTAGGTACATGTATAATACACAAATTTGATGTGCGCCTAAGTACATGTATAATACACAACTTGGACAATAATCAAAAGAAAGCACTTTTAGTTGTTTCAAAATTGGAGAAGACCACTTACGAAGAAAACTATAATATAAATGTGAATTGCAAATATAAATCCAATTTTCAAACAAAATTCACCAATATAAATCTCTTTGATGGAATAAATCCTGATGTTGTCACTTATAATACACTTATTGAAGTTCATAGCAAAGCAGGTCGGCTAAAAGATGCATATAAGTTTTTGAAAATGATGCTCGATGCAGGCTGCACCCCGAAACATGTTACTGACACGACTTTAGATTTTCTGAGCAAGGAGATTGAGAAAATGATGTACCAGAAGGCATCCATGTCAACTGTCGTTCAACCTGCCATGACTTTCGTTTCGGTTCATAAATGTGCCTTTTCGACCTATAATCATGTCATGTCAAACTCCAGGTCAGTACCTACTAAACGGTTAGAATGTAACGTAACTATAATATTTGTTTTTTTTCCAAAACTCAGAAATATAATTGAGCTTTGTTAA

Protein Analysis

639

Amino Acids

73.34

Weight (kDa)

9.72

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019789)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1149, 1578
Acc36I ACCTGC 2 cut(s) 1598, 1768
AccII CGCG 2 cut(s) 596, 921
AciI CCGC 2 cut(s) 367, 919
AcoI YGGCCR 4 cut(s) 108, 238, 324, 343
AcsI RAATTY 5 cut(s) 116, 1022, 1232, 1373, 1526
AfaI GTAC 5 cut(s) 1106, 1357, 1393, 1727, 1836
AfiI CCNNNNNNNGG 6 cut(s) 106, 236, 279, 362, 626, 798
AflIII ACRYGT 4 cut(s) 155, 1358, 1394, 1672
AgsI TTSAA 8 cut(s) 165, 179, 1016, 1449, 1520, 1592, 1639, 1757
AjiI CACGTC 1 cut(s) 321
AjnI CCWGG 2 cut(s) 251, 1826
AleI CACNNNNGTG 1 cut(s) 579
AluBI AGCT 7 cut(s) 126, 137, 527, 1077, 1213, 1284, 1909
AluI AGCT 7 cut(s) 126, 137, 527, 1077, 1213, 1284, 1909
Alw21I GWGCWC 3 cut(s) 139, 374, 619
Alw26I GTCTC 3 cut(s) 290, 659, 1333
Ama87I CYCGRG 1 cut(s) 792
AoxI GGCC 7 cut(s) 47, 97, 108, 238, 324, 343, 1030
ApeKI GCWGC 2 cut(s) 1180, 1659
ApoI RAATTY 5 cut(s) 116, 1022, 1232, 1373, 1526
ArsI GACNNNNNNTTYG 6 cut(s) 47, 79, 1759, 1791, 1814, 1846
AseI ATTAAT 1 cut(s) 308
AspLEI GCGC 4 cut(s) 596, 923, 947, 1386
AspS9I GGNCC 2 cut(s) 48, 1031
AsuC2I CCSGG 3 cut(s) 231, 793, 794
AsuHPI GGTGA 4 cut(s) 66, 366, 556, 1522
AvaI CYCGRG 1 cut(s) 792
BaeGI GKGCMC 2 cut(s) 231, 576
BanII GRGCYC 1 cut(s) 139
BarI GAAGNNNNNNTAC 2 cut(s) 1451, 1483
BbsI GAAGAC 1 cut(s) 1466
Bbv12I GWGCWC 3 cut(s) 139, 374, 619
BbvI GCAGC 2 cut(s) 1192, 1646
BccI CCATC 6 cut(s) 125, 227, 535, 625, 791, 1544
BciT130I CCWGG 2 cut(s) 253, 1828
BciVI GTATCC 2 cut(s) 751, 1305
BcnI CCSGG 3 cut(s) 231, 793, 794
BcoDI GTCTC 3 cut(s) 290, 659, 1333
BfaI CTAG 2 cut(s) 906, 1028
BfmI CTRYAG 1 cut(s) 457
BfuAI ACCTGC 2 cut(s) 1598, 1768
BfuI GTATCC 2 cut(s) 751, 1305
BisI GCNGC 2 cut(s) 1181, 1660
BlsI GCNGC 2 cut(s) 1182, 1661
Bme1390I CCNGG 5 cut(s) 231, 253, 793, 794, 1828
BmeT110I CYCGRG 1 cut(s) 792
BmgBI CACGTC 1 cut(s) 321
BmgT120I GGNCC 2 cut(s) 48, 1031
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 5 cut(s) 231, 253, 793, 794, 1828
BmrI ACTGGG 1 cut(s) 289
BmsI GCATC 6 cut(s) 537, 932, 1612, 1635, 1642, 1745
BmuI ACTGGG 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 1466
BplI GAGNNNNNCTC 2 cut(s) 463, 495
BpmI CTGGAG 1 cut(s) 1810
BpuMI CCSGG 3 cut(s) 231, 793, 794
BsaJI CCNNGG 5 cut(s) 58, 84, 210, 260, 792
BsaWI WCCGGW 2 cut(s) 76, 376
Bsc4I CCNNNNNNNGG 6 cut(s) 106, 236, 279, 362, 626, 798
Bse1I ACTGG 1 cut(s) 284
BseBI CCWGG 2 cut(s) 253, 1828
BseDI CCNNGG 5 cut(s) 58, 84, 210, 260, 792
BseGI GGATG 5 cut(s) 423, 469, 636, 802, 1736
BseLI CCNNNNNNNGG 6 cut(s) 106, 236, 279, 362, 626, 798
BseMII CTCAG 3 cut(s) 1268, 1691, 1906
BseNI ACTGG 1 cut(s) 284
BseRI GAGGAG 2 cut(s) 1239, 1242
BseSI GKGCMC 2 cut(s) 231, 576
BseX3I CGGCCG 1 cut(s) 108
BseXI GCAGC 2 cut(s) 1192, 1646
BsgI GTGCAG 1 cut(s) 1645
Bsh1236I CGCG 2 cut(s) 596, 921
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 7 cut(s) 49, 99, 110, 240, 326, 345, 1032
BsiEI CGRYCG 1 cut(s) 111
BsiHKAI GWGCWC 3 cut(s) 139, 374, 619
BsiHKCI CYCGRG 1 cut(s) 792
BsiSI CCGG 8 cut(s) 77, 100, 231, 241, 273, 346, 377, 793
BslI CCNNNNNNNGG 6 cut(s) 106, 236, 279, 362, 626, 798
BsmAI GTCTC 3 cut(s) 290, 659, 1333
BsnI GGCC 7 cut(s) 49, 99, 110, 240, 326, 345, 1032
BsoBI CYCGRG 1 cut(s) 792
Bsp1286I GDGCHC 5 cut(s) 139, 231, 374, 576, 619
Bsp143I GATC 1 cut(s) 638
Bsp19I CCATGG 1 cut(s) 260
BspACI CCGC 2 cut(s) 367, 919
BspANI GGCC 7 cut(s) 49, 99, 110, 240, 326, 345, 1032
BspCNI CTCAG 3 cut(s) 1267, 1692, 1905
BspFNI CGCG 2 cut(s) 596, 921
BspLI GGNNCC 1 cut(s) 216
BspMI ACCTGC 2 cut(s) 1598, 1768
BsrI ACTGG 1 cut(s) 284
BssECI CCNNGG 5 cut(s) 58, 84, 210, 260, 792
BssMI GATC 1 cut(s) 638
BssT1I CCWWGG 4 cut(s) 58, 84, 210, 260
Bst2UI CCWGG 2 cut(s) 253, 1828
Bst4CI ACNGT 5 cut(s) 838, 1083, 1219, 1750, 1848
Bst6I CTCTTC 2 cut(s) 507, 655
BstC8I GCNNGC 2 cut(s) 1162, 1657
BstDEI CTNAG 6 cut(s) 752, 1254, 1351, 1388, 1700, 1892
BstDSI CCRYGG 1 cut(s) 260
BstF5I GGATG 5 cut(s) 423, 469, 636, 802, 1736
BstFNI CGCG 2 cut(s) 596, 921
BstHHI GCGC 4 cut(s) 596, 923, 947, 1386
BstKTI GATC 1 cut(s) 641
BstMAI GTCTC 3 cut(s) 290, 659, 1333
BstMBI GATC 1 cut(s) 638
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 2 cut(s) 253, 1828
BstNSI RCATGY 6 cut(s) 159, 1118, 1122, 1362, 1398, 1676
BstSCI CCNGG 5 cut(s) 229, 251, 791, 792, 1826
BstSFI CTRYAG 1 cut(s) 457
BstSLI GKGCMC 2 cut(s) 231, 576
BstUI CGCG 2 cut(s) 596, 921
BstV1I GCAGC 2 cut(s) 1192, 1646
BstV2I GAAGAC 1 cut(s) 1466
BstZI CGGCCG 1 cut(s) 108
BsuI GTATCC 2 cut(s) 751, 1305
BsuRI GGCC 7 cut(s) 49, 99, 110, 240, 326, 345, 1032
BtgI CCRYGG 1 cut(s) 260
BtrI CACGTC 1 cut(s) 321
BtsCI GGATG 5 cut(s) 423, 469, 636, 802, 1736
BtsIMutI CAGTG 1 cut(s) 834
BveI ACCTGC 2 cut(s) 1598, 1768
Cac8I GCNNGC 2 cut(s) 1162, 1657
CfoI GCGC 4 cut(s) 596, 923, 947, 1386
Cfr13I GGNCC 2 cut(s) 48, 1031
Cfr9I CCCGGG 1 cut(s) 792
Csp6I GTAC 5 cut(s) 1105, 1356, 1392, 1726, 1835
CviQI GTAC 5 cut(s) 1105, 1356, 1392, 1726, 1835
DdeI CTNAG 6 cut(s) 752, 1254, 1351, 1388, 1700, 1892
DpnI GATC 1 cut(s) 640
DpnII GATC 1 cut(s) 638
EaeI YGGCCR 4 cut(s) 108, 238, 324, 343
EagI CGGCCG 1 cut(s) 108
Eam1104I CTCTTC 2 cut(s) 507, 655
EarI CTCTTC 2 cut(s) 507, 655
Ecl136II GAGCTC 1 cut(s) 137
EclXI CGGCCG 1 cut(s) 108
Eco130I CCWWGG 4 cut(s) 58, 84, 210, 260
Eco24I GRGCYC 1 cut(s) 139
Eco52I CGGCCG 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 137
Eco88I CYCGRG 1 cut(s) 792
EcoICRI GAGCTC 1 cut(s) 137
EcoO109I RGGNCCY 1 cut(s) 1031
EcoRI GAATTC 1 cut(s) 116
EcoRII CCWGG 2 cut(s) 251, 1826
EcoT14I CCWWGG 4 cut(s) 58, 84, 210, 260
EcoT22I ATGCAT 4 cut(s) 1007, 1120, 1301, 1627
EcoT38I GRGCYC 1 cut(s) 139
ErhI CCWWGG 4 cut(s) 58, 84, 210, 260
FalI AAGNNNNNCTT 2 cut(s) 652, 684
FauNDI CATATG 1 cut(s) 1001
Fnu4HI GCNGC 2 cut(s) 1181, 1660
FokI GGATG 5 cut(s) 410, 476, 643, 809, 1723
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 2 cut(s) 1181, 1660
FspBI CTAG 2 cut(s) 906, 1028
GlaI GCGC 4 cut(s) 595, 922, 946, 1385
GluI GCNGC 2 cut(s) 1181, 1660
GsuI CTGGAG 1 cut(s) 1810
HaeIII GGCC 7 cut(s) 49, 99, 110, 240, 326, 345, 1032
HapII CCGG 8 cut(s) 77, 100, 231, 241, 273, 346, 377, 793
HhaI GCGC 4 cut(s) 596, 923, 947, 1386
Hin6I GCGC 4 cut(s) 594, 921, 945, 1384
HinP1I GCGC 4 cut(s) 594, 921, 945, 1384
HincII GTYRAC 2 cut(s) 15, 1746
HindII GTYRAC 2 cut(s) 15, 1746
HindIII AAGCTT 1 cut(s) 1075
HinfI GANTC 4 cut(s) 80, 196, 699, 968
HpaI GTTAAC 1 cut(s) 15
HpaII CCGG 8 cut(s) 77, 100, 231, 241, 273, 346, 377, 793
HphI GGTGA 4 cut(s) 66, 366, 556, 1522
Hpy166II GTNNAC 3 cut(s) 15, 74, 1746
Hpy188I TCNGA 6 cut(s) 130, 448, 486, 607, 1701, 1895
Hpy188III TCNNGA 1 cut(s) 1562
Hpy8I GTNNAC 3 cut(s) 15, 74, 1746
Hpy99I CGWCG 3 cut(s) 325, 337, 559
HpyAV CCTTC 6 cut(s) 18, 83, 89, 949, 1010, 1726
HpyCH4III ACNGT 5 cut(s) 838, 1083, 1219, 1750, 1848
HpyCH4IV ACGT 3 cut(s) 320, 531, 1860
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 6 cut(s) 752, 1254, 1351, 1388, 1700, 1892
HpySE526I ACGT 3 cut(s) 320, 531, 1860
HspAI GCGC 4 cut(s) 594, 921, 945, 1384
KspAI GTTAAC 1 cut(s) 15
Kzo9I GATC 1 cut(s) 638
LmnI GCTCC 2 cut(s) 131, 134
Lsp1109I GCAGC 2 cut(s) 1192, 1646
LweI GCATC 6 cut(s) 537, 932, 1612, 1635, 1642, 1745
MaeI CTAG 2 cut(s) 906, 1028
MaeII ACGT 3 cut(s) 320, 531, 1860
MaeIII GTNAC 5 cut(s) 804, 1570, 1675, 1856, 1861
MalI GATC 1 cut(s) 640
MboI GATC 1 cut(s) 638
MboII GAAGA 9 cut(s) 125, 486, 524, 661, 672, 687, 772, 1471, 1484
MhlI GDGCHC 5 cut(s) 139, 231, 374, 576, 619
Mph1103I ATGCAT 4 cut(s) 1007, 1120, 1301, 1627
MseI TTAA 4 cut(s) 14, 308, 845, 1915
MslI CAYNNNNRTG 5 cut(s) 224, 579, 1113, 1119, 1788
MspI CCGG 8 cut(s) 77, 100, 231, 241, 273, 346, 377, 793
MspR9I CCNGG 5 cut(s) 231, 253, 793, 794, 1828
MvaI CCWGG 2 cut(s) 253, 1828
MvnI CGCG 2 cut(s) 596, 921
MwoI GCNNNNNNNGC 1 cut(s) 46
NciI CCSGG 3 cut(s) 231, 793, 794
NcoI CCATGG 1 cut(s) 260
NdeI CATATG 1 cut(s) 1001
NdeII GATC 1 cut(s) 638
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 1570
NsiI ATGCAT 4 cut(s) 1007, 1120, 1301, 1627
NspI RCATGY 6 cut(s) 159, 1118, 1122, 1362, 1398, 1676
OliI CACNNNNGTG 1 cut(s) 579
PciI ACATGT 4 cut(s) 155, 1358, 1394, 1672
PcsI WCGNNNNNNNCGW 1 cut(s) 329
PfeI GAWTC 4 cut(s) 80, 196, 699, 968
PkrI GCNGC 2 cut(s) 1182, 1661
PscI ACATGT 4 cut(s) 155, 1358, 1394, 1672
PshBI ATTAAT 1 cut(s) 308
PsiI TTATAA 2 cut(s) 1149, 1578
Psp124BI GAGCTC 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 251, 1826
PspGI CCWGG 2 cut(s) 251, 1826
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 2 cut(s) 48, 1031
RsaI GTAC 5 cut(s) 1106, 1357, 1393, 1727, 1836
RsaNI GTAC 5 cut(s) 1105, 1356, 1392, 1726, 1835
RseI CAYNNNNRTG 5 cut(s) 224, 579, 1113, 1119, 1788
SacI GAGCTC 1 cut(s) 139
SaqAI TTAA 4 cut(s) 14, 308, 845, 1915
SatI GCNGC 2 cut(s) 1181, 1660
Sau3AI GATC 1 cut(s) 638
Sau96I GGNCC 2 cut(s) 48, 1031
ScrFI CCNGG 5 cut(s) 231, 253, 793, 794, 1828
SduI GDGCHC 5 cut(s) 139, 231, 374, 576, 619
SfaNI GCATC 6 cut(s) 537, 932, 1612, 1635, 1642, 1745
SfcI CTRYAG 1 cut(s) 457
SmaI CCCGGG 1 cut(s) 794
SmiMI CAYNNNNRTG 5 cut(s) 224, 579, 1113, 1119, 1788
SsiI CCGC 2 cut(s) 367, 919
SspI AATATT 1 cut(s) 1872
SspMI CTAG 2 cut(s) 906, 1028
SstI GAGCTC 1 cut(s) 139
StyD4I CCNGG 5 cut(s) 229, 251, 791, 792, 1826
StyI CCWWGG 4 cut(s) 58, 84, 210, 260
TaaI ACNGT 5 cut(s) 838, 1083, 1219, 1750, 1848
TaiI ACGT 3 cut(s) 323, 534, 1863
TaqI TCGA 5 cut(s) 22, 199, 358, 1650, 1799
TatI WGTACW 1 cut(s) 1391
TfiI GAWTC 4 cut(s) 80, 196, 699, 968
Tru1I TTAA 4 cut(s) 14, 308, 845, 1915
Tru9I TTAA 4 cut(s) 14, 308, 845, 1915
TscAI CASTG 1 cut(s) 841
TseFI GTSAC 1 cut(s) 1570
TseI GCWGC 2 cut(s) 1180, 1659
Tsp45I GTSAC 1 cut(s) 1570
TspDTI ATGAA 6 cut(s) 402, 480, 1313, 1319, 1586, 1772
TspGWI ACGGA 2 cut(s) 773, 980
TspMI CCCGGG 1 cut(s) 792
TspRI CASTG 1 cut(s) 841
VspI ATTAAT 1 cut(s) 308
XapI RAATTY 5 cut(s) 116, 1022, 1232, 1373, 1526
XceI RCATGY 6 cut(s) 159, 1118, 1122, 1362, 1398, 1676
XmaI CCCGGG 1 cut(s) 792
XspI CTAG 2 cut(s) 906, 1028
Zsp2I ATGCAT 4 cut(s) 1007, 1120, 1301, 1627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.