pycom01g14020

GTPase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0018491
Physical Location & Seq
Forward (+)
14325643 .. 14325876
234 bp
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UTR
Exon/CDS
Intron
pycom01g14020.1

Sequence Viewer

Length: 234 bp
ATGACACTGTTATATCCAAACCAAAGTTTGGCGAATTTGATATATGTTGGATACAATGACAATCCTGCTTCAGCTATCCATGTTACTAGAAGAAGATCAGAAGATCATAAAAGGCAAAAAACAGAAAGAAATGTTAGCTGCTTCGTTTTTTGTCCTAAAAATGCAGAAAAATCCCCTCTTTTAAATTCATTCATAGGAAGATATGGCTTTCCCCCTTCACTATACTCAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000001 GO:0000166 GO:0000226 GO:0000287 GO:0001505 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005509 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005783 GO:0005829 GO:0005886 GO:0006464 GO:0006508 GO:0006807 GO:0006810 GO:0006839 GO:0006915 GO:0006928 GO:0006996 GO:0007005 GO:0007006 GO:0007010 GO:0007017 GO:0007018 GO:0007154 GO:0007165 GO:0008088 GO:0008150 GO:0008152 GO:0008219 GO:0008637 GO:0009966 GO:0009987 GO:0010570 GO:0010646 GO:0010821 GO:0010970 GO:0012501 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0016462 GO:0016579 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019538 GO:0019725 GO:0019867 GO:0019896 GO:0022406 GO:0023051 GO:0023052 GO:0030705 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032386 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032592 GO:0032865 GO:0032879 GO:0032886 GO:0032991 GO:0033043 GO:0034640 GO:0034643 GO:0035639 GO:0035794 GO:0036094 GO:0036211 GO:0040008 GO:0042592 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044232 GO:0044233 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046872 GO:0046902 GO:0046907 GO:0046928 GO:0047497 GO:0048308 GO:0048311 GO:0048489 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051056 GO:0051128 GO:0051179 GO:0051234 GO:0051270 GO:0051588 GO:0051640 GO:0051641 GO:0051646 GO:0051648 GO:0051649 GO:0051650 GO:0051654 GO:0051656 GO:0051716 GO:0055081 GO:0055088 GO:0055091 GO:0060237 GO:0060341 GO:0060632 GO:0061024 GO:0065007 GO:0065008 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0072384 GO:0090559 GO:0097159 GO:0097190 GO:0097345 GO:0097367 GO:0097479 GO:0097480 GO:0098573 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:0098930 GO:0099003 GO:0099098 GO:0099111 GO:0099177 GO:0140056 GO:1900428 GO:1901265 GO:1901363 GO:1901564 GO:1902108 GO:1902110 GO:1902513 GO:1902531 GO:1902686 GO:1903338 GO:1903530 GO:1905710 GO:1990456
KEGG Pathways
Metabolic & Signaling
ko04137 ko04214 map04137 map04214
Pfam Domains
Protein Families
EF-hand_5 EF_assoc_1 EF_assoc_2 Ras

Protein Analysis

78

Amino Acids

8.82

Weight (kDa)

9.56

Isoelectric Point (pI)

73.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF_assoc_1 PF08355 1 - 40 2.6e-09 EF hand associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 28
AcsI RAATTY 2 cut(s) 34, 184
AcuI CTGAAG 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 28
AluBI AGCT 2 cut(s) 74, 138
AluI AGCT 2 cut(s) 74, 138
ApeKI GCWGC 1 cut(s) 138
ApoI RAATTY 2 cut(s) 34, 184
BbvI GCAGC 1 cut(s) 125
BciVI GTATCC 1 cut(s) 44
BfaI CTAG 1 cut(s) 87
BfuI GTATCC 1 cut(s) 44
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 28
Bsp143I GATC 2 cut(s) 95, 103
BssMI GATC 2 cut(s) 95, 103
Bst4CI ACNGT 1 cut(s) 9
BstKTI GATC 2 cut(s) 98, 106
BstMBI GATC 2 cut(s) 95, 103
BstV1I GCAGC 1 cut(s) 125
BsuI GTATCC 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 5
CviAII CATG 1 cut(s) 80
CviJI RGCY 3 cut(s) 74, 138, 207
CviKI_1 RGCY 3 cut(s) 74, 138, 207
DpnI GATC 2 cut(s) 97, 105
DpnII GATC 2 cut(s) 95, 103
DraI TTTAAA 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 54
FaeI CATG 1 cut(s) 83
FaiI YATR 9 cut(s) 13, 43, 45, 81, 108, 194, 204, 223, 232
FatI CATG 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 139
FspBI CTAG 1 cut(s) 87
GluI GCNGC 1 cut(s) 139
Hin1II CATG 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 225
HpyCH4III ACNGT 1 cut(s) 9
HpyCH4V TGCA 1 cut(s) 164
Hsp92II CATG 1 cut(s) 83
Kzo9I GATC 2 cut(s) 95, 103
LpnPI CCDG 1 cut(s) 78
Lsp1109I GCAGC 1 cut(s) 125
MaeI CTAG 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 82
MalI GATC 2 cut(s) 97, 105
MboI GATC 2 cut(s) 95, 103
MboII GAAGA 4 cut(s) 102, 105, 113, 210
MluCI AATT 2 cut(s) 34, 184
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 1 cut(s) 186
MseI TTAA 1 cut(s) 182
NdeII GATC 2 cut(s) 95, 103
NlaIII CATG 1 cut(s) 83
PflMI CCANNNNNTGG 1 cut(s) 28
PkrI GCNGC 1 cut(s) 140
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 1 cut(s) 139
Sau3AI GATC 2 cut(s) 95, 103
SetI ASST 2 cut(s) 76, 140
SgeI CNNG 3 cut(s) 77, 92, 99
Sse9I AATT 2 cut(s) 34, 184
SspMI CTAG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 9
TasI AATT 2 cut(s) 34, 184
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TscAI CASTG 1 cut(s) 12
TseI GCWGC 1 cut(s) 138
TspDTI ATGAA 2 cut(s) 177, 181
TspRI CASTG 1 cut(s) 12
Van91I CCANNNNNTGG 1 cut(s) 28
XapI RAATTY 2 cut(s) 34, 184
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.