GTPase activity
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD15G1278200.v1.1 |
| pyrus_communis | pycom01g14020 pycom03g12140 pycom05g12130 pycom07g01220 pycom10g14530 pycom12g12080 pycom13g10270 pycom15g26910 pycom16g17410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 72 |
| AcsI | RAATTY | 4 cut(s) | 103, 175, 325, 573 |
| AcuI | CTGAAG | 1 cut(s) | 195 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 12, 169, 409 |
| AgsI | TTSAA | 4 cut(s) | 505, 748, 792, 816 |
| AjnI | CCWGG | 1 cut(s) | 6 |
| AluBI | AGCT | 6 cut(s) | 65, 215, 279, 433, 508, 826 |
| AluI | AGCT | 6 cut(s) | 65, 215, 279, 433, 508, 826 |
| Alw26I | GTCTC | 1 cut(s) | 353 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 532 |
| AoxI | GGCC | 2 cut(s) | 135, 341 |
| ApaI | GGGCCC | 1 cut(s) | 139 |
| ApeKI | GCWGC | 2 cut(s) | 80, 279 |
| ApoI | RAATTY | 4 cut(s) | 103, 175, 325, 573 |
| AspS9I | GGNCC | 3 cut(s) | 135, 136, 293 |
| AsuHPI | GGTGA | 2 cut(s) | 47, 386 |
| AsuII | TTCGAA | 1 cut(s) | 650 |
| AvaII | GGWCC | 1 cut(s) | 293 |
| BaeGI | GKGCMC | 1 cut(s) | 139 |
| BanII | GRGCYC | 1 cut(s) | 139 |
| BbvI | GCAGC | 2 cut(s) | 67, 266 |
| BceAI | ACGGC | 1 cut(s) | 108 |
| BciT130I | CCWGG | 1 cut(s) | 8 |
| BciVI | GTATCC | 1 cut(s) | 185 |
| BclI | TGATCA | 1 cut(s) | 439 |
| BcoDI | GTCTC | 1 cut(s) | 353 |
| BfaI | CTAG | 1 cut(s) | 228 |
| BfmI | CTRYAG | 1 cut(s) | 81 |
| BfuI | GTATCC | 1 cut(s) | 185 |
| BisI | GCNGC | 2 cut(s) | 81, 280 |
| BlsI | GCNGC | 2 cut(s) | 82, 281 |
| Bme1390I | CCNGG | 1 cut(s) | 8 |
| Bme18I | GGWCC | 1 cut(s) | 293 |
| BmgT120I | GGNCC | 3 cut(s) | 135, 136, 293 |
| BmiI | GGNNCC | 1 cut(s) | 137 |
| BmrFI | CCNGG | 1 cut(s) | 8 |
| BmsI | GCATC | 5 cut(s) | 67, 104, 428, 438, 476 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 49, 81 |
| Bpu14I | TTCGAA | 1 cut(s) | 650 |
| BpuEI | CTTGAG | 1 cut(s) | 695 |
| BsaJI | CCNNGG | 2 cut(s) | 6, 53 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 12, 169, 409 |
| Bse1I | ACTGG | 2 cut(s) | 376, 452 |
| BseBI | CCWGG | 1 cut(s) | 8 |
| BseDI | CCNNGG | 2 cut(s) | 6, 53 |
| BseGI | GGATG | 1 cut(s) | 82 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 12, 169, 409 |
| BseMII | CTCAG | 1 cut(s) | 120 |
| BseNI | ACTGG | 2 cut(s) | 376, 452 |
| BseSI | GKGCMC | 1 cut(s) | 139 |
| BseXI | GCAGC | 2 cut(s) | 67, 266 |
| BshFI | GGCC | 2 cut(s) | 137, 343 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 12, 169, 409 |
| BsmAI | GTCTC | 1 cut(s) | 353 |
| BsnI | GGCC | 2 cut(s) | 137, 343 |
| Bsp119I | TTCGAA | 1 cut(s) | 650 |
| Bsp120I | GGGCCC | 1 cut(s) | 135 |
| Bsp1286I | GDGCHC | 1 cut(s) | 139 |
| Bsp143I | GATC | 4 cut(s) | 236, 244, 439, 778 |
| BspANI | GGCC | 2 cut(s) | 137, 343 |
| BspCNI | CTCAG | 1 cut(s) | 121 |
| BspHI | TCATGA | 2 cut(s) | 141, 769 |
| BspLI | GGNNCC | 1 cut(s) | 137 |
| BspMAI | CTGCAG | 1 cut(s) | 85 |
| BspT104I | TTCGAA | 1 cut(s) | 650 |
| BsrI | ACTGG | 2 cut(s) | 376, 452 |
| BssECI | CCNNGG | 2 cut(s) | 6, 53 |
| BssMI | GATC | 4 cut(s) | 236, 244, 439, 778 |
| BssT1I | CCWWGG | 1 cut(s) | 53 |
| Bst2UI | CCWGG | 1 cut(s) | 8 |
| Bst4CI | ACNGT | 2 cut(s) | 150, 756 |
| Bst6I | CTCTTC | 1 cut(s) | 652 |
| BstBI | TTCGAA | 1 cut(s) | 650 |
| BstC8I | GCNNGC | 1 cut(s) | 435 |
| BstDEI | CTNAG | 1 cut(s) | 129 |
| BstF5I | GGATG | 1 cut(s) | 82 |
| BstKTI | GATC | 4 cut(s) | 239, 247, 442, 781 |
| BstMAI | GTCTC | 1 cut(s) | 353 |
| BstMBI | GATC | 4 cut(s) | 236, 244, 439, 778 |
| BstNI | CCWGG | 1 cut(s) | 8 |
| BstSCI | CCNGG | 1 cut(s) | 6 |
| BstSFI | CTRYAG | 1 cut(s) | 81 |
| BstSLI | GKGCMC | 1 cut(s) | 139 |
| BstV1I | GCAGC | 2 cut(s) | 67, 266 |
| BsuI | GTATCC | 1 cut(s) | 185 |
| BsuRI | GGCC | 2 cut(s) | 137, 343 |
| BtsCI | GGATG | 1 cut(s) | 82 |
| BtsI | GCAGTG | 1 cut(s) | 393 |
| BtsIMutI | CAGTG | 4 cut(s) | 146, 393, 459, 530 |
| Cac8I | GCNNGC | 1 cut(s) | 435 |
| CaiI | CAGNNNCTG | 1 cut(s) | 532 |
| CciI | TCATGA | 2 cut(s) | 141, 769 |
| Cfr13I | GGNCC | 3 cut(s) | 135, 136, 293 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 811 |
| CviAII | CATG | 4 cut(s) | 142, 221, 635, 770 |
| DdeI | CTNAG | 1 cut(s) | 129 |
| DpnI | GATC | 4 cut(s) | 238, 246, 441, 780 |
| DpnII | GATC | 4 cut(s) | 236, 244, 439, 778 |
| DraI | TTTAAA | 1 cut(s) | 324 |
| Eam1104I | CTCTTC | 1 cut(s) | 652 |
| EarI | CTCTTC | 1 cut(s) | 652 |
| Eco130I | CCWWGG | 1 cut(s) | 53 |
| Eco147I | AGGCCT | 1 cut(s) | 343 |
| Eco24I | GRGCYC | 1 cut(s) | 139 |
| Eco47I | GGWCC | 1 cut(s) | 293 |
| Eco57I | CTGAAG | 1 cut(s) | 195 |
| EcoO109I | RGGNCCY | 1 cut(s) | 136 |
| EcoRII | CCWGG | 1 cut(s) | 6 |
| EcoT14I | CCWWGG | 1 cut(s) | 53 |
| EcoT22I | ATGCAT | 1 cut(s) | 121 |
| EcoT38I | GRGCYC | 1 cut(s) | 139 |
| ErhI | CCWWGG | 1 cut(s) | 53 |
| FaeI | CATG | 4 cut(s) | 145, 224, 638, 773 |
| FatI | CATG | 4 cut(s) | 141, 220, 634, 769 |
| FbaI | TGATCA | 1 cut(s) | 439 |
| Fnu4HI | GCNGC | 2 cut(s) | 81, 280 |
| FokI | GGATG | 1 cut(s) | 89 |
| FriOI | GRGCYC | 1 cut(s) | 139 |
| Fsp4HI | GCNGC | 2 cut(s) | 81, 280 |
| FspBI | CTAG | 1 cut(s) | 228 |
| GluI | GCNGC | 2 cut(s) | 81, 280 |
| HaeIII | GGCC | 2 cut(s) | 137, 343 |
| Hin1II | CATG | 4 cut(s) | 145, 224, 638, 773 |
| HindIII | AAGCTT | 1 cut(s) | 824 |
| HinfI | GANTC | 3 cut(s) | 475, 568, 773 |
| HphI | GGTGA | 2 cut(s) | 47, 386 |
| Hpy188I | TCNGA | 3 cut(s) | 130, 582, 778 |
| Hpy188III | TCNNGA | 5 cut(s) | 142, 565, 672, 727, 770 |
| HpyAV | CCTTC | 2 cut(s) | 333, 620 |
| HpyCH4III | ACNGT | 2 cut(s) | 150, 756 |
| HpyCH4V | TGCA | 6 cut(s) | 83, 119, 305, 386, 467, 634 |
| HpyF3I | CTNAG | 1 cut(s) | 129 |
| Hsp92II | CATG | 4 cut(s) | 145, 224, 638, 773 |
| Ksp22I | TGATCA | 1 cut(s) | 439 |
| Kzo9I | GATC | 4 cut(s) | 236, 244, 439, 778 |
| LmnI | GCTCC | 1 cut(s) | 70 |
| Lsp1109I | GCAGC | 2 cut(s) | 67, 266 |
| LweI | GCATC | 5 cut(s) | 67, 104, 428, 438, 476 |
| MaeI | CTAG | 1 cut(s) | 228 |
| MaeIII | GTNAC | 5 cut(s) | 223, 552, 592, 614, 641 |
| MalI | GATC | 4 cut(s) | 238, 246, 441, 780 |
| MboI | GATC | 4 cut(s) | 236, 244, 439, 778 |
| MboII | GAAGA | 5 cut(s) | 243, 246, 484, 600, 639 |
| MhlI | GDGCHC | 1 cut(s) | 139 |
| MluCI | AATT | 6 cut(s) | 48, 103, 175, 325, 511, 573 |
| MmeI | TCCRAC | 1 cut(s) | 169 |
| MnlI | CCTC | 6 cut(s) | 31, 120, 149, 327, 409, 777 |
| Mph1103I | ATGCAT | 1 cut(s) | 121 |
| MseI | TTAA | 4 cut(s) | 114, 152, 323, 399 |
| MspA1I | CMGCKG | 1 cut(s) | 433 |
| MspR9I | CCNGG | 1 cut(s) | 8 |
| MvaI | CCWGG | 1 cut(s) | 8 |
| NdeII | GATC | 4 cut(s) | 236, 244, 439, 778 |
| NlaIII | CATG | 4 cut(s) | 145, 224, 638, 773 |
| NlaIV | GGNNCC | 1 cut(s) | 137 |
| NmuCI | GTSAC | 4 cut(s) | 552, 592, 614, 641 |
| NsiI | ATGCAT | 1 cut(s) | 121 |
| NspV | TTCGAA | 1 cut(s) | 650 |
| PagI | TCATGA | 2 cut(s) | 141, 769 |
| PceI | AGGCCT | 1 cut(s) | 343 |
| PfeI | GAWTC | 3 cut(s) | 475, 568, 773 |
| PkrI | GCNGC | 2 cut(s) | 82, 281 |
| PsiI | TTATAA | 1 cut(s) | 72 |
| Psp6I | CCWGG | 1 cut(s) | 6 |
| PspGI | CCWGG | 1 cut(s) | 6 |
| PspN4I | GGNNCC | 1 cut(s) | 137 |
| PspOMI | GGGCCC | 1 cut(s) | 135 |
| PspPI | GGNCC | 3 cut(s) | 135, 136, 293 |
| PstI | CTGCAG | 1 cut(s) | 85 |
| PstNI | CAGNNNCTG | 1 cut(s) | 532 |
| PvuII | CAGCTG | 1 cut(s) | 433 |
| SaqAI | TTAA | 4 cut(s) | 114, 152, 323, 399 |
| SatI | GCNGC | 2 cut(s) | 81, 280 |
| Sau3AI | GATC | 4 cut(s) | 236, 244, 439, 778 |
| Sau96I | GGNCC | 3 cut(s) | 135, 136, 293 |
| ScrFI | CCNGG | 1 cut(s) | 8 |
| SduI | GDGCHC | 1 cut(s) | 139 |
| SfaNI | GCATC | 5 cut(s) | 67, 104, 428, 438, 476 |
| SfcI | CTRYAG | 1 cut(s) | 81 |
| SfuI | TTCGAA | 1 cut(s) | 650 |
| SinI | GGWCC | 1 cut(s) | 293 |
| SmlI | CTYRAG | 1 cut(s) | 710 |
| SmoI | CTYRAG | 1 cut(s) | 710 |
| Sse9I | AATT | 6 cut(s) | 48, 103, 175, 325, 511, 573 |
| SseBI | AGGCCT | 1 cut(s) | 343 |
| SspMI | CTAG | 1 cut(s) | 228 |
| StuI | AGGCCT | 1 cut(s) | 343 |
| StyD4I | CCNGG | 1 cut(s) | 6 |
| StyI | CCWWGG | 1 cut(s) | 53 |
| TaaI | ACNGT | 2 cut(s) | 150, 756 |
| TaqI | TCGA | 4 cut(s) | 422, 470, 650, 700 |
| TasI | AATT | 6 cut(s) | 48, 103, 175, 325, 511, 573 |
| TfiI | GAWTC | 3 cut(s) | 475, 568, 773 |
| Tru1I | TTAA | 4 cut(s) | 114, 152, 323, 399 |
| Tru9I | TTAA | 4 cut(s) | 114, 152, 323, 399 |
| TscAI | CASTG | 4 cut(s) | 153, 393, 459, 537 |
| TseFI | GTSAC | 4 cut(s) | 552, 592, 614, 641 |
| TseI | GCWGC | 2 cut(s) | 80, 279 |
| Tsp45I | GTSAC | 4 cut(s) | 552, 592, 614, 641 |
| TspDTI | ATGAA | 4 cut(s) | 318, 322, 551, 786 |
| TspRI | CASTG | 4 cut(s) | 153, 393, 459, 537 |
| VpaK11BI | GGWCC | 1 cut(s) | 293 |
| XapI | RAATTY | 4 cut(s) | 103, 175, 325, 573 |
| XspI | CTAG | 1 cut(s) | 228 |
| Zsp2I | ATGCAT | 1 cut(s) | 121 |