pycom01g17010

ABC1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0007906
Physical Location & Seq
Forward (+)
16419353 .. 16423238
3886 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1455 bp
ATGGCCACGCGATCCTTATGGAGAGCCACGAAGCTCGCGCTGTCGGCAACCGCCCTCATCGGCGGCGGCGCGGCGGCGGCGAATGTCGCCACCTCCGACGACCCCGCCATGACTTACAAGCTCTACACCACTGTTCCCCCACGCCTTGTTCGCGGCGCCATGACAGCCGCTGCCATCGCCTTCGATTATGAGTATTCACTGTTGGGGCTTCCTGAAGGAAGCAATGAGAGGGAAAAAGCTAAGCATGAAGTTCACCTCAGGTCTGCGCTTAAACTTCAAGAATTGTGCTTCAAAAATGGAGGAATATATATCAAGCTTGGTCAGCATCTCGGGCAGCTGGAATACTTGGTACCTCAGGAGTATGTCCAGACAATGAGGGAGTCCATGTTGAACAAATGTCCGGTTTCTTCGTATGAACAAGTGTGTGAAGTCATCAAGAAAGAGCTCGGAGATACTCCCGATAAAATATTTTCTGAATTTGATCCTGTTCCAATAGCAAGTGCTTCCCTTGCACAAGTCCATATTGCTCGCGATCACAATGGTGAAAAAGTGGCTGTGAAGGTTCAGCACACTCACATGACAGATACTGCAGCTGCGGACTGTGCTACTGTGAACTTTATTGTGAACACCCTGTACGAGATTTTTCCTTCTTTTGATTACAGGTGGTTGATTGAGGAGATGCGGGAAAGTTTACCCAAGGAACTGGATTTTATAAACGAGGCCAAGAACAGTGAGAAATGCTTGGAAAACTTTCAGAAGTTCTCTCCTCATATTGCAGCTTATGTATATGCGCCAAAGGTGCATTGGAGTTTAAGTACCTCAAAGTTGTTGACCATGGAATATATAGATGGCGCACAAGTAAATGATGTGAAGACCGTCAAAAGACTCGGAATGCGCCCTGATGAAGTTGCAAGACTAGTTAGTGAATCTTTTGCAGAAATGATGTTCAAACACGGGTTTGTACATTGTGACCCCCATGCTGCCAACTTGTTAGTTCGTCCTCGGCCTGGTAGTGGAAAGAGCTTTCTAGGAAAGAAAGAACCACAATTGATACTTCTAGACCATGGTCTGTATAAAGTTCTTGACTCCGAGACCAGAACTAACTATGCTGCACTATGGAAGGCGTTGATTTTTTCTGATGCCAATGCAATAAAAGAATATAGTGCAAAATTAGGTGCTGGAGAGGACTTGTATGCATTATTTGCAGGGATTCTTACCATGAGGCCTTGGAATAGGGTCATTGACCCAGCCATTGATCATTTGATTGTACAAGGCACTGAAGCCGACCGTTCAGAACTGCAGATGTATGCTTCTCAGTATTTTTCTCAAATCTCAGAGCTTTTGAGGAGGTTGCCGCGTGAGATTCTTTTAATGCTGAAGACAAATGATTGTTTGCGATCAGTTAGCAATGCTCTGTTGCAGGTACCTTCTCTTGAGACATTCATGATCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1

Protein Analysis

485

Amino Acids

54.27

Weight (kDa)

6.3

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 129 - 387 5.1e-82 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 713
Acc36I ACCTGC 1 cut(s) 1411
Acc65I GGTACC 2 cut(s) 349, 1423
AccB1I GGYRCC 3 cut(s) 155, 349, 1423
AccII CGCG 6 cut(s) 10, 38, 71, 153, 531, 1357
AclWI GGATC 2 cut(s) 6, 476
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 476
AcuI CTGAAG 3 cut(s) 234, 1299, 1397
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 6 cut(s) 351, 635, 817, 963, 1269, 1425
AfiI CCNNNNNNNGG 2 cut(s) 1007, 1013
AgsI TTSAA 4 cut(s) 278, 292, 391, 949
AhlI ACTAGT 1 cut(s) 916
AjnI CCWGG 1 cut(s) 1006
AleI CACNNNNGTG 1 cut(s) 540
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 2 cut(s) 1085, 1430
AlwI GGATC 2 cut(s) 6, 476
AlwNI CAGNNNCTG 2 cut(s) 170, 587
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 4 cut(s) 3, 720, 1004, 1223
ApeKI GCWGC 7 cut(s) 170, 334, 590, 593, 776, 980, 1109
ApoI RAATTY 1 cut(s) 476
Asp700I GAANNNNTTC 1 cut(s) 750
Asp718I GGTACC 2 cut(s) 349, 1423
AspLEI GCGC 7 cut(s) 40, 71, 158, 268, 793, 854, 897
AsuHPI GGTGA 2 cut(s) 245, 554
AvaI CYCGRG 1 cut(s) 329
AxyI CCTNAGG 2 cut(s) 257, 354
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 3 cut(s) 155, 349, 1423
BanII GRGCYC 1 cut(s) 447
BbsI GAAGAC 2 cut(s) 878, 1385
Bbv12I GWGCWC 1 cut(s) 447
BbvI GCAGC 7 cut(s) 157, 346, 580, 602, 788, 967, 1096
BccI CCATC 2 cut(s) 182, 842
BciT130I CCWGG 1 cut(s) 1008
BclI TGATCA 2 cut(s) 1255, 1446
BcoDI GTCTC 2 cut(s) 1085, 1430
BcuI ACTAGT 1 cut(s) 916
BfaI CTAG 3 cut(s) 917, 1028, 1058
BfmI CTRYAG 2 cut(s) 588, 1298
BfoI RGCGCY 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 1411
BlpI GCTNAGC 1 cut(s) 240
Bme1390I CCNGG 1 cut(s) 1008
BmeT110I CYCGRG 1 cut(s) 329
BmiI GGNNCC 3 cut(s) 157, 351, 1425
BmrFI CCNGG 1 cut(s) 1008
BmsI GCATC 3 cut(s) 334, 669, 1129
BoxI GACNNNNGTC 1 cut(s) 1065
BpiI GAAGAC 2 cut(s) 878, 1385
BpmI CTGGAG 1 cut(s) 1200
Bpu1102I GCTNAGC 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 1454
BsaHI GRCGYC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 1085
BsaJI CCNNGG 5 cut(s) 696, 834, 1001, 1063, 1226
BsaWI WCCGGW 1 cut(s) 400
BsaXI ACNNNNNCTCC 4 cut(s) 371, 401, 799, 829
Bsc4I CCNNNNNNNGG 2 cut(s) 1007, 1013
Bse1I ACTGG 1 cut(s) 708
Bse21I CCTNAGG 2 cut(s) 257, 354
Bse3DI GCAATG 2 cut(s) 229, 1414
BseBI CCWGG 1 cut(s) 1008
BseDI CCNNGG 5 cut(s) 696, 834, 1001, 1063, 1226
BseLI CCNNNNNNNGG 2 cut(s) 1007, 1013
BseMI GCAATG 2 cut(s) 229, 1414
BseMII CTCAG 4 cut(s) 271, 368, 1328, 1347
BseNI ACTGG 1 cut(s) 708
BseRI GAGGAG 3 cut(s) 689, 756, 1360
BseXI GCAGC 7 cut(s) 157, 346, 580, 602, 788, 967, 1096
BseYI CCCAGC 1 cut(s) 1246
BsgI GTGCAG 1 cut(s) 1095
Bsh1236I CGCG 6 cut(s) 10, 38, 71, 153, 531, 1357
Bsh1285I CGRYCG 1 cut(s) 1288
BshFI GGCC 4 cut(s) 5, 722, 1006, 1225
BshNI GGYRCC 3 cut(s) 155, 349, 1423
BsiEI CGRYCG 1 cut(s) 1288
BsiHKAI GWGCWC 1 cut(s) 447
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 1 cut(s) 401
BslI CCNNNNNNNGG 2 cut(s) 1007, 1013
BsmAI GTCTC 2 cut(s) 1085, 1430
BsmI GAATGC 1 cut(s) 897
BsnI GGCC 4 cut(s) 5, 722, 1006, 1225
Bso31I GGTCTC 1 cut(s) 1085
BsoBI CYCGRG 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 447
Bsp1407I TGTACA 2 cut(s) 961, 1267
Bsp143I GATC 6 cut(s) 11, 481, 532, 1255, 1397, 1446
Bsp1720I GCTNAGC 1 cut(s) 240
Bsp19I CCATGG 2 cut(s) 834, 1063
Bsp68I TCGCGA 1 cut(s) 531
BspANI GGCC 4 cut(s) 5, 722, 1006, 1225
BspCNI CTCAG 4 cut(s) 270, 367, 1327, 1346
BspFNI CGCG 6 cut(s) 10, 38, 71, 153, 531, 1357
BspHI TCATGA 1 cut(s) 1443
BspLI GGNNCC 3 cut(s) 157, 351, 1425
BspMAI CTGCAG 2 cut(s) 592, 1302
BspMI ACCTGC 1 cut(s) 1411
BspPI GGATC 2 cut(s) 6, 476
BspT107I GGYRCC 3 cut(s) 155, 349, 1423
BspTNI GGTCTC 1 cut(s) 1085
BsrDI GCAATG 2 cut(s) 229, 1414
BsrGI TGTACA 2 cut(s) 961, 1267
BsrI ACTGG 1 cut(s) 708
BssECI CCNNGG 5 cut(s) 696, 834, 1001, 1063, 1226
BssMI GATC 6 cut(s) 11, 481, 532, 1255, 1397, 1446
BssNI GRCGYC 1 cut(s) 156
BssT1I CCWWGG 4 cut(s) 696, 834, 1063, 1226
Bst2UI CCWGG 1 cut(s) 1008
Bst4CI ACNGT 7 cut(s) 133, 201, 602, 610, 731, 877, 1289
BstACI GRCGYC 1 cut(s) 156
BstAPI GCANNNNNTGC 1 cut(s) 1202
BstAUI TGTACA 2 cut(s) 961, 1267
BstC8I GCNNGC 2 cut(s) 36, 529
BstDEI CTNAG 5 cut(s) 240, 257, 354, 1314, 1333
BstDSI CCRYGG 2 cut(s) 834, 1063
BstFNI CGCG 6 cut(s) 10, 38, 71, 153, 531, 1357
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 7 cut(s) 40, 71, 158, 268, 793, 854, 897
BstKTI GATC 6 cut(s) 14, 484, 535, 1258, 1400, 1449
BstMAI GTCTC 2 cut(s) 1085, 1430
BstMBI GATC 6 cut(s) 11, 481, 532, 1255, 1397, 1446
BstMCI CGRYCG 1 cut(s) 1288
BstNI CCWGG 1 cut(s) 1008
BstPAI GACNNNNGTC 1 cut(s) 1065
BstSCI CCNGG 1 cut(s) 1006
BstSFI CTRYAG 2 cut(s) 588, 1298
BstUI CGCG 6 cut(s) 10, 38, 71, 153, 531, 1357
BstV1I GCAGC 7 cut(s) 157, 346, 580, 602, 788, 967, 1096
BstV2I GAAGAC 2 cut(s) 878, 1385
BstXI CCANNNNNNTGG 1 cut(s) 703
Bsu36I CCTNAGG 2 cut(s) 257, 354
BsuRI GGCC 4 cut(s) 5, 722, 1006, 1225
BtgI CCRYGG 2 cut(s) 834, 1063
BtgZI GCGATG 1 cut(s) 160
BtsIMutI CAGTG 4 cut(s) 129, 197, 736, 1275
BtuMI TCGCGA 1 cut(s) 531
BveI ACCTGC 1 cut(s) 1411
Cac8I GCNNGC 2 cut(s) 36, 529
CaiI CAGNNNCTG 2 cut(s) 170, 587
CciI TCATGA 1 cut(s) 1443
CfoI GCGC 7 cut(s) 40, 71, 158, 268, 793, 854, 897
Csp6I GTAC 6 cut(s) 350, 634, 816, 962, 1268, 1424
CviQI GTAC 6 cut(s) 350, 634, 816, 962, 1268, 1424
DdeI CTNAG 5 cut(s) 240, 257, 354, 1314, 1333
DinI GGCGCC 1 cut(s) 157
DpnI GATC 6 cut(s) 13, 483, 534, 1257, 1399, 1448
DpnII GATC 6 cut(s) 11, 481, 532, 1255, 1397, 1446
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 445
Eco130I CCWWGG 4 cut(s) 696, 834, 1063, 1226
Eco147I AGGCCT 1 cut(s) 1225
Eco24I GRGCYC 1 cut(s) 447
Eco31I GGTCTC 1 cut(s) 1085
Eco53kI GAGCTC 1 cut(s) 445
Eco57I CTGAAG 3 cut(s) 234, 1299, 1397
Eco81I CCTNAGG 2 cut(s) 257, 354
Eco88I CYCGRG 1 cut(s) 329
EcoICRI GAGCTC 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 1006
EcoT14I CCWWGG 4 cut(s) 696, 834, 1063, 1226
EcoT22I ATGCAT 1 cut(s) 1198
EcoT38I GRGCYC 1 cut(s) 447
EgeI GGCGCC 1 cut(s) 157
EheI GGCGCC 1 cut(s) 157
ErhI CCWWGG 4 cut(s) 696, 834, 1063, 1226
FauI CCCGC 2 cut(s) 112, 675
FbaI TGATCA 2 cut(s) 1255, 1446
FriOI GRGCYC 1 cut(s) 447
FspBI CTAG 3 cut(s) 917, 1028, 1058
GlaI GCGC 7 cut(s) 39, 70, 157, 267, 792, 853, 896
GsaI CCCAGC 1 cut(s) 1250
GsuI CTGGAG 1 cut(s) 1200
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 4 cut(s) 5, 722, 1006, 1225
HapII CCGG 1 cut(s) 401
HhaI GCGC 7 cut(s) 40, 71, 158, 268, 793, 854, 897
Hin1I GRCGYC 1 cut(s) 156
Hin6I GCGC 7 cut(s) 38, 69, 156, 266, 791, 852, 895
HinP1I GCGC 7 cut(s) 38, 69, 156, 266, 791, 852, 895
HincII GTYRAC 1 cut(s) 831
HindII GTYRAC 1 cut(s) 831
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 6 cut(s) 380, 885, 926, 1085, 1210, 1363
HpaII CCGG 1 cut(s) 401
HphI GGTGA 2 cut(s) 245, 554
Hpy166II GTNNAC 5 cut(s) 253, 613, 625, 692, 831
Hpy188I TCNGA 9 cut(s) 97, 449, 475, 756, 890, 1090, 1138, 1294, 1336
Hpy8I GTNNAC 5 cut(s) 253, 613, 625, 692, 831
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 6 cut(s) 190, 209, 553, 657, 1114, 1437
HpyCH4III ACNGT 7 cut(s) 133, 201, 602, 610, 731, 877, 1289
HpyF3I CTNAG 5 cut(s) 240, 257, 354, 1314, 1333
Hsp92I GRCGYC 1 cut(s) 156
HspAI GCGC 7 cut(s) 38, 69, 156, 266, 791, 852, 895
KasI GGCGCC 1 cut(s) 155
KpnI GGTACC 2 cut(s) 353, 1427
Ksp22I TGATCA 2 cut(s) 1255, 1446
Kzo9I GATC 6 cut(s) 11, 481, 532, 1255, 1397, 1446
Lsp1109I GCAGC 7 cut(s) 157, 346, 580, 602, 788, 967, 1096
LweI GCATC 3 cut(s) 334, 669, 1129
MaeI CTAG 3 cut(s) 917, 1028, 1058
MaeIII GTNAC 1 cut(s) 968
MalI GATC 6 cut(s) 13, 483, 534, 1257, 1399, 1448
MboI GATC 6 cut(s) 11, 481, 532, 1255, 1397, 1446
MboII GAAGA 3 cut(s) 399, 883, 1390
MfeI CAATTG 1 cut(s) 1046
MhlI GDGCHC 1 cut(s) 447
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 281, 476, 1046, 1169
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 156
MlyI GAGTC 3 cut(s) 389, 879, 1079
MmeI TCCRAC 1 cut(s) 120
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 1198
MroXI GAANNNNTTC 1 cut(s) 750
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 270, 812, 1370
MslI CAYNNNNRTG 2 cut(s) 540, 575
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 3 cut(s) 170, 337, 593
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 1008
MunI CAATTG 1 cut(s) 1046
Mva1269I GAATGC 1 cut(s) 897
MvaI CCWGG 1 cut(s) 1008
MvnI CGCG 6 cut(s) 10, 38, 71, 153, 531, 1357
NarI GGCGCC 1 cut(s) 156
NcoI CCATGG 2 cut(s) 834, 1063
NdeII GATC 6 cut(s) 11, 481, 532, 1255, 1397, 1446
NlaIV GGNNCC 3 cut(s) 157, 351, 1425
NmeAIII GCCGAG 1 cut(s) 982
NmuCI GTSAC 1 cut(s) 968
NruI TCGCGA 1 cut(s) 531
NsiI ATGCAT 1 cut(s) 1198
OliI CACNNNNGTG 1 cut(s) 540
PagI TCATGA 1 cut(s) 1443
PceI AGGCCT 1 cut(s) 1225
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 897
PdmI GAANNNNTTC 1 cut(s) 750
PfeI GAWTC 3 cut(s) 926, 1210, 1363
PleI GAGTC 3 cut(s) 388, 879, 1079
PluTI GGCGCC 1 cut(s) 159
PpsI GAGTC 3 cut(s) 388, 879, 1079
PshAI GACNNNNGTC 1 cut(s) 1065
PsiI TTATAA 1 cut(s) 713
Psp124BI GAGCTC 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 1006
PspFI CCCAGC 1 cut(s) 1246
PspGI CCWGG 1 cut(s) 1006
PspN4I GGNNCC 3 cut(s) 157, 351, 1425
PsrI GAACNNNNNNTAC 2 cut(s) 617, 649
PstI CTGCAG 2 cut(s) 592, 1302
PstNI CAGNNNCTG 2 cut(s) 170, 587
PvuII CAGCTG 2 cut(s) 337, 593
RruI TCGCGA 1 cut(s) 531
RsaI GTAC 6 cut(s) 351, 635, 817, 963, 1269, 1425
RsaNI GTAC 6 cut(s) 350, 634, 816, 962, 1268, 1424
RseI CAYNNNNRTG 2 cut(s) 540, 575
SacI GAGCTC 1 cut(s) 447
SaqAI TTAA 3 cut(s) 270, 812, 1370
Sau3AI GATC 6 cut(s) 11, 481, 532, 1255, 1397, 1446
SchI GAGTC 3 cut(s) 389, 879, 1079
ScrFI CCNGG 1 cut(s) 1008
SduI GDGCHC 1 cut(s) 447
SfaNI GCATC 3 cut(s) 334, 669, 1129
SfcI CTRYAG 2 cut(s) 588, 1298
SfoI GGCGCC 1 cut(s) 157
SmiMI CAYNNNNRTG 2 cut(s) 540, 575
SmlI CTYRAG 1 cut(s) 1433
SmoI CTYRAG 1 cut(s) 1433
SpeI ACTAGT 1 cut(s) 916
Sse9I AATT 4 cut(s) 281, 476, 1046, 1169
SseBI AGGCCT 1 cut(s) 1225
SspDI GGCGCC 1 cut(s) 155
SspI AATATT 1 cut(s) 468
SspMI CTAG 3 cut(s) 917, 1028, 1058
SstI GAGCTC 1 cut(s) 447
StuI AGGCCT 1 cut(s) 1225
StyD4I CCNGG 1 cut(s) 1006
StyI CCWWGG 4 cut(s) 696, 834, 1063, 1226
TaaI ACNGT 7 cut(s) 133, 201, 602, 610, 731, 877, 1289
TaqI TCGA 1 cut(s) 183
TasI AATT 4 cut(s) 281, 476, 1046, 1169
TatI WGTACW 2 cut(s) 961, 1267
TauI GCSGC 8 cut(s) 66, 69, 74, 77, 80, 156, 170, 1357
TfiI GAWTC 3 cut(s) 926, 1210, 1363
Tru1I TTAA 3 cut(s) 270, 812, 1370
Tru9I TTAA 3 cut(s) 270, 812, 1370
TscAI CASTG 4 cut(s) 136, 204, 736, 1282
TseFI GTSAC 1 cut(s) 968
TseI GCWGC 7 cut(s) 170, 334, 590, 593, 776, 980, 1109
Tsp45I GTSAC 1 cut(s) 968
TspDTI ATGAA 4 cut(s) 261, 429, 918, 1432
TspRI CASTG 4 cut(s) 136, 204, 736, 1282
XapI RAATTY 1 cut(s) 476
XbaI TCTAGA 1 cut(s) 1057
XcmI CCANNNNNNNNNTGG 1 cut(s) 801
XmnI GAANNNNTTC 1 cut(s) 750
XspI CTAG 3 cut(s) 917, 1028, 1058
Zsp2I ATGCAT 1 cut(s) 1198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.