Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007863

Physical Location & Seq

Genomic Coordinates Reverse (-)

16564491 .. 16566545

Gene Structure 2055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGATGCCTTTGTATCTGACTTCATATGTTATATGCTGCATTTTACAGTTGGAAATAGGACGTAGAAGTGCAGGAGATAGTGTTCTTGAAAGGGAGGGTTATGCTGTTTCTGCAGGATTTTCATTGGGTCTTGTTGCATTGGGTCGGGGAGAAGATGCTCTTGGTTTCATGGACACAATGGTTGATAAATTGTTCCATTACATTGGTGGAAAAGAAGTTAACAATTTAATTGTTCACCTACATCAGGATAGATCCCTTTCAGCAATATTATCAGCCGATGAACACAGCCGTGCTGCTGCACAGGTTGAGTGTTTCACACTAATGATGGATGGAACTGCGGTCAATGTTGATGCCACTGCACCTGGAGCCACACTCGCCCTTGCTTTAATGTTTTTGAAGACTGAATCACAGGCAATTGTGTCTAAGCTCTCTATTCCTCAAACACAGTTTGAGTTACAATATGTGCGGCCCGATTTCATCATGCTTCGTGTCATTGCCCGAAATTTGATAATGTGGAGCAGCTATGCTGTTTACTTTCCGAATGAGATCAAGCCAGTTTCTGCTACAAGTGGAAACTTCCTAAAAGGATTGTCCCACTATGTCCATCGTAGCACATTGGAGATATGCCTTCATCTCATTGTTCTTTCCCTGTCTCTGGTTATGGCTGGTTCTGGACATTTACGCAACAGAAATTCTGCAGATGGACAAGTTAATTATGGTGTTCAGATGGCTGTAAGCCTAGCAATTGGCTTTTTGTTCCTTGGGGGAGGAACAAGGCCATTTTCAACAAGCAACAGTTCAGTTGCTGCTTTGCCGATTACTCTTTATCCACGATTGCCTACTGGACCAAGTGATAATCGATGCCACCTCCAGGAAGTGTATTTTCGGGCGTTTTGGCACTTGTATGTACTTGCAACTGAAGCCCGTTGGATCCAGACAGTTGATGTTGACACCGGTCTATCTGTGTATGCCCCTCTTGAAGTTACTATTAGGGAAACTGAACATTATGCAGAGACAAGTTTTTGTGAGGTTACGCCTTGCCTTCTGCCAGAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009553 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0010154 GO:0010252 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0042592 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC1 PC_rep

Protein Analysis

353

Amino Acids

38.72

Weight (kDa)

5.75

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APC1_3rd	PF21282	309 - 352	1.6e-08	APC1 beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05560 AT5G05560 AT5G05560
fragaria_vesca	FvH4_7g24630 FvH4_7g24630 FvH4_7g24630 FvH4_7g24630 FvH4_7g24630 FvH4_7g24630
malus_domestica	MD07G1223400.v1.1
prunus_persica	Prupe.2G252000_v2.0.a1 Prupe.2G252000_v2.0.a1
pyrus_communis	pycom01g17190 pycom07g20210
rosa_chinensis	RchiOBHm_Chr1g0370461
rosa_laevigata	RLG00000027039
rosa_multiflora	Rmu_sc0005656.1_g000015
rosa_roxburghii	Rroxscaffold_4G00286540
rosa_rugosa	Rorug01G0356900
rosa_samantha	Rh1AG365400 Rh1BG328400 Rh1CG341500 Rh1DG358700
rosa_wichuraiana	Rw1G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1057
AciI	CCGC	2 cut(s)	338, 466
AclWI	GGATC	3 cut(s)	246, 925, 938
AcsI	RAATTY	2 cut(s)	502, 691
AcuI	CTGAAG	1 cut(s)	939
AfaI	GTAC	1 cut(s)	909
AfiI	CCNNNNNNNGG	3 cut(s)	244, 655, 871
AgeI	ACCGGT	1 cut(s)	953
AgsI	TTSAA	4 cut(s)	89, 397, 786, 980
AjnI	CCWGG	2 cut(s)	361, 870
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AleI	CACNNNNGTG	1 cut(s)	288
AloI	GAACNNNNNNTCC	2 cut(s)	66, 98
AluBI	AGCT	2 cut(s)	427, 522
AluI	AGCT	2 cut(s)	427, 522
Alw26I	GTCTC	2 cut(s)	657, 1007
AlwI	GGATC	3 cut(s)	246, 925, 938
AlwNI	CAGNNNCTG	2 cut(s)	560, 806
AoxI	GGCC	2 cut(s)	467, 776
ApeKI	GCWGC	5 cut(s)	36, 293, 296, 519, 806
ApoI	RAATTY	2 cut(s)	502, 691
AsiGI	ACCGGT	1 cut(s)	953
AspS9I	GGNCC	2 cut(s)	468, 845
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	845
BamHI	GGATCC	1 cut(s)	930
BbsI	GAAGAC	1 cut(s)	404
BbvI	GCAGC	5 cut(s)	23, 280, 283, 531, 793
BccI	CCATC	5 cut(s)	319, 323, 612, 695, 721
BceAI	ACGGC	1 cut(s)	273
BciT130I	CCWGG	2 cut(s)	363, 872
BcoDI	GTCTC	2 cut(s)	657, 1007
BfaI	CTAG	1 cut(s)	740
BfmI	CTRYAG	2 cut(s)	111, 696
BisI	GCNGC	6 cut(s)	37, 294, 297, 467, 520, 807
BlsI	GCNGC	6 cut(s)	38, 295, 298, 468, 521, 808
Bme1390I	CCNGG	2 cut(s)	363, 872
Bme18I	GGWCC	1 cut(s)	845
BmgT120I	GGNCC	2 cut(s)	468, 845
BmiI	GGNNCC	2 cut(s)	367, 932
BmrFI	CCNGG	2 cut(s)	363, 872
BmsI	GCATC	3 cut(s)	145, 340, 851
BoxI	GACNNNNGTC	1 cut(s)	954
BpiI	GAAGAC	1 cut(s)	404
BplI	GAGNNNNNCTC	2 cut(s)	357, 389
BpmI	CTGGAG	2 cut(s)	384, 854
Bsa29I	ATCGAT	1 cut(s)	859
BsaJI	CCNNGG	1 cut(s)	760
BsaWI	WCCGGW	1 cut(s)	953
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	3 cut(s)	244, 655, 871
Bse118I	RCCGGY	1 cut(s)	953
Bse1I	ACTGG	2 cut(s)	554, 847
Bse3DI	GCAATG	1 cut(s)	492
BseBI	CCWGG	2 cut(s)	363, 872
BseCI	ATCGAT	1 cut(s)	859
BseDI	CCNNGG	1 cut(s)	760
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	3 cut(s)	244, 655, 871
BseMI	GCAATG	1 cut(s)	492
BseNI	ACTGG	2 cut(s)	554, 847
BseXI	GCAGC	5 cut(s)	23, 280, 283, 531, 793
BsgI	GTGCAG	3 cut(s)	90, 282, 342
BshFI	GGCC	2 cut(s)	469, 778
BshTI	ACCGGT	1 cut(s)	953
BshVI	ATCGAT	1 cut(s)	859
BsiSI	CCGG	1 cut(s)	954
BslFI	GGGAC	1 cut(s)	577
BslI	CCNNNNNNNGG	3 cut(s)	244, 655, 871
BsmAI	GTCTC	2 cut(s)	657, 1007
BsmFI	GGGAC	1 cut(s)	577
BsnI	GGCC	2 cut(s)	469, 778
Bsp143I	GATC	3 cut(s)	251, 546, 930
BspACI	CCGC	2 cut(s)	338, 466
BspANI	GGCC	2 cut(s)	469, 778
BspDI	ATCGAT	1 cut(s)	859
BspLI	GGNNCC	2 cut(s)	367, 932
BspMAI	CTGCAG	2 cut(s)	115, 700
BspPI	GGATC	3 cut(s)	246, 925, 938
BsrDI	GCAATG	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	953
BsrI	ACTGG	2 cut(s)	554, 847
BssAI	RCCGGY	1 cut(s)	953
BssECI	CCNNGG	1 cut(s)	760
BssMI	GATC	3 cut(s)	251, 546, 930
BssT1I	CCWWGG	1 cut(s)	760
Bst2UI	CCWGG	2 cut(s)	363, 872
Bst4CI	ACNGT	4 cut(s)	48, 447, 797, 940
BstDEI	CTNAG	1 cut(s)	423
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	334
BstKTI	GATC	3 cut(s)	254, 549, 933
BstMAI	GTCTC	2 cut(s)	657, 1007
BstMBI	GATC	3 cut(s)	251, 546, 930
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 365, 374, 920
BstNI	CCWGG	2 cut(s)	363, 872
BstPAI	GACNNNNGTC	1 cut(s)	954
BstSCI	CCNGG	2 cut(s)	361, 870
BstSFI	CTRYAG	2 cut(s)	111, 696
BstV1I	GCAGC	5 cut(s)	23, 280, 283, 531, 793
BstV2I	GAAGAC	1 cut(s)	404
BstX2I	RGATCY	2 cut(s)	251, 930
BstXI	CCANNNNNNTGG	1 cut(s)	203
BstYI	RGATCY	2 cut(s)	251, 930
Bsu15I	ATCGAT	1 cut(s)	859
BsuRI	GGCC	2 cut(s)	469, 778
BsuTUI	ATCGAT	1 cut(s)	859
BtsCI	GGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	354
CaiI	CAGNNNCTG	2 cut(s)	560, 806
Cfr10I	RCCGGY	1 cut(s)	953
Cfr13I	GGNCC	2 cut(s)	468, 845
ClaI	ATCGAT	1 cut(s)	859
Csp6I	GTAC	1 cut(s)	908
CspAI	ACCGGT	1 cut(s)	953
CviAII	CATG	2 cut(s)	169, 481
CviQI	GTAC	1 cut(s)	908
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	3 cut(s)	253, 548, 932
DpnII	GATC	3 cut(s)	251, 546, 930
Eco130I	CCWWGG	1 cut(s)	760
Eco47I	GGWCC	1 cut(s)	845
Eco57I	CTGAAG	1 cut(s)	939
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	361, 870
EcoT14I	CCWWGG	1 cut(s)	760
ErhI	CCWWGG	1 cut(s)	760
FaeI	CATG	2 cut(s)	172, 484
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FaqI	GGGAC	1 cut(s)	577
FatI	CATG	2 cut(s)	168, 480
FauNDI	CATATG	1 cut(s)	25
Fnu4HI	GCNGC	6 cut(s)	37, 294, 297, 467, 520, 807
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	6 cut(s)	37, 294, 297, 467, 520, 807
FspBI	CTAG	1 cut(s)	740
GluI	GCNGC	6 cut(s)	37, 294, 297, 467, 520, 807
GsuI	CTGGAG	2 cut(s)	384, 854
HaeIII	GGCC	2 cut(s)	469, 778
HapII	CCGG	1 cut(s)	954
Hin1II	CATG	2 cut(s)	172, 484
HincII	GTYRAC	2 cut(s)	220, 949
HindII	GTYRAC	2 cut(s)	220, 949
HinfI	GANTC	1 cut(s)	404
HpaI	GTTAAC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	954
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	4 cut(s)	220, 235, 532, 949
Hpy188I	TCNGA	3 cut(s)	18, 540, 726
Hpy188III	TCNNGA	5 cut(s)	86, 245, 672, 934, 977
Hpy8I	GTNNAC	4 cut(s)	220, 235, 532, 949
HpyAV	CCTTC	2 cut(s)	638, 1052
HpyCH4III	ACNGT	4 cut(s)	48, 447, 797, 940
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	9 cut(s)	39, 71, 113, 137, 299, 359, 698, 914, 1010
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 365, 374, 920
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	2 cut(s)	172, 484
KspAI	GTTAAC	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	251, 546, 930
LmnI	GCTCC	2 cut(s)	365, 516
Lsp1109I	GCAGC	5 cut(s)	23, 280, 283, 531, 793
LweI	GCATC	3 cut(s)	145, 340, 851
MaeI	CTAG	1 cut(s)	740
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	3 cut(s)	453, 982, 1030
MalI	GATC	3 cut(s)	253, 548, 932
MboI	GATC	3 cut(s)	251, 546, 930
MboII	GAAGA	2 cut(s)	164, 409
MfeI	CAATTG	2 cut(s)	414, 744
MflI	RGATCY	2 cut(s)	251, 930
MluCI	AATT	9 cut(s)	188, 223, 228, 414, 502, 691, 712, 744, 1052
MmeI	TCCRAC	2 cut(s)	30, 908
MnlI	CCTC	6 cut(s)	88, 447, 761, 878, 984, 1021
MseI	TTAA	4 cut(s)	219, 227, 386, 711
MslI	CAYNNNNRTG	3 cut(s)	288, 320, 903
MspI	CCGG	1 cut(s)	954
MspR9I	CCNGG	2 cut(s)	363, 872
MunI	CAATTG	2 cut(s)	414, 744
MvaI	CCWGG	2 cut(s)	363, 872
MwoI	GCNNNNNNNGC	4 cut(s)	110, 365, 374, 920
NdeI	CATATG	1 cut(s)	25
NdeII	GATC	3 cut(s)	251, 546, 930
NlaIII	CATG	2 cut(s)	172, 484
NlaIV	GGNNCC	2 cut(s)	367, 932
OliI	CACNNNNGTG	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	404
PfoI	TCCNGGA	1 cut(s)	870
PinAI	ACCGGT	1 cut(s)	953
PkrI	GCNGC	6 cut(s)	38, 295, 298, 468, 521, 808
PshAI	GACNNNNGTC	1 cut(s)	954
PsiI	TTATAA	1 cut(s)	1057
Psp6I	CCWGG	2 cut(s)	361, 870
PspGI	CCWGG	2 cut(s)	361, 870
PspN4I	GGNNCC	2 cut(s)	367, 932
PspPI	GGNCC	2 cut(s)	468, 845
PstI	CTGCAG	2 cut(s)	115, 700
PstNI	CAGNNNCTG	2 cut(s)	560, 806
PsuI	RGATCY	2 cut(s)	251, 930
RsaI	GTAC	1 cut(s)	909
RsaNI	GTAC	1 cut(s)	908
RseI	CAYNNNNRTG	3 cut(s)	288, 320, 903
SaqAI	TTAA	4 cut(s)	219, 227, 386, 711
SatI	GCNGC	6 cut(s)	37, 294, 297, 467, 520, 807
Sau3AI	GATC	3 cut(s)	251, 546, 930
Sau96I	GGNCC	2 cut(s)	468, 845
ScrFI	CCNGG	2 cut(s)	363, 872
SetI	ASST	8 cut(s)	64, 240, 306, 364, 429, 524, 870, 1032
SfaNI	GCATC	3 cut(s)	145, 340, 851
SfcI	CTRYAG	2 cut(s)	111, 696
SinI	GGWCC	1 cut(s)	845
SmiMI	CAYNNNNRTG	3 cut(s)	288, 320, 903
Sse9I	AATT	9 cut(s)	188, 223, 228, 414, 502, 691, 712, 744, 1052
SsiI	CCGC	2 cut(s)	338, 466
SspI	AATATT	1 cut(s)	267
SspMI	CTAG	1 cut(s)	740
StyD4I	CCNGG	2 cut(s)	361, 870
StyI	CCWWGG	1 cut(s)	760
TaaI	ACNGT	4 cut(s)	48, 447, 797, 940
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	859
TasI	AATT	9 cut(s)	188, 223, 228, 414, 502, 691, 712, 744, 1052
TatI	WGTACW	1 cut(s)	907
TauI	GCSGC	1 cut(s)	469
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	4 cut(s)	219, 227, 386, 711
Tru9I	TTAA	4 cut(s)	219, 227, 386, 711
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	5 cut(s)	36, 293, 296, 519, 806
TspDTI	ATGAA	6 cut(s)	12, 111, 157, 294, 466, 620
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	845
XagI	CCTNNNNNAGG	1 cut(s)	242
XapI	RAATTY	2 cut(s)	502, 691
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XspI	CTAG	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.