Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0016807

Physical Location & Seq

Genomic Coordinates Forward (+)

18456235 .. 18458142

Gene Structure 1908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCCTTCTATAGAAGTATCCGATTATCTACTTGCGGGAACTACTCCGAAGGAGAAGAAGATGAAGAAATTGAAAAGCGAAACCCTAGACGCCGCGGCCGACTCGCCAGCTACTGAGAAGAAGTCGAAGAAGGAGTCTAAGCACAAAAAGCGGAAGGCTTCGGATGACGAGGACAGGAGCGAGACGAGCTCCGAGATGGGCGAGCCCGTGAATGTGAAGCCTCCGAAGAGCGAGGAGAAGAGCAAGAAGAAGTCAAAGAAGGCGAAGGTGGAGCCGGAGGAGGAGGACGAGGAGAAGACCGAGGAGATGGTTAAAGAGGATCCTAACGCGGTGTCCAAGTTTCGGATTTCGGCGCCCTTGAGGGCCAAATTGAAGGAGAATGGGATCGAATCCTTGTTCCCTATTCAGGCCATGACATTCGATACCATTTTGGATGGTTTGGATTTGGTCGGCCGGGCTCGAACAGGGCAGGGTAAAACTCTGGCTTTTGTGTTGCCTGTTTTGGAGTCTTTGACAAATGGGCCTGCAAGAGAATTTAGAAAGACTGGTTATGGTAGACCTCCAACTGTTATCGTGCTTTTACCCACCAGGGAACTTGCCAAACAGGTTTTCGCTGATTTTGAAGCTTATGGTGGTGCTGTGGGGCTAGCAGCGTGTTGTGTATATGGTGGATCTCCCTACGGTGCTCAAGAAAGTAAGCTAAGGAGAGGGGTGGATGTTGTTATTGGAACGCCTGGCCGCATAAAGGTTAGGATCCTTGATGAAGCTGATGAAATGCTGAGGATGGGCTTTGTTGATGATGTTGAACTCATTCTAGGCAAGGTGAAGGATGTAAGTAAAGTTCAAACGCTTCTCTTCAGTGCAACCTTGCCGAGTTGGGTGAAAGATTTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C

Protein Analysis

299

Amino Acids

32.81

Weight (kDa)

8.57

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	134 - 297	1.7e-37	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016807)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36510 FvH4_3g36510
pyrus_communis	pycom01g19970
rosa_chinensis	RchiOBHm_Chr5g0065371 RchiOBHm_Chr5g0065431
rosa_laevigata	RLG00000035787
rosa_multiflora	Rmu_co8502081.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015820
rosa_rugosa	Rorug05G0371800
rosa_samantha	Rh5AG429500 Rh5BG444800 Rh5CG467100 Rh5DG457300
rosa_wichuraiana	Rw5G040320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	352
AccI	GTMKAC	1 cut(s)	556
AccII	CGCG	2 cut(s)	95, 329
AciI	CCGC	6 cut(s)	35, 93, 95, 151, 329, 739
AclWI	GGATC	6 cut(s)	314, 327, 392, 679, 748, 761
AcoI	YGGCCR	3 cut(s)	96, 451, 736
AcsI	RAATTY	1 cut(s)	533
AcuI	CTGAAG	1 cut(s)	841
AcyI	GRCGYC	2 cut(s)	90, 353
AfiI	CCNNNNNNNGG	3 cut(s)	342, 406, 745
AgsI	TTSAA	5 cut(s)	73, 373, 623, 806, 845
AjnI	CCWGG	2 cut(s)	587, 733
AjuI	GAANNNNNNNTTGG	2 cut(s)	593, 625
AluBI	AGCT	5 cut(s)	110, 189, 626, 700, 767
AluI	AGCT	5 cut(s)	110, 189, 626, 700, 767
Alw21I	GWGCWC	2 cut(s)	191, 688
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	6 cut(s)	314, 327, 392, 679, 748, 761
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	6 cut(s)	96, 363, 408, 451, 521, 736
ApeKI	GCWGC	1 cut(s)	650
ApoI	RAATTY	1 cut(s)	533
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
Asp700I	GAANNNNTTC	2 cut(s)	810, 887
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	2 cut(s)	363, 521
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	2 cut(s)	835, 892
AsuNHI	GCTAGC	1 cut(s)	646
BamHI	GGATCC	2 cut(s)	319, 753
BanI	GGYRCC	1 cut(s)	352
BanII	GRGCYC	3 cut(s)	191, 207, 460
BbsI	GAAGAC	1 cut(s)	302
Bbv12I	GWGCWC	2 cut(s)	191, 688
BbvCI	CCTCAGC	1 cut(s)	779
BbvI	GCAGC	1 cut(s)	662
BccI	CCATC	4 cut(s)	190, 301, 428, 778
BciT130I	CCWGG	2 cut(s)	589, 735
BciVI	GTATCC	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	4 cut(s)	86, 647, 815, 895
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	356
BfuI	GTATCC	1 cut(s)	28
BisI	GCNGC	4 cut(s)	93, 96, 651, 739
BlsI	GCNGC	4 cut(s)	94, 97, 652, 740
Bme1390I	CCNGG	3 cut(s)	455, 589, 735
BmgT120I	GGNCC	2 cut(s)	363, 521
BmiI	GGNNCC	4 cut(s)	273, 321, 354, 755
BmrFI	CCNGG	3 cut(s)	455, 589, 735
BmtI	GCTAGC	1 cut(s)	650
BpiI	GAAGAC	1 cut(s)	302
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
Bpu10I	CCTNAGC	2 cut(s)	701, 779
BpuEI	CTTGAG	2 cut(s)	379, 672
BpuMI	CCSGG	1 cut(s)	455
BsaHI	GRCGYC	2 cut(s)	90, 353
BsaJI	CCNNGG	3 cut(s)	93, 300, 588
Bsc4I	CCNNNNNNNGG	3 cut(s)	342, 406, 745
Bse1I	ACTGG	1 cut(s)	550
BseBI	CCWGG	2 cut(s)	589, 735
BseDI	CCNNGG	3 cut(s)	93, 300, 588
BseGI	GGATG	5 cut(s)	169, 439, 721, 789, 835
BseLI	CCNNNNNNNGG	3 cut(s)	342, 406, 745
BseMII	CTCAG	2 cut(s)	105, 770
BseNI	ACTGG	1 cut(s)	550
BseRI	GAGGAG	5 cut(s)	248, 293, 296, 305, 317
BseX3I	CGGCCG	2 cut(s)	96, 451
BseXI	GCAGC	1 cut(s)	662
Bsh1236I	CGCG	2 cut(s)	95, 329
Bsh1285I	CGRYCG	2 cut(s)	99, 454
BshFI	GGCC	6 cut(s)	98, 365, 410, 453, 523, 738
BshNI	GGYRCC	1 cut(s)	352
BsiEI	CGRYCG	2 cut(s)	99, 454
BsiHKAI	GWGCWC	2 cut(s)	191, 688
BsiSI	CCGG	2 cut(s)	275, 454
BslI	CCNNNNNNNGG	3 cut(s)	342, 406, 745
BsmAI	GTCTC	1 cut(s)	176
BsmBI	CGTCTC	1 cut(s)	176
BsnI	GGCC	6 cut(s)	98, 365, 410, 453, 523, 738
Bsp1286I	GDGCHC	4 cut(s)	191, 207, 460, 688
Bsp143I	GATC	4 cut(s)	319, 384, 671, 753
BspACI	CCGC	6 cut(s)	35, 93, 95, 151, 329, 739
BspANI	GGCC	6 cut(s)	98, 365, 410, 453, 523, 738
BspCNI	CTCAG	2 cut(s)	106, 771
BspFNI	CGCG	2 cut(s)	95, 329
BspLI	GGNNCC	4 cut(s)	273, 321, 354, 755
BspOI	GCTAGC	1 cut(s)	650
BspPI	GGATC	6 cut(s)	314, 327, 392, 679, 748, 761
BspQI	GCTCTTC	2 cut(s)	221, 233
BspT107I	GGYRCC	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	550
BssECI	CCNNGG	3 cut(s)	93, 300, 588
BssMI	GATC	4 cut(s)	319, 384, 671, 753
BssNI	GRCGYC	2 cut(s)	90, 353
Bst2UI	CCWGG	2 cut(s)	589, 735
Bst4CI	ACNGT	2 cut(s)	568, 683
Bst6I	CTCTTC	3 cut(s)	221, 233, 860
BstACI	GRCGYC	2 cut(s)	90, 353
BstC8I	GCNNGC	4 cut(s)	108, 203, 525, 648
BstDEI	CTNAG	4 cut(s)	114, 138, 701, 779
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	5 cut(s)	169, 439, 721, 789, 835
BstFNI	CGCG	2 cut(s)	95, 329
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	4 cut(s)	322, 387, 674, 756
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	4 cut(s)	319, 384, 671, 753
BstMCI	CGRYCG	2 cut(s)	99, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 186
BstNI	CCWGG	2 cut(s)	589, 735
BstSCI	CCNGG	3 cut(s)	453, 587, 733
BstSFI	CTRYAG	1 cut(s)	9
BstUI	CGCG	2 cut(s)	95, 329
BstV1I	GCAGC	1 cut(s)	662
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	3 cut(s)	319, 671, 753
BstYI	RGATCY	3 cut(s)	319, 671, 753
BstZI	CGGCCG	2 cut(s)	96, 451
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	6 cut(s)	98, 365, 410, 453, 523, 738
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	5 cut(s)	169, 439, 721, 789, 835
BtsIMutI	CAGTG	1 cut(s)	865
Cac8I	GCNNGC	4 cut(s)	108, 203, 525, 648
CaiI	CAGNNNCTG	1 cut(s)	113
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	2 cut(s)	363, 521
Cfr42I	CCGCGG	1 cut(s)	96
CseI	GACGC	1 cut(s)	98
CviAII	CATG	1 cut(s)	412
DdeI	CTNAG	4 cut(s)	114, 138, 701, 779
DinI	GGCGCC	1 cut(s)	354
DpnI	GATC	4 cut(s)	321, 386, 673, 755
DpnII	GATC	4 cut(s)	319, 384, 671, 753
EaeI	YGGCCR	3 cut(s)	96, 451, 736
EagI	CGGCCG	2 cut(s)	96, 451
Eam1104I	CTCTTC	3 cut(s)	221, 233, 860
EarI	CTCTTC	3 cut(s)	221, 233, 860
Ecl136II	GAGCTC	1 cut(s)	189
EclXI	CGGCCG	2 cut(s)	96, 451
Eco24I	GRGCYC	3 cut(s)	191, 207, 460
Eco52I	CGGCCG	2 cut(s)	96, 451
Eco53kI	GAGCTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	841
EcoICRI	GAGCTC	1 cut(s)	189
EcoRII	CCWGG	2 cut(s)	587, 733
EcoT38I	GRGCYC	3 cut(s)	191, 207, 460
EgeI	GGCGCC	1 cut(s)	354
EheI	GGCGCC	1 cut(s)	354
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	1 cut(s)	415
FaiI	YATR	7 cut(s)	11, 413, 552, 630, 664, 666, 743
FatI	CATG	1 cut(s)	411
FauI	CCCGC	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	556
Fnu4HI	GCNGC	4 cut(s)	93, 96, 651, 739
FokI	GGATG	5 cut(s)	176, 446, 728, 796, 842
FriOI	GRGCYC	3 cut(s)	191, 207, 460
Fsp4HI	GCNGC	4 cut(s)	93, 96, 651, 739
FspBI	CTAG	4 cut(s)	86, 647, 815, 895
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	4 cut(s)	93, 96, 651, 739
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	6 cut(s)	98, 365, 410, 453, 523, 738
HapII	CCGG	2 cut(s)	275, 454
HgaI	GACGC	1 cut(s)	98
HhaI	GCGC	1 cut(s)	355
Hin1I	GRCGYC	2 cut(s)	90, 353
Hin1II	CATG	1 cut(s)	415
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HindIII	AAGCTT	1 cut(s)	624
HinfI	GANTC	4 cut(s)	101, 134, 389, 506
HpaII	CCGG	2 cut(s)	275, 454
HphI	GGTGA	2 cut(s)	835, 892
Hpy166II	GTNNAC	1 cut(s)	557
Hpy188I	TCNGA	6 cut(s)	22, 48, 163, 193, 225, 345
Hpy188III	TCNNGA	1 cut(s)	689
Hpy8I	GTNNAC	1 cut(s)	557
HpyAV	CCTTC	8 cut(s)	15, 43, 124, 148, 253, 259, 367, 820
HpyCH4III	ACNGT	2 cut(s)	568, 683
HpyCH4V	TGCA	2 cut(s)	527, 863
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 186
HpyF3I	CTNAG	4 cut(s)	114, 138, 701, 779
Hsp92I	GRCGYC	2 cut(s)	90, 353
Hsp92II	CATG	1 cut(s)	415
HspAI	GCGC	1 cut(s)	353
KasI	GGCGCC	1 cut(s)	352
KspI	CCGCGG	1 cut(s)	96
Kzo9I	GATC	4 cut(s)	319, 384, 671, 753
LguI	GCTCTTC	2 cut(s)	221, 233
LmnI	GCTCC	3 cut(s)	177, 194, 271
Lsp1109I	GCAGC	1 cut(s)	662
MaeI	CTAG	4 cut(s)	86, 647, 815, 895
MalI	GATC	4 cut(s)	321, 386, 673, 755
MboI	GATC	4 cut(s)	319, 384, 671, 753
MflI	RGATCY	3 cut(s)	319, 671, 753
MhlI	GDGCHC	4 cut(s)	191, 207, 460, 688
MluCI	AATT	3 cut(s)	68, 368, 533
Mly113I	GGCGCC	1 cut(s)	353
MlyI	GAGTC	3 cut(s)	95, 143, 515
MmeI	TCCRAC	1 cut(s)	587
MroXI	GAANNNNTTC	2 cut(s)	810, 887
MseI	TTAA	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	2 cut(s)	275, 454
MspR9I	CCNGG	3 cut(s)	455, 589, 735
MvaI	CCWGG	2 cut(s)	589, 735
MvnI	CGCG	2 cut(s)	95, 329
MwoI	GCNNNNNNNGC	2 cut(s)	148, 186
NarI	GGCGCC	1 cut(s)	353
NciI	CCSGG	1 cut(s)	455
NdeII	GATC	4 cut(s)	319, 384, 671, 753
NheI	GCTAGC	1 cut(s)	646
NlaIII	CATG	1 cut(s)	415
NlaIV	GGNNCC	4 cut(s)	273, 321, 354, 755
NmeAIII	GCCGAG	1 cut(s)	897
PciSI	GCTCTTC	2 cut(s)	221, 233
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PdmI	GAANNNNTTC	2 cut(s)	810, 887
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	4 cut(s)	94, 97, 652, 740
PleI	GAGTC	3 cut(s)	95, 142, 514
PluTI	GGCGCC	1 cut(s)	356
PpsI	GAGTC	3 cut(s)	95, 142, 514
Psp124BI	GAGCTC	1 cut(s)	191
Psp6I	CCWGG	2 cut(s)	587, 733
PspGI	CCWGG	2 cut(s)	587, 733
PspN4I	GGNNCC	4 cut(s)	273, 321, 354, 755
PspPI	GGNCC	2 cut(s)	363, 521
PsrI	GAACNNNNNNTAC	2 cut(s)	825, 857
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	3 cut(s)	319, 671, 753
SacI	GAGCTC	1 cut(s)	191
SacII	CCGCGG	1 cut(s)	96
SapI	GCTCTTC	2 cut(s)	221, 233
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	4 cut(s)	93, 96, 651, 739
Sau3AI	GATC	4 cut(s)	319, 384, 671, 753
Sau96I	GGNCC	2 cut(s)	363, 521
SchI	GAGTC	3 cut(s)	95, 143, 515
ScrFI	CCNGG	3 cut(s)	455, 589, 735
SduI	GDGCHC	4 cut(s)	191, 207, 460, 688
SfcI	CTRYAG	1 cut(s)	9
SfoI	GGCGCC	1 cut(s)	354
Sfr303I	CCGCGG	1 cut(s)	96
SgrBI	CCGCGG	1 cut(s)	96
SmlI	CTYRAG	2 cut(s)	358, 687
SmoI	CTYRAG	2 cut(s)	358, 687
Sse9I	AATT	3 cut(s)	68, 368, 533
SsiI	CCGC	6 cut(s)	35, 93, 95, 151, 329, 739
SspDI	GGCGCC	1 cut(s)	352
SspMI	CTAG	4 cut(s)	86, 647, 815, 895
SstI	GAGCTC	1 cut(s)	191
StyD4I	CCNGG	3 cut(s)	453, 587, 733
TaaI	ACNGT	2 cut(s)	568, 683
TaqI	TCGA	4 cut(s)	125, 387, 420, 460
TaqII	GACCGA	1 cut(s)	314
TasI	AATT	3 cut(s)	68, 368, 533
TauI	GCSGC	3 cut(s)	95, 98, 741
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	1 cut(s)	865
TseI	GCWGC	1 cut(s)	650
TspDTI	ATGAA	3 cut(s)	77, 777, 786
TspRI	CASTG	1 cut(s)	865
XapI	RAATTY	1 cut(s)	533
XmiI	GTMKAC	1 cut(s)	556
XmnI	GAANNNNTTC	2 cut(s)	810, 887
XspI	CTAG	4 cut(s)	86, 647, 815, 895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.