Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0018922

Physical Location & Seq

Genomic Coordinates Reverse (-)

77280 .. 77941

Gene Structure 662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g00140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCTGCTGCTCGAAGAGATGTACTTGATATTGGCAACATTTTTAGGGCCAAGGCTGTTGACGTTTCTGGTAATGATCGATCACACAATAACCCTTGAGCTAACAGGAGACCTGGACAAGATGGTTGCATTGCAGAGGTTGTTAGAGCCCTATGGAATTTGTGAGGTGGCGCGTACTGGACGAATTGCACTGGTGCGTGAGTCAGGTGTGGATTCGAAATACCTGCGTGGATATTCTTTTCCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0005948 GO:0006082 GO:0006520 GO:0006549 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009097 GO:0009099 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0032991 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

ACT ACT_5 ALS_ss_C

Protein Analysis

83

Amino Acids

9.32

Weight (kDa)

5.21

Isoelectric Point (pI)

30.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018922)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00140
rosa_chinensis	RchiOBHm_Chr5g0025461
rosa_multiflora	Rmu_co8399419.1_g000001 Rmu_sc0000438.1_g000013 Rmu_sc0016852.1_g000007
rosa_samantha	Rh5DG176900
rosa_wichuraiana	Rw1G008670 Rw1G025300 Rw4G002960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	231
AccII	CGCG	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	156
AfaI	GTAC	2 cut(s)	23, 175
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
Alw26I	GTCTC	1 cut(s)	102
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	2 cut(s)	4, 7
ApoI	RAATTY	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	47
AsuII	TTCGAA	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	150
BccI	CCATC	1 cut(s)	115
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciT130I	CCWGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	245
BfuAI	ACCTGC	1 cut(s)	231
BisI	GCNGC	2 cut(s)	5, 8
BlsI	GCNGC	2 cut(s)	6, 9
Bme1390I	CCNGG	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	113
Bpu14I	TTCGAA	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	116
Bsa29I	ATCGAT	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	50
Bse1I	ACTGG	2 cut(s)	181, 195
Bse3DI	GCAATG	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	113
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	128
BseNI	ACTGG	2 cut(s)	181, 195
Bsh1236I	CGCG	1 cut(s)	172
BshFI	GGCC	1 cut(s)	49
BshVI	ATCGAT	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	49
Bso31I	GGTCTC	1 cut(s)	102
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	75, 79
BspANI	GGCC	1 cut(s)	49
BspDI	ATCGAT	1 cut(s)	78
BspFNI	CGCG	1 cut(s)	172
BspMI	ACCTGC	1 cut(s)	231
BspT104I	TTCGAA	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	181, 195
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	2 cut(s)	75, 79
BssT1I	CCWWGG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	113
Bst6I	CTCTTC	1 cut(s)	9
BstBI	TTCGAA	1 cut(s)	215
BstFNI	CGCG	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	2 cut(s)	78, 82
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	2 cut(s)	75, 79
BstNI	CCWGG	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	245
BstUI	CGCG	1 cut(s)	172
Bsu15I	ATCGAT	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	49
BsuTUI	ATCGAT	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	188
BveI	ACCTGC	1 cut(s)	231
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	47
ClaI	ATCGAT	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	22, 174
CviJI	RGCY	4 cut(s)	49, 55, 100, 148
CviKI_1	RGCY	4 cut(s)	49, 55, 100, 148
CviQI	GTAC	2 cut(s)	22, 174
DpnI	GATC	2 cut(s)	77, 81
DpnII	GATC	2 cut(s)	75, 79
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	50
FaiI	YATR	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	5, 8
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	5, 8
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	2 cut(s)	5, 8
HaeIII	GGCC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HinfI	GANTC	2 cut(s)	200, 212
Hpy166II	GTNNAC	1 cut(s)	60
Hpy8I	GTNNAC	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	3 cut(s)	128, 133, 188
HpySE526I	ACGT	1 cut(s)	62
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	2 cut(s)	75, 79
LpnPI	CCDG	8 cut(s)	53, 90, 98, 125, 162, 176, 189, 236
MaeII	ACGT	1 cut(s)	62
MalI	GATC	2 cut(s)	77, 81
MboI	GATC	2 cut(s)	75, 79
MboII	GAAGA	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	2 cut(s)	156, 183
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	2 cut(s)	129, 157
MspR9I	CCNGG	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	172
NdeII	GATC	2 cut(s)	75, 79
NspV	TTCGAA	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	6, 9
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	47
RsaI	GTAC	2 cut(s)	23, 175
RsaNI	GTAC	2 cut(s)	22, 174
SatI	GCNGC	2 cut(s)	5, 8
Sau3AI	GATC	2 cut(s)	75, 79
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	7 cut(s)	65, 102, 114, 140, 168, 208, 225
SfcI	CTRYAG	1 cut(s)	245
SfuI	TTCGAA	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	2 cut(s)	156, 183
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	50
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	3 cut(s)	12, 78, 215
TasI	AATT	2 cut(s)	156, 183
TatI	WGTACW	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	212
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	2 cut(s)	4, 7
TspRI	CASTG	1 cut(s)	195
XapI	RAATTY	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.