Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8399419.1

Orthogroup ID

OG0018922

Physical Location & Seq

Genomic Coordinates Forward (+)

387 .. 901

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8399419.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atgtttaaaaatgaaggaatagaaaggatctatgtcgagtataggcctggcgagatcaaaagagtctccggcatccccaatgaacatcttcgcagaaagctcacaggagacctgaacaagatggttgcactgcagagattgttagaaccctatgggatttgtgagatttgtcctgcaatcttagtggcgcgtactggaagaattgctctggtgcgtgagtcaggagttgattctagatatctccgtggatcttcttttcctctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004652 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

NTP_transf_2 PAP_RNA-bind PAP_central

Protein Analysis

88

Amino Acids

10.03

Weight (kDa)

9.62

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018922)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00140
rosa_chinensis	RchiOBHm_Chr5g0025461
rosa_multiflora	Rmu_co8399419.1_g000001 Rmu_sc0000438.1_g000013 Rmu_sc0016852.1_g000007
rosa_samantha	Rh5DG176900
rosa_wichuraiana	Rw1G008670 Rw1G025300 Rw4G002960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	190
AclWI	GGATC	2 cut(s)	35, 256
AfaI	GTAC	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
Alw26I	GTCTC	2 cut(s)	70, 102
AlwI	GGATC	2 cut(s)	35, 256
AoxI	GGCC	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	190
BccI	CCATC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	48
BcoDI	GTCTC	2 cut(s)	70, 102
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	190
BshFI	GGCC	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	69
BsmAI	GTCTC	2 cut(s)	70, 102
BsnI	GGCC	1 cut(s)	46
Bso31I	GGTCTC	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	27, 54, 248
BspANI	GGCC	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	190
BspMAI	CTGCAG	1 cut(s)	135
BspPI	GGATC	2 cut(s)	35, 256
BspTNI	GGTCTC	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	3 cut(s)	27, 54, 248
Bst2UI	CCWGG	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	181
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	3 cut(s)	30, 57, 251
BstMAI	GTCTC	2 cut(s)	70, 102
BstMBI	GATC	3 cut(s)	27, 54, 248
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstSFI	CTRYAG	1 cut(s)	131
BstUI	CGCG	1 cut(s)	190
BstX2I	RGATCY	2 cut(s)	27, 248
BstYI	RGATCY	2 cut(s)	27, 248
BsuRI	GGCC	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	72
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	128
CfoI	GCGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	192
CspCI	CAANNNNNGTGG	2 cut(s)	165, 200
CviJI	RGCY	2 cut(s)	46, 100
CviKI_1	RGCY	2 cut(s)	46, 100
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	1 cut(s)	181
DpnI	GATC	3 cut(s)	29, 56, 250
DpnII	GATC	3 cut(s)	27, 54, 248
DraI	TTTAAA	1 cut(s)	7
Eco147I	AGGCCT	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	46
EcoRV	GATATC	1 cut(s)	239
FaiI	YATR	3 cut(s)	33, 42, 153
FokI	GGATG	1 cut(s)	59
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	1 cut(s)	190
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	3 cut(s)	63, 218, 230
HpaII	CCGG	1 cut(s)	69
Hpy188III	TCNNGA	2 cut(s)	222, 234
HpyAV	CCTTC	1 cut(s)	8
HpyCH4V	TGCA	3 cut(s)	128, 133, 176
HpyF3I	CTNAG	1 cut(s)	181
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	3 cut(s)	27, 54, 248
LpnPI	CCDG	9 cut(s)	33, 60, 82, 90, 125, 180, 186, 194, 207
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	234
MalI	GATC	3 cut(s)	29, 56, 250
MboI	GATC	3 cut(s)	27, 54, 248
MboII	GAAGA	3 cut(s)	80, 210, 243
MflI	RGATCY	2 cut(s)	27, 248
MluCI	AATT	1 cut(s)	201
MlyI	GAGTC	2 cut(s)	72, 227
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	1 cut(s)	6
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	190
NdeII	GATC	3 cut(s)	27, 54, 248
PceI	AGGCCT	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	230
PleI	GAGTC	2 cut(s)	71, 226
PpsI	GAGTC	2 cut(s)	71, 226
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	135
PsuI	RGATCY	2 cut(s)	27, 248
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	27, 54, 248
SchI	GAGTC	2 cut(s)	72, 227
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	2 cut(s)	102, 114
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	201
SseBI	AGGCCT	1 cut(s)	46
SspMI	CTAG	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	46
TaqI	TCGA	1 cut(s)	36
TasI	AATT	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	135
TspDTI	ATGAA	2 cut(s)	27, 96
TspGWI	ACGGA	1 cut(s)	233
TspRI	CASTG	1 cut(s)	135
XbaI	TCTAGA	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.