Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0019810

Physical Location & Seq

Genomic Coordinates Forward (+)

2728306 .. 2729132

Gene Structure 827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTCCATCAAGGACCGCAGCTTAGTTGATAAGAAGCAGTTTGATAAAATCCTAACCTACATTGAGCATGGTAAGAATGGAGGAGCCACTTTATTAACAGGGGGCAAGCCTGTGGGGAACAAGGGATATTACATTGAACCTACAATATTCACTGATGTCAAGGATGACATGCTCATAGCCCAAGTTGAAATATTCGGACCAGTAATGGCACTGATGAAGTTCAAGACAATCGAGGAGGCGATACAGAGAGCCAACAACACCAGATACGGCCTAGCAGCAGGGATCATAACCAATGACTTGAATGTGGCCAACACTGTCTCAAGGTCAATTCGTGCGGGCATTATTTGGATCAACTGCTACTTTGAATGCGATCTAGACTGCCCTGGCGGAGGGTATAAGATGAGTGGATTTGGAAGAGAGTCTGGTATGCAGGGCCTCTATGAGTATCTCCATACCAAATCTGTTGTCACTCCCATTTATAACTCCCCCTGGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

166

Amino Acids

18.31

Weight (kDa)

7.66

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	8 - 155	1e-53	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019810)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04130 pycom02g04150 pycom02g04170
rosa_chinensis	RchiOBHm_Chr3g0491931
rosa_multiflora	Rmu_sc0023176.1_g000001 Rmu_sc0041478.1_g000001
rosa_samantha	Rh3CG333900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
AciI	CCGC	3 cut(s)	16, 335, 387
AclWI	GGATC	2 cut(s)	290, 356
AcoI	YGGCCR	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	389
AgsI	TTSAA	5 cut(s)	137, 188, 223, 301, 365
AjnI	CCWGG	2 cut(s)	382, 488
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	2 cut(s)	290, 356
AoxI	GGCC	3 cut(s)	268, 306, 433
ApeKI	GCWGC	2 cut(s)	18, 275
ArsI	GACNNNNNNTTYG	2 cut(s)	450, 482
AspS9I	GGNCC	3 cut(s)	13, 197, 433
AvaII	GGWCC	2 cut(s)	13, 197
BalI	TGGCCA	1 cut(s)	308
BbvI	GCAGC	2 cut(s)	30, 287
BccI	CCATC	1 cut(s)	14
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	2 cut(s)	384, 490
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	2 cut(s)	272, 374
BisI	GCNGC	2 cut(s)	19, 276
BlsI	GCNGC	2 cut(s)	20, 277
Bme1390I	CCNGG	2 cut(s)	384, 490
Bme18I	GGWCC	2 cut(s)	13, 197
BmgT120I	GGNCC	3 cut(s)	13, 197, 433
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	2 cut(s)	384, 490
BpuEI	CTTGAG	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	382, 488
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	200
BseBI	CCWGG	2 cut(s)	384, 490
BseDI	CCNNGG	2 cut(s)	382, 488
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	2 cut(s)	96, 248
BseXI	GCAGC	2 cut(s)	30, 287
BshFI	GGCC	3 cut(s)	270, 308, 435
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	3 cut(s)	270, 308, 435
Bsp143I	GATC	3 cut(s)	282, 348, 370
BspACI	CCGC	3 cut(s)	16, 335, 387
BspANI	GGCC	3 cut(s)	270, 308, 435
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	2 cut(s)	290, 356
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	382, 488
BssMI	GATC	3 cut(s)	282, 348, 370
Bst2UI	CCWGG	2 cut(s)	384, 490
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	409
BstC8I	GCNNGC	2 cut(s)	107, 337
BstDEI	CTNAG	1 cut(s)	22
BstENI	CCTNNNNNAGG	1 cut(s)	387
BstF5I	GGATG	1 cut(s)	169
BstKTI	GATC	3 cut(s)	285, 351, 373
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	3 cut(s)	282, 348, 370
BstNI	CCWGG	2 cut(s)	384, 490
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	2 cut(s)	382, 488
BstV1I	GCAGC	2 cut(s)	30, 287
BsuRI	GGCC	3 cut(s)	270, 308, 435
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	3 cut(s)	150, 209, 312
Cac8I	GCNNGC	2 cut(s)	107, 337
Cfr13I	GGNCC	3 cut(s)	13, 197, 433
CviAII	CATG	2 cut(s)	68, 169
CviJI	RGCY	9 cut(s)	21, 86, 109, 179, 251, 270, 308, 435, 493
CviKI_1	RGCY	9 cut(s)	21, 86, 109, 179, 251, 270, 308, 435, 493
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	3 cut(s)	284, 350, 372
DpnII	GATC	3 cut(s)	282, 348, 370
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	409
EarI	CTCTTC	1 cut(s)	409
EciI	GGCGGA	1 cut(s)	402
Eco47I	GGWCC	2 cut(s)	13, 197
EcoNI	CCTNNNNNAGG	1 cut(s)	387
EcoO109I	RGGNCCY	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	382, 488
FaeI	CATG	2 cut(s)	71, 172
FaiI	YATR	9 cut(s)	69, 170, 176, 287, 396, 428, 441, 453, 480
FatI	CATG	2 cut(s)	67, 168
FauI	CCCGC	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	19, 276
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	19, 276
FspBI	CTAG	2 cut(s)	272, 374
GluI	GCNGC	2 cut(s)	19, 276
HaeIII	GGCC	3 cut(s)	270, 308, 435
Hin1II	CATG	2 cut(s)	71, 172
HinfI	GANTC	1 cut(s)	419
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	2 cut(s)	223, 374
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	1 cut(s)	430
HpyF3I	CTNAG	1 cut(s)	22
Hsp92II	CATG	2 cut(s)	71, 172
Kzo9I	GATC	3 cut(s)	282, 348, 370
LmnI	GCTCC	1 cut(s)	83
Lsp1109I	GCAGC	2 cut(s)	30, 287
MaeI	CTAG	2 cut(s)	272, 374
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	3 cut(s)	284, 350, 372
MboI	GATC	3 cut(s)	282, 348, 370
MboII	GAAGA	1 cut(s)	426
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	1 cut(s)	327
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	428
MnlI	CCTC	5 cut(s)	74, 226, 229, 383, 446
Mox20I	TGGCCA	1 cut(s)	308
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	308
MspR9I	CCNGG	2 cut(s)	384, 490
Mva1269I	GAATGC	1 cut(s)	371
MvaI	CCWGG	2 cut(s)	384, 490
NdeII	GATC	3 cut(s)	282, 348, 370
NlaIII	CATG	2 cut(s)	71, 172
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	1 cut(s)	172
PctI	GAATGC	1 cut(s)	371
PkrI	GCNGC	2 cut(s)	20, 277
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PsiI	TTATAA	1 cut(s)	480
Psp6I	CCWGG	2 cut(s)	382, 488
PspGI	CCWGG	2 cut(s)	382, 488
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	3 cut(s)	13, 197, 433
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	2 cut(s)	19, 276
Sau3AI	GATC	3 cut(s)	282, 348, 370
Sau96I	GGNCC	3 cut(s)	13, 197, 433
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	2 cut(s)	384, 490
SetI	ASST	4 cut(s)	23, 59, 142, 326
SinI	GGWCC	2 cut(s)	13, 197
SmlI	CTYRAG	1 cut(s)	319
SmoI	CTYRAG	1 cut(s)	319
Sse9I	AATT	1 cut(s)	327
SsiI	CCGC	3 cut(s)	16, 335, 387
SspI	AATATT	2 cut(s)	147, 192
SspMI	CTAG	2 cut(s)	272, 374
StyD4I	CCNGG	2 cut(s)	382, 488
TaaI	ACNGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	231
TasI	AATT	1 cut(s)	327
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	3 cut(s)	157, 216, 319
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	2 cut(s)	18, 275
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	1 cut(s)	230
TspRI	CASTG	3 cut(s)	157, 216, 319
VpaK11BI	GGWCC	2 cut(s)	13, 197
XagI	CCTNNNNNAGG	1 cut(s)	387
XbaI	TCTAGA	1 cut(s)	373
XceI	RCATGY	1 cut(s)	172
XspI	CTAG	2 cut(s)	272, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.