Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0019810

Physical Location & Seq

Genomic Coordinates Forward (+)

2738465 .. 2739110

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCGAAAACAACGGCCCCAAACTTTATTAACAGGAGGCAAGCCTTTGGGGAACAAGGGATATTACATTGAGCCTACAATATTCACTGATGTCAAGGATGATATGCTCATAGCCCGAGATGAAATATTTGGACCCGTAATGGCGCTGATGAAGTTCAAGACAATCGAGGAGGCAATACAGAGAGCCAACAACACCAGATACGGCCTAGCAGCAGGGATCATAACCAGGGACTTGAATGTGGCCAACACCGTCTCAAGGTCAATTCGTGCGGGGTATAAGATGAGTGGATTTGGAAGAGACTTTTGTATGCAGGCCCTCTATAAATATCTCCATAGCAAATCTGTTGTCACTCTCATTTATAACTCCCCCTGGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

126

Amino Acids

14.17

Weight (kDa)

9.79

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	7 - 91	4.5e-31	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0019810)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04130 pycom02g04150 pycom02g04170
rosa_chinensis	RchiOBHm_Chr3g0491931
rosa_multiflora	Rmu_sc0023176.1_g000001 Rmu_sc0041478.1_g000001
rosa_samantha	Rh3CG333900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	360
AciI	CCGC	1 cut(s)	269
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	2 cut(s)	157, 235
AjnI	CCWGG	2 cut(s)	224, 368
Alw26I	GTCTC	2 cut(s)	256, 291
AlwI	GGATC	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	4 cut(s)	14, 202, 240, 312
ApeKI	GCWGC	1 cut(s)	209
ArsI	GACNNNNNNTTYG	2 cut(s)	330, 362
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	3 cut(s)	15, 131, 313
AvaI	CYCGRG	1 cut(s)	114
AvaII	GGWCC	1 cut(s)	131
BalI	TGGCCA	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	221
BceAI	ACGGC	2 cut(s)	29, 217
BciT130I	CCWGG	2 cut(s)	226, 370
BcoDI	GTCTC	2 cut(s)	256, 291
BfaI	CTAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	146
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
Bme1390I	CCNGG	2 cut(s)	226, 370
Bme18I	GGWCC	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	3 cut(s)	15, 131, 313
BmiI	GGNNCC	2 cut(s)	17, 133
BmrFI	CCNGG	2 cut(s)	226, 370
BpuEI	CTTGAG	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	225, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	226, 370
BseDI	CCNNGG	2 cut(s)	225, 368
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	221
BshFI	GGCC	4 cut(s)	16, 204, 242, 314
BsiHKCI	CYCGRG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	2 cut(s)	256, 291
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	4 cut(s)	16, 204, 242, 314
BsoBI	CYCGRG	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	216
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	4 cut(s)	16, 204, 242, 314
BspLI	GGNNCC	2 cut(s)	17, 133
BspPI	GGATC	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	225, 368
BssMI	GATC	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	226, 370
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	289
BstC8I	GCNNGC	2 cut(s)	41, 312
BstF5I	GGATG	1 cut(s)	103
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	2 cut(s)	256, 291
BstMBI	GATC	1 cut(s)	216
BstNI	CCWGG	2 cut(s)	226, 370
BstSCI	CCNGG	2 cut(s)	224, 368
BstV1I	GCAGC	1 cut(s)	221
BsuRI	GGCC	4 cut(s)	16, 204, 242, 314
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	41, 312
CfoI	GCGC	1 cut(s)	145
Cfr13I	GGNCC	3 cut(s)	15, 131, 313
CviJI	RGCY	9 cut(s)	16, 43, 73, 113, 185, 204, 242, 314, 373
CviKI_1	RGCY	9 cut(s)	16, 43, 73, 113, 185, 204, 242, 314, 373
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRII	CCWGG	2 cut(s)	224, 368
Esp3I	CGTCTC	1 cut(s)	256
FaiI	YATR	8 cut(s)	104, 110, 221, 276, 308, 321, 333, 360
FaqI	GGGAC	1 cut(s)	242
FauI	CCCGC	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	4 cut(s)	16, 204, 242, 314
HhaI	GCGC	1 cut(s)	145
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
Hpy188III	TCNNGA	1 cut(s)	157
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	1 cut(s)	310
HspAI	GCGC	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	216
LpnPI	CCDG	7 cut(s)	18, 198, 208, 211, 238, 296, 355
Lsp1109I	GCAGC	1 cut(s)	221
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	1 cut(s)	306
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	1 cut(s)	261
MluNI	TGGCCA	1 cut(s)	242
MnlI	CCTC	4 cut(s)	29, 160, 163, 326
Mox20I	TGGCCA	1 cut(s)	242
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	1 cut(s)	29
Msp20I	TGGCCA	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	226, 370
MvaI	CCWGG	2 cut(s)	226, 370
NdeII	GATC	1 cut(s)	216
NlaIV	GGNNCC	2 cut(s)	17, 133
NmuCI	GTSAC	1 cut(s)	346
PkrI	GCNGC	1 cut(s)	211
PsiI	TTATAA	1 cut(s)	360
Psp6I	CCWGG	2 cut(s)	224, 368
PspGI	CCWGG	2 cut(s)	224, 368
PspN4I	GGNNCC	2 cut(s)	17, 133
PspPI	GGNCC	3 cut(s)	15, 131, 313
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	216
Sau96I	GGNCC	3 cut(s)	15, 131, 313
ScrFI	CCNGG	2 cut(s)	226, 370
SetI	ASST	1 cut(s)	260
SinI	GGWCC	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	1 cut(s)	261
SsiI	CCGC	1 cut(s)	269
SspI	AATATT	2 cut(s)	81, 126
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	2 cut(s)	224, 368
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	165
TasI	AATT	1 cut(s)	261
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	2 cut(s)	135, 164
TspRI	CASTG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	131
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.