Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0019810

Physical Location & Seq

Genomic Coordinates Reverse (-)

37212587 .. 37216426

Gene Structure 3840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG333900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGTGGCCAAAATGATGGAAGCTCTACGTGTTCCGAGGAGTCTTTTGTGAAGATGCCAACGATAAAGTTCACCAAGCTCTTCATCAATGGAGAATTCATCGATTCCGTTTCAGGAAAAACATTCGAGACGATAGATCCAAGAACAGGGGAGGTGATAACCAGAGTGGCAGAAGGAGATAAGGAAGACGTGGATTTCGCCGTGAAAGCTGCACGCACCGCCTTTGACCATGGCCCCTGGCCTCGCTTACCCGGCGCTGTAGATAAAATGCAGTATGAGAAAATCTTGACCTACATTGAGCATGGCAAAAGACAAGGAGCAACTTTGTTAACAGGGGGCAAGCCTGTGGGGAAGAAGGGTTATTTCATTGAGCCAACAATATTCACTGATGTCATGGATGACATGCTTATAGCCACGGATGAAATATTCGGACCTGTCATGTCGCTAATGAAGTTCAAGACAATTGAGGAGGGAATAGAGAGAGCCAACAAAACCAAATATGGCGCAGCAGCCGGCATTGTAACCAAGAACATCGATGTGGCCAACACCGTCTCAAGATCTATCCGCGCGGGCACTATATGGATCAACTGCTACTTTGCCTTTGGCAACGATGTCCCTTTTGGAGGATACAAGATGAGTGGCTTTGGAAAAGACTTTGGTATGCAGGGCCACCACAAGTATCTGCATACTAAATCTGTGGTCACTCCCATTTATAACTCTCCCTGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

243

Amino Acids

26.81

Weight (kDa)

6.97

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	34 - 84	3.3e-07	Aldehyde dehydrogenase family
Aldedh	PF00171	87 - 233	6.7e-51	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019810)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04130 pycom02g04150 pycom02g04170
rosa_chinensis	RchiOBHm_Chr3g0491931
rosa_multiflora	Rmu_sc0023176.1_g000001 Rmu_sc0041478.1_g000001
rosa_samantha	Rh3CG333900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	714
AccII	CGCG	2 cut(s)	567, 569
AciI	CCGC	3 cut(s)	219, 565, 569
AclWI	GGATC	2 cut(s)	131, 590
AcoI	YGGCCR	2 cut(s)	7, 540
AcsI	RAATTY	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	146, 623
AflIII	ACRYGT	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	457
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	2 cut(s)	236, 722
AluBI	AGCT	3 cut(s)	24, 79, 209
AluI	AGCT	3 cut(s)	24, 79, 209
Alw26I	GTCTC	2 cut(s)	122, 556
AlwI	GGATC	2 cut(s)	131, 590
AoxI	GGCC	5 cut(s)	7, 232, 239, 540, 667
ApeKI	GCWGC	3 cut(s)	209, 506, 509
ApoI	RAATTY	1 cut(s)	95
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AspLEI	GCGC	3 cut(s)	257, 506, 569
AspS9I	GGNCC	3 cut(s)	233, 431, 667
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	64, 166
AvaII	GGWCC	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	575
BalI	TGGCCA	2 cut(s)	9, 542
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	3 cut(s)	196, 518, 521
BccI	CCATC	1 cut(s)	11
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	2 cut(s)	238, 724
BciVI	GTATCC	1 cut(s)	620
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	2 cut(s)	122, 556
BfmI	CTRYAG	1 cut(s)	258
BfoI	RGCGCY	1 cut(s)	258
BfuI	GTATCC	1 cut(s)	620
BglII	AGATCT	1 cut(s)	557
BisI	GCNGC	3 cut(s)	210, 507, 510
BlsI	GCNGC	3 cut(s)	211, 508, 511
Bme1390I	CCNGG	3 cut(s)	238, 252, 724
Bme18I	GGWCC	1 cut(s)	431
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	3 cut(s)	233, 431, 667
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	3 cut(s)	238, 252, 724
BmsI	GCATC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	538
BpuMI	CCSGG	1 cut(s)	252
Bsa29I	ATCGAT	2 cut(s)	102, 534
BsaAI	YACGTR	1 cut(s)	30
BsaJI	CCNNGG	5 cut(s)	36, 229, 236, 414, 722
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 623
Bse118I	RCCGGY	1 cut(s)	512
BseBI	CCWGG	2 cut(s)	238, 724
BseCI	ATCGAT	2 cut(s)	102, 534
BseDI	CCNNGG	5 cut(s)	36, 229, 236, 414, 722
BseGI	GGATG	2 cut(s)	403, 424
BseLI	CCNNNNNNNGG	2 cut(s)	146, 623
BseRI	GAGGAG	2 cut(s)	53, 482
BseSI	GKGCMC	1 cut(s)	575
BseXI	GCAGC	3 cut(s)	196, 518, 521
BsgI	GTGCAG	1 cut(s)	195
Bsh1236I	CGCG	2 cut(s)	567, 569
BshFI	GGCC	5 cut(s)	9, 234, 241, 542, 669
BshVI	ATCGAT	2 cut(s)	102, 534
BsiSI	CCGG	2 cut(s)	252, 513
BslFI	GGGAC	1 cut(s)	599
BslI	CCNNNNNNNGG	2 cut(s)	146, 623
BsmAI	GTCTC	2 cut(s)	122, 556
BsmBI	CGTCTC	2 cut(s)	122, 556
BsmFI	GGGAC	1 cut(s)	599
BsnI	GGCC	5 cut(s)	9, 234, 241, 542, 669
Bsp1286I	GDGCHC	1 cut(s)	575
Bsp143I	GATC	3 cut(s)	136, 557, 582
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	3 cut(s)	219, 565, 569
BspANI	GGCC	5 cut(s)	9, 234, 241, 542, 669
BspDI	ATCGAT	2 cut(s)	102, 534
BspFNI	CGCG	2 cut(s)	567, 569
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	131, 590
BspQI	GCTCTTC	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	512
BssAI	RCCGGY	1 cut(s)	512
BssECI	CCNNGG	5 cut(s)	36, 229, 236, 414, 722
BssMI	GATC	3 cut(s)	136, 557, 582
BssT1I	CCWWGG	1 cut(s)	229
Bst2UI	CCWGG	2 cut(s)	238, 724
Bst4CI	ACNGT	1 cut(s)	550
Bst6I	CTCTTC	1 cut(s)	86
BstBAI	YACGTR	1 cut(s)	30
BstC8I	GCNNGC	4 cut(s)	214, 341, 514, 571
BstDSI	CCRYGG	2 cut(s)	229, 414
BstENI	CCTNNNNNAGG	1 cut(s)	621
BstF5I	GGATG	2 cut(s)	403, 424
BstFNI	CGCG	2 cut(s)	567, 569
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	3 cut(s)	257, 506, 569
BstKTI	GATC	3 cut(s)	139, 560, 585
BstMAI	GTCTC	2 cut(s)	122, 556
BstMBI	GATC	3 cut(s)	136, 557, 582
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 218, 252
BstNI	CCWGG	2 cut(s)	238, 724
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	3 cut(s)	236, 250, 722
BstSFI	CTRYAG	1 cut(s)	258
BstSLI	GKGCMC	1 cut(s)	575
BstUI	CGCG	2 cut(s)	567, 569
BstV1I	GCAGC	3 cut(s)	196, 518, 521
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	2 cut(s)	136, 557
BstXI	CCANNNNNNTGG	1 cut(s)	17
BstYI	RGATCY	2 cut(s)	136, 557
Bsu15I	ATCGAT	2 cut(s)	102, 534
BsuI	GTATCC	1 cut(s)	620
BsuRI	GGCC	5 cut(s)	9, 234, 241, 542, 669
BsuTUI	ATCGAT	2 cut(s)	102, 534
BtgI	CCRYGG	2 cut(s)	229, 414
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	403, 424
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	4 cut(s)	214, 341, 514, 571
CfoI	GCGC	3 cut(s)	257, 506, 569
Cfr10I	RCCGGY	1 cut(s)	512
Cfr13I	GGNCC	3 cut(s)	233, 431, 667
ClaI	ATCGAT	2 cut(s)	102, 534
CspCI	CAANNNNNGTGG	2 cut(s)	619, 654
CviAII	CATG	5 cut(s)	230, 302, 394, 403, 439
DpnI	GATC	3 cut(s)	138, 559, 584
DpnII	GATC	3 cut(s)	136, 557, 582
EaeI	YGGCCR	2 cut(s)	7, 540
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	431
EcoNI	CCTNNNNNAGG	1 cut(s)	621
EcoRI	GAATTC	1 cut(s)	95
EcoRII	CCWGG	2 cut(s)	236, 722
EcoT14I	CCWWGG	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	229
Esp3I	CGTCTC	2 cut(s)	122, 556
FaeI	CATG	5 cut(s)	233, 305, 397, 406, 442
FaqI	GGGAC	1 cut(s)	599
FatI	CATG	5 cut(s)	229, 301, 393, 402, 438
FauI	CCCGC	1 cut(s)	562
Fnu4HI	GCNGC	3 cut(s)	210, 507, 510
FokI	GGATG	2 cut(s)	410, 431
Fsp4HI	GCNGC	3 cut(s)	210, 507, 510
GlaI	GCGC	3 cut(s)	256, 505, 568
GluI	GCNGC	3 cut(s)	210, 507, 510
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	5 cut(s)	9, 234, 241, 542, 669
HapII	CCGG	2 cut(s)	252, 513
HhaI	GCGC	3 cut(s)	257, 506, 569
Hin1II	CATG	5 cut(s)	233, 305, 397, 406, 442
Hin6I	GCGC	3 cut(s)	255, 504, 567
HinP1I	GCGC	3 cut(s)	255, 504, 567
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	2 cut(s)	41, 104
HpaI	GTTAAC	1 cut(s)	330
HpaII	CCGG	2 cut(s)	252, 513
HphI	GGTGA	2 cut(s)	64, 166
Hpy166II	GTNNAC	2 cut(s)	72, 330
Hpy188I	TCNGA	3 cut(s)	37, 431, 731
Hpy188III	TCNNGA	5 cut(s)	114, 127, 286, 457, 555
Hpy8I	GTNNAC	2 cut(s)	72, 330
HpyAV	CCTTC	2 cut(s)	167, 349
HpyCH4III	ACNGT	1 cut(s)	550
HpyCH4IV	ACGT	2 cut(s)	29, 189
HpyCH4V	TGCA	4 cut(s)	212, 271, 664, 685
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 218, 252
HpySE526I	ACGT	2 cut(s)	29, 189
Hsp92II	CATG	5 cut(s)	233, 305, 397, 406, 442
HspAI	GCGC	3 cut(s)	255, 504, 567
KroI	GCCGGC	1 cut(s)	512
KroNI	GCCGGC	1 cut(s)	514
KspAI	GTTAAC	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	136, 557, 582
LguI	GCTCTTC	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	317
Lsp1109I	GCAGC	3 cut(s)	196, 518, 521
LweI	GCATC	1 cut(s)	45
MaeII	ACGT	2 cut(s)	29, 189
MaeIII	GTNAC	2 cut(s)	520, 700
MalI	GATC	3 cut(s)	138, 559, 584
MboI	GATC	3 cut(s)	136, 557, 582
MboII	GAAGA	4 cut(s)	64, 73, 197, 364
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	2 cut(s)	136, 557
MhlI	GDGCHC	1 cut(s)	575
MlsI	TGGCCA	2 cut(s)	9, 542
MluCI	AATT	2 cut(s)	95, 462
MluNI	TGGCCA	2 cut(s)	9, 542
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	6 cut(s)	31, 145, 252, 460, 463, 617
Mox20I	TGGCCA	2 cut(s)	9, 542
MroNI	GCCGGC	1 cut(s)	512
MscI	TGGCCA	2 cut(s)	9, 542
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	536
Msp20I	TGGCCA	2 cut(s)	9, 542
MspI	CCGG	2 cut(s)	252, 513
MspR9I	CCNGG	3 cut(s)	238, 252, 724
MunI	CAATTG	1 cut(s)	462
MvaI	CCWGG	2 cut(s)	238, 724
MvnI	CGCG	2 cut(s)	567, 569
MwoI	GCNNNNNNNGC	3 cut(s)	206, 218, 252
NaeI	GCCGGC	1 cut(s)	514
NciI	CCSGG	1 cut(s)	252
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	3 cut(s)	136, 557, 582
NgoMIV	GCCGGC	1 cut(s)	512
NlaIII	CATG	5 cut(s)	233, 305, 397, 406, 442
NlaIV	GGNNCC	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	700
NspI	RCATGY	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	86
PdiI	GCCGGC	1 cut(s)	514
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	3 cut(s)	211, 508, 511
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Ppu21I	YACGTR	1 cut(s)	30
PsiI	TTATAA	1 cut(s)	714
Psp6I	CCWGG	2 cut(s)	236, 722
PspGI	CCWGG	2 cut(s)	236, 722
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	3 cut(s)	233, 431, 667
PsuI	RGATCY	2 cut(s)	136, 557
RseI	CAYNNNNRTG	1 cut(s)	536
SapI	GCTCTTC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	3 cut(s)	210, 507, 510
Sau3AI	GATC	3 cut(s)	136, 557, 582
Sau96I	GGNCC	3 cut(s)	233, 431, 667
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	3 cut(s)	238, 252, 724
SduI	GDGCHC	1 cut(s)	575
SetI	ASST	8 cut(s)	26, 32, 81, 156, 192, 211, 293, 436
SfaNI	GCATC	1 cut(s)	45
SfcI	CTRYAG	1 cut(s)	258
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	553
SmoI	CTYRAG	1 cut(s)	553
Sse9I	AATT	2 cut(s)	95, 462
SsiI	CCGC	3 cut(s)	219, 565, 569
SspI	AATATT	2 cut(s)	381, 426
StyD4I	CCNGG	3 cut(s)	236, 250, 722
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	550
TaiI	ACGT	2 cut(s)	32, 192
TaqI	TCGA	3 cut(s)	102, 126, 534
TasI	AATT	2 cut(s)	95, 462
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	3 cut(s)	209, 506, 509
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	5 cut(s)	73, 88, 355, 435, 464
TspGWI	ACGGA	2 cut(s)	97, 431
TspRI	CASTG	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	431
XagI	CCTNNNNNAGG	1 cut(s)	621
XapI	RAATTY	1 cut(s)	95
XceI	RCATGY	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.