Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041478.1

Orthogroup ID

OG0019810

Physical Location & Seq

Genomic Coordinates Reverse (-)

224 .. 798

Gene Structure 575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041478.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

acaggaggagaacgatttggctcaaaaggttactatattcaacccactgtattctcaaatgtgaaggatgacatgcggatagcaaaggatgagatctttggtccagtgcagactgtcttgaaatacaaggaacttgatgaggtgataaagagggcaaacaattcgcgctatggccttgctgcaggggtctttacacagaacatagatactgcaaacacattgacacgtgcattgcgggttggtagtgtatggatcaactgctatgatgtgtttgatgcttccattccttttggaggatacaagatgagtggaaatggaagagaaaagggcatttacggcctcaaaaattacttgcaagtcaaggctgttgtcacgcccctcaaaaatccagcatggctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004029 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0010035 GO:0010038 GO:0016491 GO:0016620 GO:0016903 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

133

Amino Acids

14.81

Weight (kDa)

9.46

Isoelectric Point (pI)

24.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019810)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g04130 pycom02g04150 pycom02g04170
rosa_chinensis	RchiOBHm_Chr3g0491931
rosa_multiflora	Rmu_sc0023176.1_g000001 Rmu_sc0041478.1_g000001
rosa_samantha	Rh3CG333900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	166
AciI	CCGC	2 cut(s)	76, 235
AclWI	GGATC	1 cut(s)	260
AcvI	CACGTG	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	224
AgsI	TTSAA	2 cut(s)	41, 121
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	2 cut(s)	172, 337
ApeKI	GCWGC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	101
BbrPI	CACGTG	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	352
BcgI	CGANNNNNNTGC	2 cut(s)	144, 178
BciVI	GTATCC	1 cut(s)	290
BfmI	CTRYAG	2 cut(s)	180, 398
BfuI	GTATCC	1 cut(s)	290
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmsI	GCATC	1 cut(s)	265
BsaAI	YACGTR	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	104
Bse3DI	GCAATG	1 cut(s)	230
BseGI	GGATG	2 cut(s)	73, 94
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMI	GCAATG	1 cut(s)	230
BseNI	ACTGG	1 cut(s)	104
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	166
BsgI	GTGCAG	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	174, 339
BslI	CCNNNNNNNGG	1 cut(s)	293
BsnI	GGCC	2 cut(s)	174, 339
Bsp143I	GATC	2 cut(s)	93, 252
BspACI	CCGC	2 cut(s)	76, 235
BspANI	GGCC	2 cut(s)	174, 339
BspFNI	CGCG	1 cut(s)	166
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	104
BssMI	GATC	2 cut(s)	93, 252
Bst4CI	ACNGT	2 cut(s)	49, 115
Bst6I	CTCTTC	1 cut(s)	313
BstBAI	YACGTR	1 cut(s)	227
BstENI	CCTNNNNNAGG	1 cut(s)	291
BstF5I	GGATG	2 cut(s)	73, 94
BstFNI	CGCG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	2 cut(s)	96, 255
BstMBI	GATC	2 cut(s)	93, 252
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNSI	RCATGY	1 cut(s)	76
BstSFI	CTRYAG	2 cut(s)	180, 398
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	2 cut(s)	174, 339
BtsCI	GGATG	2 cut(s)	73, 94
BtsIMutI	CAGTG	2 cut(s)	45, 111
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	101
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	2 cut(s)	73, 393
CviJI	RGCY	5 cut(s)	21, 174, 339, 365, 397
CviKI_1	RGCY	5 cut(s)	21, 174, 339, 365, 397
DpnI	GATC	2 cut(s)	95, 254
DpnII	GATC	2 cut(s)	93, 252
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	101
Eco72I	CACGTG	1 cut(s)	227
EcoNI	CCTNNNNNAGG	1 cut(s)	291
FaeI	CATG	2 cut(s)	76, 396
FaiI	YATR	7 cut(s)	36, 74, 171, 203, 250, 264, 394
FatI	CATG	2 cut(s)	72, 392
FauI	CCCGC	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	2 cut(s)	80, 101
Fsp4HI	GCNGC	1 cut(s)	180
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	174, 339
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	76, 396
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HphI	GGTGA	1 cut(s)	154
Hpy188III	TCNNGA	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	49, 115
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	5 cut(s)	109, 182, 212, 230, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	2 cut(s)	76, 396
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	93, 252
LpnPI	CCDG	2 cut(s)	117, 168
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	1 cut(s)	265
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	2 cut(s)	29, 370
MalI	GATC	2 cut(s)	95, 254
MboI	GATC	2 cut(s)	93, 252
MboII	GAAGA	1 cut(s)	330
MflI	RGATCY	1 cut(s)	93
MluCI	AATT	2 cut(s)	160, 346
MnlI	CCTC	5 cut(s)	133, 144, 287, 350, 389
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	336
NdeII	GATC	2 cut(s)	93, 252
NlaIII	CATG	2 cut(s)	76, 396
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	181
PmaCI	CACGTG	1 cut(s)	227
PmlI	CACGTG	1 cut(s)	227
Ppu21I	YACGTR	1 cut(s)	227
PspCI	CACGTG	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	101
PstI	CTGCAG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	93
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	2 cut(s)	93, 252
Sau96I	GGNCC	1 cut(s)	101
SetI	ASST	3 cut(s)	31, 144, 229
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	2 cut(s)	180, 398
SinI	GGWCC	1 cut(s)	101
Sse9I	AATT	2 cut(s)	160, 346
SsiI	CCGC	2 cut(s)	76, 235
TaaI	ACNGT	2 cut(s)	49, 115
TaiI	ACGT	1 cut(s)	229
TasI	AATT	2 cut(s)	160, 346
TscAI	CASTG	2 cut(s)	52, 111
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	370
TspRI	CASTG	2 cut(s)	52, 111
VpaK11BI	GGWCC	1 cut(s)	101
XagI	CCTNNNNNAGG	1 cut(s)	291
XceI	RCATGY	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.