pycom02g04150

Aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0019810
Physical Location & Seq
Forward (+)
2734601 .. 2734988
388 bp
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UTR
Exon/CDS
Intron
pycom02g04150.1

Sequence Viewer

Length: 294 bp
ATGGCGTTGATGAGGTTCAAGACAATCGAGGAGGCAATACAGAGAGCCAACAACACCAGATACGGCCTAGCAGCAGGGATCATAACCAAGGACTTGAATGTGGCCAACACCGTCTCAAGGTCAATTCGTGCGGGCATTATTTGGATCAACTGCTACTTTGCATTCGATCGAGACTGCCCTTACGGAGGGTATAAGATGAGTGGATTTGGAAGAGAATTTGGTATGCAGGGCCTCTATGAGTATCTCCATAGCAAATCTGTTGTCACTCCCATTTATAACTCCCCCTGGCTCTAA

Protein Analysis

98

Amino Acids

11.04

Weight (kDa)

9.26

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 2 - 87 9.9e-28 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019810)

Species Orthologous Gene IDs
pyrus_communis pycom02g04130 pycom02g04150 pycom02g04170
rosa_chinensis RchiOBHm_Chr3g0491931
rosa_multiflora Rmu_sc0023176.1_g000001 Rmu_sc0041478.1_g000001
rosa_samantha Rh3CG333900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 276
AciI CCGC 1 cut(s) 131
AclWI GGATC 2 cut(s) 86, 152
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 1 cut(s) 215
AfiI CCNNNNNNNGG 2 cut(s) 117, 185
AgsI TTSAA 2 cut(s) 19, 97
AjnI CCWGG 1 cut(s) 284
Alw26I GTCTC 2 cut(s) 118, 165
AlwI GGATC 2 cut(s) 86, 152
AoxI GGCC 3 cut(s) 64, 102, 229
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 215
ArsI GACNNNNNNTTYG 2 cut(s) 246, 278
AspS9I GGNCC 1 cut(s) 229
BalI TGGCCA 1 cut(s) 104
BbvI GCAGC 1 cut(s) 83
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 118, 165
BfaI CTAG 1 cut(s) 68
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 100
BsaJI CCNNGG 2 cut(s) 87, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 185
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 87, 284
BseLI CCNNNNNNNGG 2 cut(s) 117, 185
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 3 cut(s) 66, 104, 231
BsiEI CGRYCG 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 117, 185
BsmAI GTCTC 2 cut(s) 118, 165
BsmBI CGTCTC 1 cut(s) 118
BsmI GAATGC 1 cut(s) 161
BsnI GGCC 3 cut(s) 66, 104, 231
Bsp143I GATC 3 cut(s) 78, 144, 166
BspACI CCGC 1 cut(s) 131
BspANI GGCC 3 cut(s) 66, 104, 231
BspPI GGATC 2 cut(s) 86, 152
BssECI CCNNGG 2 cut(s) 87, 284
BssMI GATC 3 cut(s) 78, 144, 166
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 133
BstENI CCTNNNNNAGG 1 cut(s) 183
BstKTI GATC 3 cut(s) 81, 147, 169
BstMAI GTCTC 2 cut(s) 118, 165
BstMBI GATC 3 cut(s) 78, 144, 166
BstMCI CGRYCG 1 cut(s) 169
BstNI CCWGG 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 83
BsuRI GGCC 3 cut(s) 66, 104, 231
Cac8I GCNNGC 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 229
CviJI RGCY 5 cut(s) 47, 66, 104, 231, 289
CviKI_1 RGCY 5 cut(s) 47, 66, 104, 231, 289
DpnI GATC 3 cut(s) 80, 146, 168
DpnII GATC 3 cut(s) 78, 144, 166
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 87
EcoNI CCTNNNNNAGG 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 118
FaiI YATR 6 cut(s) 83, 192, 224, 237, 249, 276
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 68
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 3 cut(s) 66, 104, 231
Hpy188III TCNNGA 2 cut(s) 19, 170
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 161, 226
Kzo9I GATC 3 cut(s) 78, 144, 166
LpnPI CCDG 4 cut(s) 60, 70, 212, 271
Lsp1109I GCAGC 1 cut(s) 83
MaeI CTAG 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 262
MalI GATC 3 cut(s) 80, 146, 168
MboI GATC 3 cut(s) 78, 144, 166
MboII GAAGA 1 cut(s) 222
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 2 cut(s) 123, 215
MluNI TGGCCA 1 cut(s) 104
MnlI CCTC 5 cut(s) 6, 22, 25, 179, 242
Mox20I TGGCCA 1 cut(s) 104
MscI TGGCCA 1 cut(s) 104
Msp20I TGGCCA 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 286
Mva1269I GAATGC 1 cut(s) 161
MvaI CCWGG 1 cut(s) 286
NdeII GATC 3 cut(s) 78, 144, 166
NmuCI GTSAC 1 cut(s) 262
PctI GAATGC 1 cut(s) 161
PkrI GCNGC 1 cut(s) 73
Ple19I CGATCG 1 cut(s) 169
PsiI TTATAA 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspPI GGNCC 1 cut(s) 229
PvuI CGATCG 1 cut(s) 169
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 3 cut(s) 78, 144, 166
Sau96I GGNCC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 286
SetI ASST 2 cut(s) 17, 122
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 2 cut(s) 123, 215
SsiI CCGC 1 cut(s) 131
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 3 cut(s) 27, 165, 169
TasI AATT 2 cut(s) 123, 215
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 262
TspGWI ACGGA 1 cut(s) 198
XagI CCTNNNNNAGG 1 cut(s) 183
XapI RAATTY 1 cut(s) 215
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.