pycom02g05810

ATP synthase g subunit family protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
3907339 .. 3907646
308 bp
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UTR
Exon/CDS
Intron
pycom02g05810.2

Sequence Viewer

Length: 267 bp
ATGGCATCGAAGTTGCGTCAGTTGCAATCTAAGGCTAGTCAAGCAACACAATTGGTGTCCAAGTATGGAAGTACCTACTACAAGCAGTTGTTAGAGGAGAACAAGCAGTACATTCAACACCCACCAACCGTGGAGAAGTGCAACGAGTTGTCCAAGCAATTGCTTTACACTCGACTTGCTAGTTATTACTTGGCTGCGTCTGCTATGAGTTGTAGATTGAAGACCATTAAAGAAGTCTCATATATGTTGACTGAATGCTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

10.1

Weight (kDa)

9.32

Isoelectric Point (pI)

62.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020430)

Species Orthologous Gene IDs
pyrus_communis pycom02g05810
rosa_laevigata RLG00000016342
rosa_multiflora Rmu_sc0014880.1_g000001
rosa_roxburghii Rroxscaffold_2G00148740
rosa_samantha Rh2AG075700 Rh2DG074400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 73, 110
AgsI TTSAA 2 cut(s) 116, 220
Alw26I GTCTC 1 cut(s) 241
ApeKI GCWGC 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 2 cut(s) 36, 180
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 129
BseRI GAGGAG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 241
BsmI GAATGC 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 30
BstDSI CCRYGG 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 241
BstMWI GCNNNNNNNGC 3 cut(s) 22, 41, 200
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 129
CseI GACGC 2 cut(s) 5, 186
Csp6I GTAC 2 cut(s) 72, 109
CviJI RGCY 2 cut(s) 35, 194
CviKI_1 RGCY 2 cut(s) 35, 194
CviQI GTAC 2 cut(s) 72, 109
DdeI CTNAG 1 cut(s) 30
FaiI YATR 5 cut(s) 66, 206, 241, 243, 245
Fnu4HI GCNGC 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 2 cut(s) 36, 180
GluI GCNGC 1 cut(s) 195
HgaI GACGC 2 cut(s) 5, 186
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
Hpy166II GTNNAC 1 cut(s) 249
Hpy188III TCNNGA 1 cut(s) 264
Hpy8I GTNNAC 1 cut(s) 249
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 2 cut(s) 25, 141
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 41, 200
HpyF3I CTNAG 1 cut(s) 30
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 36, 180
MboII GAAGA 2 cut(s) 232, 252
MfeI CAATTG 2 cut(s) 50, 158
MluCI AATT 2 cut(s) 50, 158
MnlI CCTC 1 cut(s) 88
MseI TTAA 1 cut(s) 228
MunI CAATTG 2 cut(s) 50, 158
Mva1269I GAATGC 1 cut(s) 260
MwoI GCNNNNNNNGC 3 cut(s) 22, 41, 200
PctI GAATGC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 196
PsrI GAACNNNNNNTAC 2 cut(s) 92, 124
RsaI GTAC 2 cut(s) 73, 110
RsaNI GTAC 2 cut(s) 72, 109
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 1 cut(s) 195
SetI ASST 1 cut(s) 77
SfaNI GCATC 1 cut(s) 14
Sse9I AATT 2 cut(s) 50, 158
SspMI CTAG 2 cut(s) 36, 180
TaaI ACNGT 1 cut(s) 130
TaqI TCGA 2 cut(s) 8, 172
TasI AATT 2 cut(s) 50, 158
TatI WGTACW 1 cut(s) 108
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TseI GCWGC 1 cut(s) 194
XspI CTAG 2 cut(s) 36, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.