Rmu_sc0014880.1_g000001

Mitochondrial ATP synthase g subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014880.1
OG0020430
Physical Location & Seq
Reverse (-)
1 .. 3106
3106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014880.1_g000001.1.cds

Sequence Viewer

Length: 737 bp
atgaagcttgacagtgggaaaaattgtggtgaggcactagataataagttatccggagaggccttgaaggatttatctagtttcgtgaactccacgctacacaaattgtatcagaaacttgagggatataaatctgaacttatcgatcagccttactacatcagtaattggaaccctcttgagctcaatgaaaattcctcggacactgaaatgtttaaaggttttaatgaaggtcaatctactatggtcccagggcaagcttttcagtaccctaattttcaaagtggtactgggagtctgggactaatacccagtgattttggaaacgtggacaagttcggttcaatgggggagaagtcgaagaactacagtattaacaaaacttttgtcaacaacatttttgcttccattgattttaagaattgctccaacaatgttgcttcttttgttctacaaggacggaaagttctatacgcaagagcttcgcactctctctctctcttcggctttgaattcgattccgacgaaggattgacccgggcatcgatggccgcgatggcatcaaagttgcgtcagttgcagtccaaggcttgccaagcgactcaatttgtgtccaagcatggaactacctactacaaacagttgttagagcagaacaagcaatacattcaggagccggcaactgtggagaaatgcagtgagctgtcaaagcaattgttttacactcgacttgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 map00190 map01100 map04714
Pfam Domains
Protein Families
ATP-synt_G

Protein Analysis

245

Amino Acids

27.4

Weight (kDa)

7.6

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020430)

Species Orthologous Gene IDs
pyrus_communis pycom02g05810
rosa_laevigata RLG00000016342
rosa_multiflora Rmu_sc0014880.1_g000001
rosa_roxburghii Rroxscaffold_2G00148740
rosa_samantha Rh2AG075700 Rh2DG074400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 554
AccIII TCCGGA 1 cut(s) 53
AciI CCGC 1 cut(s) 552
AcoI YGGCCR 1 cut(s) 549
AcsI RAATTY 2 cut(s) 193, 512
AfaI GTAC 2 cut(s) 269, 289
AgsI TTSAA 4 cut(s) 67, 281, 345, 512
AjnI CCWGG 1 cut(s) 250
AloI GAACNNNNNNTCC 2 cut(s) 450, 482
AluBI AGCT 5 cut(s) 7, 184, 260, 482, 703
AluI AGCT 5 cut(s) 7, 184, 260, 482, 703
Alw21I GWGCWC 1 cut(s) 186
Ama87I CYCGRG 1 cut(s) 537
Aor13HI TCCGGA 1 cut(s) 53
AoxI GGCC 2 cut(s) 60, 549
ApoI RAATTY 2 cut(s) 193, 512
ArsI GACNNNNNNTTYG 2 cut(s) 372, 404
AspS9I GGNCC 1 cut(s) 247
AsuC2I CCSGG 2 cut(s) 538, 539
AsuHPI GGTGA 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 537
AvaII GGWCC 1 cut(s) 247
BanII GRGCYC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 186
BccI CCATC 2 cut(s) 541, 550
BcgI CGANNNNNNTGC 2 cut(s) 465, 499
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 2 cut(s) 538, 539
BfaI CTAG 3 cut(s) 38, 78, 735
BfmI CTRYAG 1 cut(s) 367
BglI GCCNNNNNGGC 1 cut(s) 557
BisI GCNGC 1 cut(s) 552
BlsI GCNGC 1 cut(s) 553
Bme1390I CCNGG 3 cut(s) 252, 538, 539
Bme18I GGWCC 1 cut(s) 247
BmeT110I CYCGRG 1 cut(s) 537
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 3 cut(s) 173, 249, 675
BmrFI CCNGG 3 cut(s) 252, 538, 539
BmrI ACTGGG 2 cut(s) 300, 306
BmsI GCATC 2 cut(s) 551, 569
BmuI ACTGGG 2 cut(s) 300, 306
BpuEI CTTGAG 2 cut(s) 140, 200
BpuMI CCSGG 2 cut(s) 538, 539
Bsa29I ATCGAT 2 cut(s) 144, 545
BsaBI GATNNNNATC 1 cut(s) 130
BsaJI CCNNGG 5 cut(s) 198, 250, 251, 537, 585
BsaWI WCCGGW 1 cut(s) 53
Bse118I RCCGGY 1 cut(s) 676
Bse1I ACTGG 2 cut(s) 295, 312
Bse8I GATNNNNATC 1 cut(s) 130
BseAI TCCGGA 1 cut(s) 53
BseBI CCWGG 1 cut(s) 252
BseCI ATCGAT 2 cut(s) 144, 545
BseDI CCNNGG 5 cut(s) 198, 250, 251, 537, 585
BseJI GATNNNNATC 1 cut(s) 130
BseNI ACTGG 2 cut(s) 295, 312
Bsh1236I CGCG 1 cut(s) 554
BshFI GGCC 2 cut(s) 62, 551
BshVI ATCGAT 2 cut(s) 144, 545
BsiHKAI GWGCWC 1 cut(s) 186
BsiHKCI CYCGRG 1 cut(s) 537
BsiSI CCGG 3 cut(s) 54, 538, 677
BslFI GGGAC 2 cut(s) 233, 315
BsmFI GGGAC 2 cut(s) 233, 315
BsnI GGCC 2 cut(s) 62, 551
BsoBI CYCGRG 1 cut(s) 537
Bsp1286I GDGCHC 1 cut(s) 186
Bsp13I TCCGGA 1 cut(s) 53
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 1 cut(s) 552
BspANI GGCC 2 cut(s) 62, 551
BspDI ATCGAT 2 cut(s) 144, 545
BspEI TCCGGA 1 cut(s) 53
BspFNI CGCG 1 cut(s) 554
BspLI GGNNCC 3 cut(s) 173, 249, 675
BsrFI RCCGGY 1 cut(s) 676
BsrI ACTGG 2 cut(s) 295, 312
BssAI RCCGGY 1 cut(s) 676
BssECI CCNNGG 5 cut(s) 198, 250, 251, 537, 585
BssMI GATC 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 585
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 4 cut(s) 14, 371, 642, 685
Bst6I CTCTTC 1 cut(s) 506
BstC8I GCNNGC 3 cut(s) 258, 592, 678
BstFNI CGCG 1 cut(s) 554
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 6 cut(s) 548, 557, 577, 596, 658, 709
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 3 cut(s) 250, 536, 537
BstSFI CTRYAG 1 cut(s) 367
BstUI CGCG 1 cut(s) 554
Bsu15I ATCGAT 2 cut(s) 144, 545
BsuRI GGCC 2 cut(s) 62, 551
BsuTUI ATCGAT 2 cut(s) 144, 545
BtgZI GCGATG 1 cut(s) 569
BtsI GCAGTG 1 cut(s) 703
BtsIMutI CAGTG 4 cut(s) 19, 204, 319, 703
Cac8I GCNNGC 3 cut(s) 258, 592, 678
Cfr10I RCCGGY 1 cut(s) 676
Cfr13I GGNCC 1 cut(s) 247
Cfr9I CCCGGG 1 cut(s) 537
ClaI ATCGAT 2 cut(s) 144, 545
CseI GACGC 1 cut(s) 560
Csp6I GTAC 2 cut(s) 268, 288
CviAII CATG 1 cut(s) 620
CviQI GTAC 2 cut(s) 268, 288
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
DraI TTTAAA 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 549
Eam1104I CTCTTC 1 cut(s) 506
EarI CTCTTC 1 cut(s) 506
Ecl136II GAGCTC 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 585
Eco147I AGGCCT 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 184
EcoRI GAATTC 1 cut(s) 512
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 585
EcoT38I GRGCYC 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 585
FaeI CATG 1 cut(s) 623
FaiI YATR 4 cut(s) 129, 245, 472, 621
FaqI GGGAC 2 cut(s) 233, 315
FatI CATG 1 cut(s) 619
Fnu4HI GCNGC 1 cut(s) 552
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 552
FspBI CTAG 3 cut(s) 38, 78, 735
GluI GCNGC 1 cut(s) 552
HaeIII GGCC 2 cut(s) 62, 551
HapII CCGG 3 cut(s) 54, 538, 677
HgaI GACGC 1 cut(s) 560
Hin1II CATG 1 cut(s) 623
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 2 cut(s) 5, 258
HinfI GANTC 3 cut(s) 295, 518, 601
HpaII CCGG 3 cut(s) 54, 538, 677
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 3 cut(s) 88, 331, 391
Hpy188I TCNGA 4 cut(s) 114, 136, 202, 523
Hpy188III TCNNGA 4 cut(s) 54, 85, 179, 671
Hpy8I GTNNAC 3 cut(s) 88, 331, 391
Hpy99I CGWCG 1 cut(s) 527
HpyAV CCTTC 3 cut(s) 61, 224, 521
HpyCH4III ACNGT 4 cut(s) 14, 371, 642, 685
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 2 cut(s) 580, 696
HpyF10VI GCNNNNNNNGC 6 cut(s) 548, 557, 577, 596, 658, 709
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 1 cut(s) 623
Kpn2I TCCGGA 1 cut(s) 53
KroI GCCGGC 1 cut(s) 676
KroNI GCCGGC 1 cut(s) 678
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 2 cut(s) 431, 673
LpnPI CCDG 9 cut(s) 67, 237, 264, 276, 284, 325, 551, 656, 690
LweI GCATC 2 cut(s) 551, 569
MaeI CTAG 3 cut(s) 38, 78, 735
MaeII ACGT 1 cut(s) 327
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 2 cut(s) 373, 493
MfeI CAATTG 1 cut(s) 713
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 9 cut(s) 22, 104, 166, 193, 274, 421, 512, 605, 713
MlyI GAGTC 2 cut(s) 304, 595
MmeI TCCRAC 2 cut(s) 453, 546
MnlI CCTC 5 cut(s) 25, 52, 115, 186, 208
MroI TCCGGA 1 cut(s) 53
MroNI GCCGGC 1 cut(s) 676
MseI TTAA 4 cut(s) 216, 225, 375, 417
MslI CAYNNNNRTG 1 cut(s) 209
MspI CCGG 3 cut(s) 54, 538, 677
MspR9I CCNGG 3 cut(s) 252, 538, 539
MunI CAATTG 1 cut(s) 713
MvaI CCWGG 1 cut(s) 252
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 6 cut(s) 548, 557, 577, 596, 658, 709
NaeI GCCGGC 1 cut(s) 678
NciI CCSGG 2 cut(s) 538, 539
NdeII GATC 1 cut(s) 145
NgoMIV GCCGGC 1 cut(s) 676
NlaIII CATG 1 cut(s) 623
NlaIV GGNNCC 3 cut(s) 173, 249, 675
PasI CCCWGGG 1 cut(s) 251
PceI AGGCCT 1 cut(s) 62
PcsI WCGNNNNNNNCGW 2 cut(s) 522, 551
PdiI GCCGGC 1 cut(s) 678
PfeI GAWTC 1 cut(s) 518
PkrI GCNGC 1 cut(s) 553
PleI GAGTC 2 cut(s) 303, 595
PpsI GAGTC 2 cut(s) 303, 595
Psp124BI GAGCTC 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 3 cut(s) 173, 249, 675
PspPI GGNCC 1 cut(s) 247
PsrI GAACNNNNNNTAC 2 cut(s) 647, 679
RsaI GTAC 2 cut(s) 269, 289
RsaNI GTAC 2 cut(s) 268, 288
RseI CAYNNNNRTG 1 cut(s) 209
SacI GAGCTC 1 cut(s) 186
SaqAI TTAA 4 cut(s) 216, 225, 375, 417
SatI GCNGC 1 cut(s) 552
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 1 cut(s) 247
SchI GAGTC 2 cut(s) 304, 595
ScrFI CCNGG 3 cut(s) 252, 538, 539
SduI GDGCHC 1 cut(s) 186
SetI ASST 9 cut(s) 9, 186, 223, 235, 262, 330, 484, 632, 705
SfaNI GCATC 2 cut(s) 551, 569
SfcI CTRYAG 1 cut(s) 367
SinI GGWCC 1 cut(s) 247
SmaI CCCGGG 1 cut(s) 539
SmiMI CAYNNNNRTG 1 cut(s) 209
SmlI CTYRAG 2 cut(s) 119, 179
SmoI CTYRAG 2 cut(s) 119, 179
Sse9I AATT 9 cut(s) 22, 104, 166, 193, 274, 421, 512, 605, 713
SseBI AGGCCT 1 cut(s) 62
SsiI CCGC 1 cut(s) 552
SspMI CTAG 3 cut(s) 38, 78, 735
SstI GAGCTC 1 cut(s) 186
StuI AGGCCT 1 cut(s) 62
StyD4I CCNGG 3 cut(s) 250, 536, 537
StyI CCWWGG 1 cut(s) 585
TaaI ACNGT 4 cut(s) 14, 371, 642, 685
TaiI ACGT 1 cut(s) 330
TaqI TCGA 5 cut(s) 144, 359, 516, 545, 727
TasI AATT 9 cut(s) 22, 104, 166, 193, 274, 421, 512, 605, 713
TauI GCSGC 1 cut(s) 554
TfiI GAWTC 1 cut(s) 518
Tru1I TTAA 4 cut(s) 216, 225, 375, 417
Tru9I TTAA 4 cut(s) 216, 225, 375, 417
TscAI CASTG 4 cut(s) 19, 211, 319, 703
TspDTI ATGAA 3 cut(s) 17, 204, 243
TspGWI ACGGA 1 cut(s) 475
TspMI CCCGGG 1 cut(s) 537
TspRI CASTG 4 cut(s) 19, 211, 319, 703
VpaK11BI GGWCC 1 cut(s) 247
XapI RAATTY 2 cut(s) 193, 512
XmaI CCCGGG 1 cut(s) 537
XspI CTAG 3 cut(s) 38, 78, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.