pycom02g10970

expansin-A23-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
7754316 .. 7754816
501 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g10970.1

Sequence Viewer

Length: 501 bp
ATGGCCAAACTTGCGGGGCTTGTTTCGAGGTTACGTGAATGGATCGATCCAAAATGGTGCCTACCAGACACCATCAAAGTAACAGCAACCAACTTGTGTCCTCCATCCAAAAATCCTAGTGCAAATTGGTGCAATCCTCCTTCAAAACACTTCGAGTTGTCCCAACCAATGTTTCTAAAGATTGCAAAATTCGTGGCCGCCGGAATAGTCCCCATTCGCTTTCAACGAGTGCCATGCTTTAAGAGGGGAGGGATCAAGTTCTATCTCGGTGGGAGCCCTAATTTCCTGCTTGCGTTGGTATGCAACGTTGGAGGGGCTGGTGAAGTGGTAGATGTAAAAGTGAAAGGCTTGAGCACTGGTTGGATACAAATGACGCATAACTGGGGACAAAACTGGCAGACTGGAGGAGGTTTGGAAGGAAAAAGTTTGTCTTTCCAAGTAACTACTAGTGATAGAAGGGTGGTGGAGTCTCTCAACTTTGTGCCTGCCAATTGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

167

Amino Acids

18.3

Weight (kDa)

9.75

Isoelectric Point (pI)

22.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 18 - 74 5.3e-09 Lytic transglycolase
Expansin_C PF01357 85 - 162 2.2e-23 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020379)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 57
AciI CCGC 2 cut(s) 14, 198
AclI AACGTT 1 cut(s) 306
AclWI GGATC 3 cut(s) 41, 50, 260
AcoI YGGCCR 2 cut(s) 3, 195
AcsI RAATTY 1 cut(s) 188
AgsI TTSAA 2 cut(s) 144, 224
AhlI ACTAGT 1 cut(s) 446
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
Alw21I GWGCWC 1 cut(s) 356
Alw26I GTCTC 1 cut(s) 474
AlwI GGATC 3 cut(s) 41, 50, 260
AoxI GGCC 2 cut(s) 3, 195
ApoI RAATTY 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 332
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 57
BanII GRGCYC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 356
BccI CCATC 2 cut(s) 80, 112
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BciVI GTATCC 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 474
BcuI ACTAGT 1 cut(s) 446
BfaI CTAG 2 cut(s) 117, 447
BfuI GTATCC 1 cut(s) 357
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 59, 275
BmrI ACTGGG 1 cut(s) 391
BmuI ACTGGG 1 cut(s) 391
BpmI CTGGAG 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 370
Bsa29I ATCGAT 1 cut(s) 45
BsaAI YACGTR 1 cut(s) 35
Bse1I ACTGG 4 cut(s) 361, 386, 398, 406
BseCI ATCGAT 1 cut(s) 45
BseGI GGATG 1 cut(s) 104
BseNI ACTGG 4 cut(s) 361, 386, 398, 406
BseRI GAGGAG 1 cut(s) 420
BshFI GGCC 2 cut(s) 5, 197
BshNI GGYRCC 1 cut(s) 57
BshVI ATCGAT 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 356
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 3 cut(s) 145, 194, 399
BsmAI GTCTC 1 cut(s) 474
BsmFI GGGAC 3 cut(s) 145, 194, 399
BsnI GGCC 2 cut(s) 5, 197
Bsp1286I GDGCHC 2 cut(s) 278, 356
Bsp143I GATC 3 cut(s) 42, 46, 252
BspACI CCGC 2 cut(s) 14, 198
BspANI GGCC 2 cut(s) 5, 197
BspDI ATCGAT 1 cut(s) 45
BspLI GGNNCC 2 cut(s) 59, 275
BspPI GGATC 3 cut(s) 41, 50, 260
BspT107I GGYRCC 1 cut(s) 57
BsrI ACTGG 4 cut(s) 361, 386, 398, 406
BssMI GATC 3 cut(s) 42, 46, 252
BstBAI YACGTR 1 cut(s) 35
BstC8I GCNNGC 2 cut(s) 291, 486
BstF5I GGATG 1 cut(s) 104
BstKTI GATC 3 cut(s) 45, 49, 255
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 3 cut(s) 42, 46, 252
BstMWI GCNNNNNNNGC 1 cut(s) 11
Bsu15I ATCGAT 1 cut(s) 45
BsuI GTATCC 1 cut(s) 357
BsuRI GGCC 2 cut(s) 5, 197
BsuTUI ATCGAT 1 cut(s) 45
BtsCI GGATG 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 2 cut(s) 291, 486
ClaI ATCGAT 1 cut(s) 45
CseI GACGC 1 cut(s) 382
CspCI CAANNNNNGTGG 2 cut(s) 174, 209
CviAII CATG 1 cut(s) 234
CviJI RGCY 6 cut(s) 5, 19, 197, 276, 317, 348
CviKI_1 RGCY 6 cut(s) 5, 19, 197, 276, 317, 348
DpnI GATC 3 cut(s) 44, 48, 254
DpnII GATC 3 cut(s) 42, 46, 252
EaeI YGGCCR 2 cut(s) 3, 195
Eco24I GRGCYC 1 cut(s) 278
EcoT38I GRGCYC 1 cut(s) 278
FaeI CATG 1 cut(s) 237
FaiI YATR 3 cut(s) 235, 301, 378
FalI AAGNNNNNCTT 2 cut(s) 415, 447
FaqI GGGAC 3 cut(s) 145, 194, 399
FatI CATG 1 cut(s) 233
FauI CCCGC 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 1 cut(s) 91
FriOI GRGCYC 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 2 cut(s) 117, 447
GluI GCNGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 423
HaeIII GGCC 2 cut(s) 5, 197
HapII CCGG 1 cut(s) 201
HgaI GACGC 1 cut(s) 382
Hin1II CATG 1 cut(s) 237
HinfI GANTC 1 cut(s) 467
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 332
HpyAV CCTTC 3 cut(s) 150, 410, 450
HpyCH4IV ACGT 2 cut(s) 34, 306
HpyCH4V TGCA 4 cut(s) 122, 132, 185, 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 2 cut(s) 34, 306
Hsp92II CATG 1 cut(s) 237
Kzo9I GATC 3 cut(s) 42, 46, 252
LmnI GCTCC 1 cut(s) 273
LpnPI CCDG 8 cut(s) 78, 214, 299, 303, 342, 367, 379, 387
MaeI CTAG 2 cut(s) 117, 447
MaeII ACGT 2 cut(s) 34, 306
MaeIII GTNAC 3 cut(s) 30, 79, 439
MalI GATC 3 cut(s) 44, 48, 254
MboI GATC 3 cut(s) 42, 46, 252
MfeI CAATTG 1 cut(s) 490
MhlI GDGCHC 2 cut(s) 278, 356
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 124, 188, 280, 490
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 2 cut(s) 289, 341
MnlI CCTC 8 cut(s) 21, 111, 147, 237, 242, 305, 398, 401
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 240
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 201
MunI CAATTG 1 cut(s) 490
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 3 cut(s) 42, 46, 252
NlaIII CATG 1 cut(s) 237
NlaIV GGNNCC 2 cut(s) 59, 275
PcsI WCGNNNNNNNCGW 1 cut(s) 223
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 475
Ppu21I YACGTR 1 cut(s) 35
Psp1406I AACGTT 1 cut(s) 306
PspN4I GGNNCC 2 cut(s) 59, 275
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 3 cut(s) 42, 46, 252
SchI GAGTC 1 cut(s) 476
SduI GDGCHC 2 cut(s) 278, 356
SetI ASST 4 cut(s) 32, 37, 309, 412
SmlI CTYRAG 1 cut(s) 349
SmoI CTYRAG 1 cut(s) 349
SpeI ACTAGT 1 cut(s) 446
Sse9I AATT 4 cut(s) 124, 188, 280, 490
SsiI CCGC 2 cut(s) 14, 198
SspMI CTAG 2 cut(s) 117, 447
TaiI ACGT 2 cut(s) 37, 309
TaqI TCGA 3 cut(s) 26, 45, 153
TasI AATT 4 cut(s) 124, 188, 280, 490
TauI GCSGC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 1 cut(s) 361
TspRI CASTG 1 cut(s) 361
XapI RAATTY 1 cut(s) 188
XspI CTAG 2 cut(s) 117, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.