Rmu_co8391917.1_g000001

atexp4,atexpa4,athexp alpha 1.6,expa4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8391917.1
OG0020379
Physical Location & Seq
Forward (+)
1 .. 474
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8391917.1_g000001.1.cds

Sequence Viewer

Length: 310 bp
ggtgccatgccgcaagcgcggagggatcaggttcaccatcaacggcttccgttacttcaacttggttctggtctccaacgtcgcgggtgcaggggatatcgtgagggtgagcgtgaaagggtccaggactggctggatgagcctgagccgcaactggggtcagaactggcagtcgaactcggttctggttggtcagtcactctccttcagggtcacaggcagtgaccgacgctcctccacctcgtggaacatagtcccagctaactggcagttcggtcagactttcaccggaaagaatttccgagtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

102

Amino Acids

11.42

Weight (kDa)

12.0

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020379)

Species Orthologous Gene IDs
malus_domestica MD02G1138400.v1.1
pyrus_communis pycom02g10970
rosa_chinensis RchiOBHm_Chr5g0061561
rosa_multiflora Rmu_co8111106.1_g000001 Rmu_co8391917.1_g000001 Rmu_sc0038331.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 2
AccB7I CCANNNNNTGG 1 cut(s) 244
AccII CGCG 2 cut(s) 19, 84
AciI CCGC 4 cut(s) 11, 19, 84, 149
AclWI GGATC 1 cut(s) 33
AcsI RAATTY 1 cut(s) 296
AcuI CTGAAG 1 cut(s) 191
AdeI CACNNNGTG 1 cut(s) 244
AfiI CCNNNNNNNGG 2 cut(s) 155, 244
AgsI TTSAA 1 cut(s) 59
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 1 cut(s) 33
ApoI RAATTY 1 cut(s) 296
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 3 cut(s) 26, 119, 278
AvaII GGWCC 1 cut(s) 121
BanI GGYRCC 1 cut(s) 2
BauI CACGAG 1 cut(s) 242
BccI CCATC 1 cut(s) 45
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 77
BisI GCNGC 2 cut(s) 11, 149
BlsI GCNGC 2 cut(s) 12, 150
Bme1390I CCNGG 1 cut(s) 125
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 2 cut(s) 4, 122
BmrFI CCNGG 1 cut(s) 125
BmrI ACTGGG 1 cut(s) 164
BmuI ACTGGG 1 cut(s) 164
Bpu10I CCTNAGC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 77
BsaWI WCCGGW 1 cut(s) 288
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 244
Bse1I ACTGG 4 cut(s) 134, 159, 171, 270
BseBI CCWGG 1 cut(s) 125
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 155, 244
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 4 cut(s) 134, 159, 171, 270
BseRI GAGGAG 1 cut(s) 224
BseYI CCCAGC 1 cut(s) 257
BsgI GTGCAG 1 cut(s) 109
Bsh1236I CGCG 2 cut(s) 19, 84
BshNI GGYRCC 1 cut(s) 2
BsiSI CCGG 1 cut(s) 289
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 2 cut(s) 155, 244
BsmAI GTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 240
Bso31I GGTCTC 1 cut(s) 77
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 4 cut(s) 11, 19, 84, 149
BspCNI CTCAG 1 cut(s) 136
BspFNI CGCG 2 cut(s) 19, 84
BspLI GGNNCC 2 cut(s) 4, 122
BspPI GGATC 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 2
BspTNI GGTCTC 1 cut(s) 77
BsrI ACTGG 4 cut(s) 134, 159, 171, 270
BssMI GATC 1 cut(s) 25
BssSI CACGAG 1 cut(s) 242
Bst2BI CACGAG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 142
BstFNI CGCG 2 cut(s) 19, 84
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 3 cut(s) 16, 139, 148
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 123
BstUI CGCG 2 cut(s) 19, 84
BstXI CCANNNNNNTGG 1 cut(s) 265
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 227
Cac8I GCNNGC 1 cut(s) 15
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 121
CseI GACGC 1 cut(s) 238
CviAII CATG 1 cut(s) 7
CviJI RGCY 5 cut(s) 46, 133, 142, 148, 261
CviKI_1 RGCY 5 cut(s) 46, 133, 142, 148, 261
DdeI CTNAG 1 cut(s) 144
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
DraIII CACNNNGTG 1 cut(s) 244
Eco31I GGTCTC 1 cut(s) 77
Eco32I GATATC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 123
EcoRV GATATC 1 cut(s) 98
FaeI CATG 1 cut(s) 10
FaiI YATR 2 cut(s) 8, 252
FaqI GGGAC 1 cut(s) 240
FatI CATG 1 cut(s) 6
FauI CCCGC 1 cut(s) 77
Fnu4HI GCNGC 2 cut(s) 11, 149
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 2 cut(s) 11, 149
GlaI GCGC 1 cut(s) 18
GluI GCNGC 2 cut(s) 11, 149
GsaI CCCAGC 1 cut(s) 261
HapII CCGG 1 cut(s) 289
HgaI GACGC 1 cut(s) 238
HhaI GCGC 1 cut(s) 19
Hin1II CATG 1 cut(s) 10
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HpaII CCGG 1 cut(s) 289
HphI GGTGA 3 cut(s) 26, 119, 278
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 3 cut(s) 163, 280, 303
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 1 cut(s) 34
Hpy99I CGWCG 2 cut(s) 84, 232
HpyAV CCTTC 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 90
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 139, 148
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 1 cut(s) 10
HspAI GCGC 1 cut(s) 17
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 237
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 4 cut(s) 51, 196, 212, 222
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MluCI AATT 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 4 cut(s) 15, 97, 245, 251
MspI CCGG 1 cut(s) 289
MspR9I CCNGG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 2 cut(s) 19, 84
MwoI GCNNNNNNNGC 3 cut(s) 16, 139, 148
NdeII GATC 1 cut(s) 25
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 2 cut(s) 4, 122
NmuCI GTSAC 3 cut(s) 196, 212, 222
PflMI CCANNNNNTGG 1 cut(s) 244
PfoI TCCNGGA 1 cut(s) 123
PkrI GCNGC 2 cut(s) 12, 150
Psp6I CCWGG 1 cut(s) 123
PspFI CCCAGC 1 cut(s) 257
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 4, 122
PspPI GGNCC 1 cut(s) 121
SatI GCNGC 2 cut(s) 11, 149
Sau3AI GATC 1 cut(s) 25
Sau96I GGNCC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 125
SetI ASST 4 cut(s) 33, 82, 243, 263
SinI GGWCC 1 cut(s) 121
Sse9I AATT 1 cut(s) 296
SsiI CCGC 4 cut(s) 11, 19, 84, 149
StyD4I CCNGG 1 cut(s) 123
TaiI ACGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 174
TaqII GACCGA 2 cut(s) 241, 264
TasI AATT 1 cut(s) 296
TauI GCSGC 2 cut(s) 13, 151
TscAI CASTG 1 cut(s) 227
TseFI GTSAC 3 cut(s) 196, 212, 222
Tsp45I GTSAC 3 cut(s) 196, 212, 222
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 1 cut(s) 227
Van91I CCANNNNNTGG 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.