RchiOBHm_Chr5g0061561

expansin-A23-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0020379
Physical Location & Seq
Forward (+)
67059713 .. 67060012
300 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33793

Sequence Viewer

Length: 300 bp
ATGGTACCAGTTATGTATCACAGAGTCCCGTGTGCTAAGTATGGAGGGGTTAAGTTCCAAATAGTGAAGGGGGACTCTAGTGTGATGCGTGTGTTATTGTACAACGTTGCCGGTGCTGGTGATGTTTCTGATGTCAAAATTAAGGGCTCTACTACTTCCGGTTGGATTCAGATGACACGAATTCAGGGCCAAACCTCGCAGATCGGAAACAAATTACAAGGCCAAAGCTTGTCGTTCCTAGTTACCACTAGTGATGGGAAGATGGTGGAGTTTGATAACATTGTGTCCGAAAATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

99

Amino Acids

10.82

Weight (kDa)

9.21

Isoelectric Point (pI)

34.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Expansin_C PF01357 17 - 95 1.3e-18 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020379)

Species Orthologous Gene IDs
malus_domestica MD02G1138400.v1.1
pyrus_communis pycom02g10970
rosa_chinensis RchiOBHm_Chr5g0061561
rosa_multiflora Rmu_co8111106.1_g000001 Rmu_co8391917.1_g000001 Rmu_sc0038331.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AclI AACGTT 1 cut(s) 105
AcsI RAATTY 1 cut(s) 180
AfaI GTAC 2 cut(s) 6, 101
AfiI CCNNNNNNNGG 1 cut(s) 294
AhlI ACTAGT 1 cut(s) 248
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
AoxI GGCC 2 cut(s) 187, 220
ApoI RAATTY 1 cut(s) 180
Asp718I GGTACC 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 131
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 149
BccI CCATC 2 cut(s) 248, 256
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 3 cut(s) 78, 239, 249
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 158
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 8
BshFI GGCC 2 cut(s) 189, 222
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 2 cut(s) 111, 159
BslFI GGGAC 2 cut(s) 11, 86
BslI CCNNNNNNNGG 1 cut(s) 294
BsmFI GGGAC 2 cut(s) 11, 86
BsnI GGCC 2 cut(s) 189, 222
Bsp1286I GDGCHC 1 cut(s) 149
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 1 cut(s) 201
BspANI GGCC 2 cut(s) 189, 222
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 110
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 110
BssMI GATC 1 cut(s) 201
BstAUI TGTACA 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 36
BstKTI GATC 1 cut(s) 204
BstMBI GATC 1 cut(s) 201
BsuRI GGCC 2 cut(s) 189, 222
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 187
Csp6I GTAC 2 cut(s) 5, 100
CviJI RGCY 4 cut(s) 147, 189, 222, 228
CviKI_1 RGCY 4 cut(s) 147, 189, 222, 228
CviQI GTAC 2 cut(s) 5, 100
DdeI CTNAG 1 cut(s) 36
DpnI GATC 1 cut(s) 203
DpnII GATC 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 149
EcoRI GAATTC 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 149
FaiI YATR 2 cut(s) 14, 42
FaqI GGGAC 2 cut(s) 11, 86
FriOI GRGCYC 1 cut(s) 149
FspBI CTAG 3 cut(s) 78, 239, 249
HaeIII GGCC 2 cut(s) 189, 222
HapII CCGG 2 cut(s) 111, 159
HindIII AAGCTT 1 cut(s) 226
HinfI GANTC 3 cut(s) 24, 74, 166
HpaII CCGG 2 cut(s) 111, 159
HphI GGTGA 1 cut(s) 131
Hpy188I TCNGA 4 cut(s) 130, 171, 206, 289
HpyAV CCTTC 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 105
HpyF3I CTNAG 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 105
KpnI GGTACC 1 cut(s) 8
Kzo9I GATC 1 cut(s) 201
LpnPI CCDG 5 cut(s) 21, 102, 124, 170, 172
LweI GCATC 1 cut(s) 75
MaeI CTAG 3 cut(s) 78, 239, 249
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 241
MalI GATC 1 cut(s) 203
MboI GATC 1 cut(s) 201
MboII GAAGA 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 4 cut(s) 138, 180, 212, 292
MlyI GAGTC 2 cut(s) 33, 68
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 2 cut(s) 38, 205
MseI TTAA 2 cut(s) 51, 141
MspI CCGG 2 cut(s) 111, 159
NdeII GATC 1 cut(s) 201
NlaIV GGNNCC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 166
PleI GAGTC 2 cut(s) 32, 68
PpsI GAGTC 2 cut(s) 32, 68
Psp1406I AACGTT 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 187
RsaI GTAC 2 cut(s) 6, 101
RsaNI GTAC 2 cut(s) 5, 100
SaqAI TTAA 2 cut(s) 51, 141
Sau3AI GATC 1 cut(s) 201
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 2 cut(s) 33, 68
SduI GDGCHC 1 cut(s) 149
SetI ASST 3 cut(s) 108, 197, 230
SfaNI GCATC 1 cut(s) 75
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 4 cut(s) 138, 180, 212, 292
SspMI CTAG 3 cut(s) 78, 239, 249
TaiI ACGT 1 cut(s) 108
TasI AATT 4 cut(s) 138, 180, 212, 292
TatI WGTACW 1 cut(s) 99
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 2 cut(s) 51, 141
Tru9I TTAA 2 cut(s) 51, 141
XapI RAATTY 1 cut(s) 180
XspI CTAG 3 cut(s) 78, 239, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.