pycom02g13060

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
9641817 .. 9642014
198 bp
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UTR
Exon/CDS
Intron
pycom02g13060.1

Sequence Viewer

Length: 198 bp
ATGGTATCGGGGTATGCGAAAGTGGGGCAGCTTGGTGAGGCTAGGAAATTGTTTGATGAAAAGCCTCAGAGAGAGAATCTTTCTTGGACTGTGATGATATCGGGGTGTGTTTGCCATGATTGTCCTAAGGAGGCTTTGCGGTTGTATAGGATGACGCAGAGGAGTGATAATTTGAAATCTAATAAGTTCAGTGTCTAG

Protein Analysis

66

Amino Acids

7.45

Weight (kDa)

9.22

Isoelectric Point (pI)

23.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021254)

Species Orthologous Gene IDs
pyrus_communis pycom02g13060
rosa_laevigata RLG00000001550
rosa_roxburghii Rroxscaffold_7G00195240
rosa_samantha Rh1DG155100 Rh2CG444000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 139
AgsI TTSAA 1 cut(s) 175
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 47
AxyI CCTNAGG 1 cut(s) 126
BbvI GCAGC 1 cut(s) 40
BfaI CTAG 2 cut(s) 42, 196
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bse21I CCTNAGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 80
BseRI GAGGAG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 40
BspACI CCGC 1 cut(s) 139
BspCNI CTCAG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 91
BstDEI CTNAG 2 cut(s) 66, 126
BstF5I GGATG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 40
Bsu36I CCTNAGG 1 cut(s) 126
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 196
CseI GACGC 1 cut(s) 163
CviAII CATG 1 cut(s) 116
CviJI RGCY 4 cut(s) 31, 41, 64, 134
CviKI_1 RGCY 4 cut(s) 31, 41, 64, 134
DdeI CTNAG 2 cut(s) 66, 126
Eco32I GATATC 1 cut(s) 99
Eco81I CCTNAGG 1 cut(s) 126
EcoRV GATATC 1 cut(s) 99
FaeI CATG 1 cut(s) 119
FaiI YATR 3 cut(s) 15, 117, 147
FatI CATG 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 2 cut(s) 42, 196
GluI GCNGC 1 cut(s) 29
HgaI GACGC 1 cut(s) 163
Hin1II CATG 1 cut(s) 119
HinfI GANTC 1 cut(s) 76
HphI GGTGA 1 cut(s) 47
Hpy188I TCNGA 1 cut(s) 69
HpyCH4III ACNGT 1 cut(s) 91
HpyF3I CTNAG 2 cut(s) 66, 126
Hsp92II CATG 1 cut(s) 119
Lsp1109I GCAGC 1 cut(s) 40
MaeI CTAG 2 cut(s) 42, 196
MluCI AATT 2 cut(s) 47, 169
MnlI CCTC 4 cut(s) 31, 75, 124, 153
NlaIII CATG 1 cut(s) 119
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 1 cut(s) 30
SatI GCNGC 1 cut(s) 29
SetI ASST 1 cut(s) 33
SgeI CNNG 6 cut(s) 21, 44, 54, 96, 114, 128
Sse9I AATT 2 cut(s) 47, 169
SsiI CCGC 1 cut(s) 139
SspMI CTAG 2 cut(s) 42, 196
TaaI ACNGT 1 cut(s) 91
TasI AATT 2 cut(s) 47, 169
TfiI GAWTC 1 cut(s) 76
TscAI CASTG 1 cut(s) 196
TseI GCWGC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 72
TspRI CASTG 1 cut(s) 196
XspI CTAG 2 cut(s) 42, 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.