Rh2CG444000

EamA-like transporter family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
60145019 .. 60148689
3671 bp
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UTR
Exon/CDS
Intron
Rh2CG444000.1

Sequence Viewer

Length: 411 bp
ATGAATGTAATCACGCGCGAGTCGTCGTCAGCATCAGAGACTGATGGTGGCGCTGTCAAGAAGGAGAAGTCCCCTCTATTAACGCAGGCTGAGAAACCCAAAATCAACATATTCACTCTCTCCTATACCCAGAGAAACCTAGGGCATAGGCTTGATGATGCCCTGAAGCTGTTCTACAAAATGCCTGAGAGAGATGTGGTCTCTTGGAATGCGAAGATCAAAAAAGTGTTTGGATTGTGGGGATTTGGAGTGGAAGATGTTAAGAAGTTGTTTGAGGTGATGTCTGGGAAGAATGCCATTTCGTGGACTTCCATGATTGCTGGGCTTGACCAGAATGAGAGGAGTGAGGAAGCTTTGGTAGTTTTCGGGGATAGAAATTTTGAGACTACAAGCAGAAAACTTAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

15.4

Weight (kDa)

9.33

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021254)

Species Orthologous Gene IDs
pyrus_communis pycom02g13060
rosa_laevigata RLG00000001550
rosa_roxburghii Rroxscaffold_7G00195240
rosa_samantha Rh1DG155100 Rh2CG444000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 303
AccII CGCG 2 cut(s) 16, 18
AcsI RAATTY 1 cut(s) 376
AcuI CTGAAG 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 303
AflII CTTAAG 1 cut(s) 401
AluBI AGCT 2 cut(s) 169, 353
AluI AGCT 2 cut(s) 169, 353
Alw26I GTCTC 3 cut(s) 32, 205, 377
AlwNI CAGNNNCTG 1 cut(s) 41
ApoI RAATTY 1 cut(s) 376
Asp700I GAANNNNTTC 1 cut(s) 170
AspA2I CCTAGG 1 cut(s) 139
AspLEI GCGC 2 cut(s) 18, 53
AsuHPI GGTGA 1 cut(s) 289
AvrII CCTAGG 1 cut(s) 139
BarI GAAGNNNNNNTAC 2 cut(s) 158, 190
BccI CCATC 1 cut(s) 38
BcoDI GTCTC 3 cut(s) 32, 205, 377
BfaI CTAG 1 cut(s) 140
BfoI RGCGCY 1 cut(s) 54
BfrI CTTAAG 1 cut(s) 401
BlnI CCTAGG 1 cut(s) 139
BmsI GCATC 2 cut(s) 41, 148
BsaI GGTCTC 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 303
BseMII CTCAG 2 cut(s) 81, 177
BseRI GAGGAG 1 cut(s) 355
BseYI CCCAGC 1 cut(s) 320
Bsh1236I CGCG 2 cut(s) 16, 18
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 303
BsmAI GTCTC 3 cut(s) 32, 205, 377
BsmFI GGGAC 1 cut(s) 55
BsmI GAATGC 2 cut(s) 214, 298
Bso31I GGTCTC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 216
BspCNI CTCAG 2 cut(s) 82, 178
BspFNI CGCG 2 cut(s) 16, 18
BspTI CTTAAG 1 cut(s) 401
BspTNI GGTCTC 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 139
BstAFI CTTAAG 1 cut(s) 401
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 2 cut(s) 90, 186
BstFNI CGCG 2 cut(s) 16, 18
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 2 cut(s) 18, 53
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 3 cut(s) 32, 205, 377
BstMBI GATC 1 cut(s) 216
BstUI CGCG 2 cut(s) 16, 18
Cac8I GCNNGC 1 cut(s) 87
CaiI CAGNNNCTG 1 cut(s) 41
CfoI GCGC 2 cut(s) 18, 53
CviAII CATG 1 cut(s) 313
CviJI RGCY 5 cut(s) 89, 151, 169, 325, 353
CviKI_1 RGCY 5 cut(s) 89, 151, 169, 325, 353
DdeI CTNAG 2 cut(s) 90, 186
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 139
Eco31I GGTCTC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 1 cut(s) 316
FaiI YATR 4 cut(s) 110, 126, 147, 314
FaqI GGGAC 1 cut(s) 55
FatI CATG 1 cut(s) 312
FspBI CTAG 1 cut(s) 140
GlaI GCGC 2 cut(s) 17, 52
GsaI CCCAGC 1 cut(s) 324
HaeII RGCGCY 1 cut(s) 54
HhaI GCGC 2 cut(s) 18, 53
Hin1II CATG 1 cut(s) 316
Hin6I GCGC 2 cut(s) 16, 51
HinP1I GCGC 2 cut(s) 16, 51
HindIII AAGCTT 1 cut(s) 351
HinfI GANTC 1 cut(s) 20
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 58
Hpy8I GTNNAC 1 cut(s) 306
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 1 cut(s) 55
HpyF3I CTNAG 2 cut(s) 90, 186
Hsp92II CATG 1 cut(s) 316
HspAI GCGC 2 cut(s) 16, 51
Kzo9I GATC 1 cut(s) 216
LpnPI CCDG 7 cut(s) 71, 143, 176, 198, 270, 306, 344
LweI GCATC 2 cut(s) 41, 148
MaeI CTAG 1 cut(s) 140
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 3 cut(s) 226, 266, 301
MluCI AATT 1 cut(s) 376
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 4 cut(s) 84, 268, 333, 340
MroXI GAANNNNTTC 1 cut(s) 170
MseI TTAA 3 cut(s) 80, 261, 402
MspCI CTTAAG 1 cut(s) 401
Mva1269I GAATGC 2 cut(s) 214, 298
MvnI CGCG 2 cut(s) 16, 18
NdeII GATC 1 cut(s) 216
NlaIII CATG 1 cut(s) 316
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 2 cut(s) 214, 298
PdmI GAANNNNTTC 1 cut(s) 170
PflMI CCANNNNNTGG 1 cut(s) 303
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PspFI CCCAGC 1 cut(s) 320
PstNI CAGNNNCTG 1 cut(s) 41
SaqAI TTAA 3 cut(s) 80, 261, 402
Sau3AI GATC 1 cut(s) 216
SchI GAGTC 1 cut(s) 29
SetI ASST 4 cut(s) 141, 171, 279, 355
SfaNI GCATC 2 cut(s) 41, 148
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 1 cut(s) 376
SspMI CTAG 1 cut(s) 140
StyI CCWWGG 1 cut(s) 139
TasI AATT 1 cut(s) 376
Tru1I TTAA 3 cut(s) 80, 261, 402
Tru9I TTAA 3 cut(s) 80, 261, 402
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 303
Vha464I CTTAAG 1 cut(s) 401
XapI RAATTY 1 cut(s) 376
XmaJI CCTAGG 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.