Rh1DG155100

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
32306341 .. 32311416
5076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG155100.1

Sequence Viewer

Length: 303 bp
ATGGTTACTGGCTTTATTCAGAATGGGGATTTAAAGCGGGCATGGAACTTGTTTATGAAAATGCCACAGAAGAATGCTATGTCCTGGACTACAATGATCACTGGGTGTGTACAAGATGGAAAAAATGAAGATGCATTGATGATTTTCTCAAAAATGGTGGCAGATGATGGGGTCAAACTTAATCAGGAACTTTTCCTGCCATTCGACACCGTGGTTTGGCCTTCACCTAAACTTGTCGACAAAGCCAACCCTACTCGTTACAGGGACACAGACTTTGCCAATTTTCTTCAGTATATTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

11.47

Weight (kDa)

6.12

Isoelectric Point (pI)

29.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 25 - 54 4.9e-06 PPR repeat family
PPR PF01535 28 - 54 8.5e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021254)

Species Orthologous Gene IDs
pyrus_communis pycom02g13060
rosa_laevigata RLG00000001550
rosa_roxburghii Rroxscaffold_7G00195240
rosa_samantha Rh1DG155100 Rh2CG444000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 237
AciI CCGC 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 272
AdeI CACNNNGTG 1 cut(s) 105
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 216
AjnI CCWGG 1 cut(s) 83
AoxI GGCC 1 cut(s) 218
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
AsuHPI GGTGA 1 cut(s) 216
BccI CCATC 2 cut(s) 110, 161
BciT130I CCWGG 1 cut(s) 85
BclI TGATCA 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 85
BmrI ACTGGG 1 cut(s) 111
BmsI GCATC 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse1I ACTGG 2 cut(s) 13, 106
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 216
BseNI ACTGG 2 cut(s) 13, 106
BshFI GGCC 1 cut(s) 220
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 278
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 1 cut(s) 220
Bsp1407I TGTACA 1 cut(s) 109
Bsp143I GATC 1 cut(s) 96
BspACI CCGC 1 cut(s) 37
BspANI GGCC 1 cut(s) 220
BsrGI TGTACA 1 cut(s) 109
BsrI ACTGG 2 cut(s) 13, 106
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 211
BstAUI TGTACA 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 300
BstDSI CCRYGG 1 cut(s) 210
BstKTI GATC 1 cut(s) 99
BstMBI GATC 1 cut(s) 96
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 83
BsuRI GGCC 1 cut(s) 220
BtgI CCRYGG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 110
CspCI CAANNNNNGTGG 2 cut(s) 138, 173
CviAII CATG 1 cut(s) 42
CviJI RGCY 3 cut(s) 12, 220, 245
CviKI_1 RGCY 3 cut(s) 12, 220, 245
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 1 cut(s) 300
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
DraI TTTAAA 1 cut(s) 33
DraIII CACNNNGTG 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 83
EcoT22I ATGCAT 1 cut(s) 136
FaeI CATG 1 cut(s) 45
FaiI YATR 4 cut(s) 43, 56, 80, 294
FaqI GGGAC 1 cut(s) 278
FatI CATG 1 cut(s) 41
FauI CCCGC 1 cut(s) 30
FbaI TGATCA 1 cut(s) 96
FblI GTMKAC 1 cut(s) 237
HaeIII GGCC 1 cut(s) 220
Hin1II CATG 1 cut(s) 45
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HphI GGTGA 1 cut(s) 216
Hpy166II GTNNAC 2 cut(s) 110, 238
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 185
Hpy8I GTNNAC 2 cut(s) 110, 238
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 300
Hsp92II CATG 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 1 cut(s) 96
LpnPI CCDG 6 cut(s) 70, 87, 97, 170, 209, 247
LweI GCATC 1 cut(s) 121
MaeIII GTNAC 2 cut(s) 4, 257
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 3 cut(s) 82, 140, 278
MluCI AATT 1 cut(s) 280
Mph1103I ATGCAT 1 cut(s) 136
MseI TTAA 2 cut(s) 32, 180
MspR9I CCNGG 1 cut(s) 85
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 1 cut(s) 85
NdeII GATC 1 cut(s) 96
NlaIII CATG 1 cut(s) 45
NsiI ATGCAT 1 cut(s) 136
PctI GAATGC 1 cut(s) 79
PfoI TCCNGGA 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 2 cut(s) 32, 180
Sau3AI GATC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 85
SetI ASST 1 cut(s) 229
SfaNI GCATC 1 cut(s) 121
Sse9I AATT 1 cut(s) 280
SsiI CCGC 1 cut(s) 37
StyD4I CCNGG 1 cut(s) 83
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 2 cut(s) 204, 237
TasI AATT 1 cut(s) 280
TatI WGTACW 1 cut(s) 109
Tru1I TTAA 2 cut(s) 32, 180
Tru9I TTAA 2 cut(s) 32, 180
TscAI CASTG 1 cut(s) 106
TspDTI ATGAA 2 cut(s) 71, 141
TspRI CASTG 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 237
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.