PPR repeat
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom02g13060 |
| rosa_laevigata | RLG00000001550 |
| rosa_roxburghii | Rroxscaffold_7G00195240 |
| rosa_samantha | Rh1DG155100 Rh2CG444000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 84 |
| AcsI | RAATTY | 1 cut(s) | 159 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 84 |
| AflII | CTTAAG | 1 cut(s) | 184 |
| AluBI | AGCT | 1 cut(s) | 134 |
| AluI | AGCT | 1 cut(s) | 134 |
| Alw26I | GTCTC | 1 cut(s) | 160 |
| ApoI | RAATTY | 1 cut(s) | 159 |
| AsuHPI | GGTGA | 1 cut(s) | 70 |
| BccI | CCATC | 1 cut(s) | 148 |
| BcoDI | GTCTC | 1 cut(s) | 160 |
| BfrI | CTTAAG | 1 cut(s) | 184 |
| BmsI | GCATC | 1 cut(s) | 28 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 84 |
| Bse3DI | GCAATG | 1 cut(s) | 196 |
| BseGI | GGATG | 1 cut(s) | 17 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 84 |
| BseMI | GCAATG | 1 cut(s) | 196 |
| BseRI | GAGGAG | 1 cut(s) | 136 |
| BseYI | CCCAGC | 1 cut(s) | 101 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 84 |
| BsmAI | GTCTC | 1 cut(s) | 160 |
| BsmI | GAATGC | 1 cut(s) | 79 |
| BspTI | CTTAAG | 1 cut(s) | 184 |
| BsrDI | GCAATG | 1 cut(s) | 196 |
| Bst6I | CTCTTC | 1 cut(s) | 22 |
| BstAFI | CTTAAG | 1 cut(s) | 184 |
| BstF5I | GGATG | 1 cut(s) | 17 |
| BstMAI | GTCTC | 1 cut(s) | 160 |
| BtsCI | GGATG | 1 cut(s) | 17 |
| CviAII | CATG | 2 cut(s) | 8, 94 |
| CviJI | RGCY | 2 cut(s) | 106, 134 |
| CviKI_1 | RGCY | 2 cut(s) | 106, 134 |
| Eam1104I | CTCTTC | 1 cut(s) | 22 |
| EarI | CTCTTC | 1 cut(s) | 22 |
| FaeI | CATG | 2 cut(s) | 11, 97 |
| FaiI | YATR | 3 cut(s) | 9, 24, 95 |
| FatI | CATG | 2 cut(s) | 7, 93 |
| FokI | GGATG | 1 cut(s) | 24 |
| GsaI | CCCAGC | 1 cut(s) | 105 |
| Hin1II | CATG | 2 cut(s) | 11, 97 |
| HindIII | AAGCTT | 1 cut(s) | 132 |
| HinfI | GANTC | 1 cut(s) | 4 |
| HphI | GGTGA | 1 cut(s) | 70 |
| Hpy166II | GTNNAC | 1 cut(s) | 87 |
| Hpy8I | GTNNAC | 1 cut(s) | 87 |
| Hsp92II | CATG | 2 cut(s) | 11, 97 |
| LpnPI | CCDG | 3 cut(s) | 51, 87, 125 |
| LweI | GCATC | 1 cut(s) | 28 |
| MboII | GAAGA | 3 cut(s) | 39, 47, 82 |
| MluCI | AATT | 1 cut(s) | 159 |
| MnlI | CCTC | 3 cut(s) | 49, 114, 121 |
| MseI | TTAA | 1 cut(s) | 185 |
| MspCI | CTTAAG | 1 cut(s) | 184 |
| Mva1269I | GAATGC | 1 cut(s) | 79 |
| NlaIII | CATG | 2 cut(s) | 11, 97 |
| PctI | GAATGC | 1 cut(s) | 79 |
| PfeI | GAWTC | 1 cut(s) | 4 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 84 |
| PspFI | CCCAGC | 1 cut(s) | 101 |
| SaqAI | TTAA | 1 cut(s) | 185 |
| SetI | ASST | 2 cut(s) | 60, 136 |
| SfaNI | GCATC | 1 cut(s) | 28 |
| SmlI | CTYRAG | 1 cut(s) | 184 |
| SmoI | CTYRAG | 1 cut(s) | 184 |
| Sse9I | AATT | 1 cut(s) | 159 |
| TasI | AATT | 1 cut(s) | 159 |
| TfiI | GAWTC | 1 cut(s) | 4 |
| Tru1I | TTAA | 1 cut(s) | 185 |
| Tru9I | TTAA | 1 cut(s) | 185 |
| TspDTI | ATGAA | 1 cut(s) | 207 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 84 |
| Vha464I | CTTAAG | 1 cut(s) | 184 |
| XapI | RAATTY | 1 cut(s) | 159 |