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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD17G1108900.v1.1 |
| pyrus_communis | pycom01g03490 pycom02g19090 pycom02g19120 pycom13g18600 pycom17g16210 pycom17g16270 pycom17g17880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 312, 647, 1208, 2684 |
| AatII | GACGTC | 1 cut(s) | 2114 |
| AbsI | CCTCGAGG | 1 cut(s) | 1401 |
| AccBSI | CCGCTC | 1 cut(s) | 3157 |
| AccI | GTMKAC | 4 cut(s) | 769, 814, 2033, 2192 |
| AccII | CGCG | 2 cut(s) | 1379, 1381 |
| AciI | CCGC | 4 cut(s) | 365, 1370, 2620, 3155 |
| AclI | AACGTT | 1 cut(s) | 399 |
| AclWI | GGATC | 3 cut(s) | 894, 1947, 2074 |
| AcoI | YGGCCR | 2 cut(s) | 1242, 1657 |
| AcuI | CTGAAG | 5 cut(s) | 188, 738, 2413, 2457, 2835 |
| AcyI | GRCGYC | 1 cut(s) | 2111 |
| AfaI | GTAC | 6 cut(s) | 291, 947, 1811, 2213, 2422, 2542 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1229, 1251, 1336, 1813, 2956 |
| AflIII | ACRYGT | 2 cut(s) | 520, 3110 |
| AjnI | CCWGG | 3 cut(s) | 80, 1390, 1812 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2984, 3016, 3293, 3325 |
| AluBI | AGCT | 7 cut(s) | 716, 793, 986, 1289, 1597, 2271, 2749 |
| AluI | AGCT | 7 cut(s) | 716, 793, 986, 1289, 1597, 2271, 2749 |
| Alw21I | GWGCWC | 6 cut(s) | 531, 837, 1549, 2273, 2949, 2976 |
| Alw26I | GTCTC | 6 cut(s) | 61, 108, 1066, 1576, 2896, 3130 |
| Alw44I | GTGCAC | 3 cut(s) | 527, 833, 1545 |
| AlwI | GGATC | 3 cut(s) | 894, 1947, 2074 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2833 |
| Ama87I | CYCGRG | 3 cut(s) | 843, 1401, 1729 |
| AoxI | GGCC | 2 cut(s) | 1242, 1657 |
| ApaLI | GTGCAC | 3 cut(s) | 527, 833, 1545 |
| ApeKI | GCWGC | 2 cut(s) | 983, 1372 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2000, 2032 |
| AseI | ATTAAT | 2 cut(s) | 3105, 3191 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1908, 3232 |
| AspLEI | GCGC | 2 cut(s) | 196, 1381 |
| AspS9I | GGNCC | 5 cut(s) | 737, 960, 1034, 1198, 1871 |
| AsuC2I | CCSGG | 2 cut(s) | 844, 845 |
| AsuHPI | GGTGA | 2 cut(s) | 1433, 1911 |
| AsuII | TTCGAA | 1 cut(s) | 1902 |
| AvaI | CYCGRG | 3 cut(s) | 843, 1401, 1729 |
| AvaII | GGWCC | 5 cut(s) | 737, 960, 1034, 1198, 1871 |
| BaeGI | GKGCMC | 4 cut(s) | 531, 837, 1342, 1549 |
| BanII | GRGCYC | 1 cut(s) | 2273 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1164, 1196 |
| BbsI | GAAGAC | 1 cut(s) | 2445 |
| Bbv12I | GWGCWC | 6 cut(s) | 531, 837, 1549, 2273, 2949, 2976 |
| BbvI | GCAGC | 2 cut(s) | 995, 1359 |
| BccI | CCATC | 2 cut(s) | 239, 259 |
| BceAI | ACGGC | 2 cut(s) | 338, 1672 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3258, 3262, 3292, 3296 |
| BciT130I | CCWGG | 3 cut(s) | 82, 1392, 1814 |
| BciVI | GTATCC | 1 cut(s) | 2192 |
| BclI | TGATCA | 5 cut(s) | 990, 1536, 1642, 1707, 2697 |
| BcnI | CCSGG | 2 cut(s) | 844, 845 |
| BcoDI | GTCTC | 6 cut(s) | 61, 108, 1066, 1576, 2896, 3130 |
| BfaI | CTAG | 5 cut(s) | 368, 473, 2498, 2766, 3219 |
| BfuI | GTATCC | 1 cut(s) | 2192 |
| BisI | GCNGC | 3 cut(s) | 984, 1373, 2620 |
| BlsI | GCNGC | 3 cut(s) | 985, 1374, 2621 |
| Bme1390I | CCNGG | 5 cut(s) | 82, 844, 845, 1392, 1814 |
| Bme18I | GGWCC | 5 cut(s) | 737, 960, 1034, 1198, 1871 |
| BmeT110I | CYCGRG | 3 cut(s) | 843, 1401, 1729 |
| BmgT120I | GGNCC | 5 cut(s) | 737, 960, 1034, 1198, 1871 |
| BmiI | GGNNCC | 4 cut(s) | 738, 962, 1199, 1462 |
| BmrFI | CCNGG | 5 cut(s) | 82, 844, 845, 1392, 1814 |
| BmsI | GCATC | 8 cut(s) | 1038, 1351, 1734, 1753, 2301, 2396, 2436, 3317 |
| BpiI | GAAGAC | 1 cut(s) | 2445 |
| Bpu14I | TTCGAA | 1 cut(s) | 1902 |
| BpuEI | CTTGAG | 3 cut(s) | 2378, 2460, 2480 |
| BpuMI | CCSGG | 2 cut(s) | 844, 845 |
| Bsa29I | ATCGAT | 2 cut(s) | 2078, 3272 |
| BsaAI | YACGTR | 1 cut(s) | 411 |
| BsaHI | GRCGYC | 1 cut(s) | 2111 |
| BsaJI | CCNNGG | 3 cut(s) | 758, 843, 2146 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1224, 1254, 2761, 2791 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1229, 1251, 1336, 1813, 2956 |
| Bse1I | ACTGG | 1 cut(s) | 675 |
| BseBI | CCWGG | 3 cut(s) | 82, 1392, 1814 |
| BseCI | ATCGAT | 2 cut(s) | 2078, 3272 |
| BseDI | CCNNGG | 3 cut(s) | 758, 843, 2146 |
| BseGI | GGATG | 6 cut(s) | 90, 270, 1053, 1260, 1366, 3332 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1229, 1251, 1336, 1813, 2956 |
| BseNI | ACTGG | 1 cut(s) | 675 |
| BseRI | GAGGAG | 2 cut(s) | 1571, 3149 |
| BseSI | GKGCMC | 4 cut(s) | 531, 837, 1342, 1549 |
| BseXI | GCAGC | 2 cut(s) | 995, 1359 |
| BseYI | CCCAGC | 1 cut(s) | 789 |
| Bsh1236I | CGCG | 2 cut(s) | 1379, 1381 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3272 |
| BshFI | GGCC | 2 cut(s) | 1244, 1659 |
| BshVI | ATCGAT | 2 cut(s) | 2078, 3272 |
| BsiEI | CGRYCG | 1 cut(s) | 3272 |
| BsiHKAI | GWGCWC | 6 cut(s) | 531, 837, 1549, 2273, 2949, 2976 |
| BsiHKCI | CYCGRG | 3 cut(s) | 843, 1401, 1729 |
| BsiSI | CCGG | 1 cut(s) | 844 |
| BslFI | GGGAC | 2 cut(s) | 18, 946 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1229, 1251, 1336, 1813, 2956 |
| BsmAI | GTCTC | 6 cut(s) | 61, 108, 1066, 1576, 2896, 3130 |
| BsmBI | CGTCTC | 2 cut(s) | 1066, 2896 |
| BsmFI | GGGAC | 2 cut(s) | 18, 946 |
| BsmI | GAATGC | 1 cut(s) | 3077 |
| BsnI | GGCC | 2 cut(s) | 1244, 1659 |
| BsoBI | CYCGRG | 3 cut(s) | 843, 1401, 1729 |
| Bsp119I | TTCGAA | 1 cut(s) | 1902 |
| Bsp1286I | GDGCHC | 7 cut(s) | 531, 837, 1342, 1549, 2273, 2949, 2976 |
| Bsp1407I | TGTACA | 1 cut(s) | 289 |
| BspACI | CCGC | 4 cut(s) | 365, 1370, 2620, 3155 |
| BspANI | GGCC | 2 cut(s) | 1244, 1659 |
| BspDI | ATCGAT | 2 cut(s) | 2078, 3272 |
| BspFNI | CGCG | 2 cut(s) | 1379, 1381 |
| BspHI | TCATGA | 1 cut(s) | 63 |
| BspLI | GGNNCC | 4 cut(s) | 738, 962, 1199, 1462 |
| BspPI | GGATC | 3 cut(s) | 894, 1947, 2074 |
| BspQI | GCTCTTC | 1 cut(s) | 2278 |
| BspT104I | TTCGAA | 1 cut(s) | 1902 |
| BsrBI | CCGCTC | 1 cut(s) | 3157 |
| BsrGI | TGTACA | 1 cut(s) | 289 |
| BsrI | ACTGG | 1 cut(s) | 675 |
| BssECI | CCNNGG | 3 cut(s) | 758, 843, 2146 |
| BssNAI | GTATAC | 1 cut(s) | 2193 |
| BssNI | GRCGYC | 1 cut(s) | 2111 |
| BssT1I | CCWWGG | 1 cut(s) | 758 |
| Bst1107I | GTATAC | 1 cut(s) | 2193 |
| Bst2UI | CCWGG | 3 cut(s) | 82, 1392, 1814 |
| Bst4CI | ACNGT | 3 cut(s) | 580, 894, 1650 |
| Bst6I | CTCTTC | 3 cut(s) | 2278, 2610, 2899 |
| BstACI | GRCGYC | 1 cut(s) | 2111 |
| BstAUI | TGTACA | 1 cut(s) | 289 |
| BstBAI | YACGTR | 1 cut(s) | 411 |
| BstBI | TTCGAA | 1 cut(s) | 1902 |
| BstC8I | GCNNGC | 7 cut(s) | 1366, 1370, 1377, 1599, 1768, 3075, 3281 |
| BstDEI | CTNAG | 5 cut(s) | 712, 1184, 1886, 2333, 2814 |
| BstF5I | GGATG | 6 cut(s) | 90, 270, 1053, 1260, 1366, 3332 |
| BstFNI | CGCG | 2 cut(s) | 1379, 1381 |
| BstHHI | GCGC | 2 cut(s) | 196, 1381 |
| BstMAI | GTCTC | 6 cut(s) | 61, 108, 1066, 1576, 2896, 3130 |
| BstMCI | CGRYCG | 1 cut(s) | 3272 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1346, 1378, 1731, 2399 |
| BstNI | CCWGG | 3 cut(s) | 82, 1392, 1814 |
| BstNSI | RCATGY | 4 cut(s) | 524, 983, 1976, 3114 |
| BstSCI | CCNGG | 5 cut(s) | 80, 842, 843, 1390, 1812 |
| BstSLI | GKGCMC | 4 cut(s) | 531, 837, 1342, 1549 |
| BstUI | CGCG | 2 cut(s) | 1379, 1381 |
| BstV1I | GCAGC | 2 cut(s) | 995, 1359 |
| BstV2I | GAAGAC | 1 cut(s) | 2445 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1044 |
| BstZ17I | GTATAC | 1 cut(s) | 2193 |
| Bsu15I | ATCGAT | 2 cut(s) | 2078, 3272 |
| BsuI | GTATCC | 1 cut(s) | 2192 |
| BsuRI | GGCC | 2 cut(s) | 1244, 1659 |
| BsuTUI | ATCGAT | 2 cut(s) | 2078, 3272 |
| BtsCI | GGATG | 6 cut(s) | 90, 270, 1053, 1260, 1366, 3332 |
| BtsIMutI | CAGTG | 1 cut(s) | 2433 |
| Cac8I | GCNNGC | 7 cut(s) | 1366, 1370, 1377, 1599, 1768, 3075, 3281 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2833 |
| CciI | TCATGA | 1 cut(s) | 63 |
| CfoI | GCGC | 2 cut(s) | 196, 1381 |
| Cfr13I | GGNCC | 5 cut(s) | 737, 960, 1034, 1198, 1871 |
| Cfr9I | CCCGGG | 1 cut(s) | 843 |
| ClaI | ATCGAT | 2 cut(s) | 2078, 3272 |
| CseI | GACGC | 2 cut(s) | 2019, 2272 |
| CsiI | ACCWGGT | 1 cut(s) | 1390 |
| Csp6I | GTAC | 6 cut(s) | 290, 946, 1810, 2212, 2421, 2541 |
| CviQI | GTAC | 6 cut(s) | 290, 946, 1810, 2212, 2421, 2541 |
| DdeI | CTNAG | 5 cut(s) | 712, 1184, 1886, 2333, 2814 |
| DraI | TTTAAA | 2 cut(s) | 492, 555 |
| EaeI | YGGCCR | 2 cut(s) | 1242, 1657 |
| Eam1104I | CTCTTC | 3 cut(s) | 2278, 2610, 2899 |
| EarI | CTCTTC | 3 cut(s) | 2278, 2610, 2899 |
| Ecl136II | GAGCTC | 1 cut(s) | 2271 |
| Eco130I | CCWWGG | 1 cut(s) | 758 |
| Eco24I | GRGCYC | 1 cut(s) | 2273 |
| Eco47I | GGWCC | 5 cut(s) | 737, 960, 1034, 1198, 1871 |
| Eco53kI | GAGCTC | 1 cut(s) | 2271 |
| Eco57I | CTGAAG | 5 cut(s) | 188, 738, 2413, 2457, 2835 |
| Eco88I | CYCGRG | 3 cut(s) | 843, 1401, 1729 |
| EcoICRI | GAGCTC | 1 cut(s) | 2271 |
| EcoRII | CCWGG | 3 cut(s) | 80, 1390, 1812 |
| EcoT14I | CCWWGG | 1 cut(s) | 758 |
| EcoT38I | GRGCYC | 1 cut(s) | 2273 |
| ErhI | CCWWGG | 1 cut(s) | 758 |
| Esp3I | CGTCTC | 2 cut(s) | 1066, 2896 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2114, 2146 |
| FaqI | GGGAC | 2 cut(s) | 18, 946 |
| FauI | CCCGC | 1 cut(s) | 1377 |
| FauNDI | CATATG | 2 cut(s) | 1704, 2172 |
| FbaI | TGATCA | 5 cut(s) | 990, 1536, 1642, 1707, 2697 |
| FblI | GTMKAC | 4 cut(s) | 769, 814, 2033, 2192 |
| Fnu4HI | GCNGC | 3 cut(s) | 984, 1373, 2620 |
| FokI | GGATG | 6 cut(s) | 97, 277, 1060, 1267, 1373, 3339 |
| FriOI | GRGCYC | 1 cut(s) | 2273 |
| Fsp4HI | GCNGC | 3 cut(s) | 984, 1373, 2620 |
| FspBI | CTAG | 5 cut(s) | 368, 473, 2498, 2766, 3219 |
| GlaI | GCGC | 2 cut(s) | 195, 1380 |
| GluI | GCNGC | 3 cut(s) | 984, 1373, 2620 |
| GsaI | CCCAGC | 1 cut(s) | 793 |
| HaeIII | GGCC | 2 cut(s) | 1244, 1659 |
| HapII | CCGG | 1 cut(s) | 844 |
| HgaI | GACGC | 2 cut(s) | 2019, 2272 |
| HhaI | GCGC | 2 cut(s) | 196, 1381 |
| Hin1I | GRCGYC | 1 cut(s) | 2111 |
| Hin6I | GCGC | 2 cut(s) | 194, 1379 |
| HinP1I | GCGC | 2 cut(s) | 194, 1379 |
| HincII | GTYRAC | 6 cut(s) | 403, 458, 1003, 2013, 2127, 2825 |
| HindII | GTYRAC | 6 cut(s) | 403, 458, 1003, 2013, 2127, 2825 |
| HinfI | GANTC | 9 cut(s) | 425, 811, 1736, 1904, 1916, 3046, 3149, 3364, 3393 |
| HpaI | GTTAAC | 2 cut(s) | 403, 1003 |
| HpaII | CCGG | 1 cut(s) | 844 |
| HphI | GGTGA | 2 cut(s) | 1433, 1911 |
| Hpy188I | TCNGA | 8 cut(s) | 618, 1741, 1750, 1758, 1804, 2147, 2638, 2854 |
| Hpy99I | CGWCG | 3 cut(s) | 1953, 2113, 2408 |
| HpyCH4III | ACNGT | 3 cut(s) | 580, 894, 1650 |
| HpyCH4IV | ACGT | 8 cut(s) | 399, 410, 831, 837, 1549, 2015, 2111, 2294 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1346, 1378, 1731, 2399 |
| HpyF3I | CTNAG | 5 cut(s) | 712, 1184, 1886, 2333, 2814 |
| HpySE526I | ACGT | 8 cut(s) | 399, 410, 831, 837, 1549, 2015, 2111, 2294 |
| Hsp92I | GRCGYC | 1 cut(s) | 2111 |
| HspAI | GCGC | 2 cut(s) | 194, 1379 |
| Ksp22I | TGATCA | 5 cut(s) | 990, 1536, 1642, 1707, 2697 |
| KspAI | GTTAAC | 2 cut(s) | 403, 1003 |
| LguI | GCTCTTC | 1 cut(s) | 2278 |
| LmnI | GCTCC | 4 cut(s) | 798, 1466, 2971, 3162 |
| Lsp1109I | GCAGC | 2 cut(s) | 995, 1359 |
| LweI | GCATC | 8 cut(s) | 1038, 1351, 1734, 1753, 2301, 2396, 2436, 3317 |
| MabI | ACCWGGT | 1 cut(s) | 1390 |
| MaeI | CTAG | 5 cut(s) | 368, 473, 2498, 2766, 3219 |
| MaeII | ACGT | 8 cut(s) | 399, 410, 831, 837, 1549, 2015, 2111, 2294 |
| MaeIII | GTNAC | 9 cut(s) | 422, 502, 707, 781, 1171, 1325, 1439, 1793, 2112 |
| MbiI | CCGCTC | 1 cut(s) | 3157 |
| MboII | GAAGA | 9 cut(s) | 744, 1540, 1745, 1891, 1972, 2265, 2450, 2597, 2886 |
| MfeI | CAATTG | 2 cut(s) | 1015, 1467 |
| MhlI | GDGCHC | 7 cut(s) | 531, 837, 1342, 1549, 2273, 2949, 2976 |
| MlyI | GAGTC | 3 cut(s) | 419, 820, 1910 |
| MmeI | TCCRAC | 2 cut(s) | 1764, 2897 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1908, 3232 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1042, 3054 |
| MspA1I | CMGCKG | 1 cut(s) | 1372 |
| MspI | CCGG | 1 cut(s) | 844 |
| MspR9I | CCNGG | 5 cut(s) | 82, 844, 845, 1392, 1814 |
| MunI | CAATTG | 2 cut(s) | 1015, 1467 |
| Mva1269I | GAATGC | 1 cut(s) | 3077 |
| MvaI | CCWGG | 3 cut(s) | 82, 1392, 1814 |
| MvnI | CGCG | 2 cut(s) | 1379, 1381 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1346, 1378, 1731, 2399 |
| NciI | CCSGG | 2 cut(s) | 844, 845 |
| NdeI | CATATG | 2 cut(s) | 1704, 2172 |
| NlaIV | GGNNCC | 4 cut(s) | 738, 962, 1199, 1462 |
| NmuCI | GTSAC | 5 cut(s) | 422, 502, 781, 1439, 2112 |
| NspI | RCATGY | 4 cut(s) | 524, 983, 1976, 3114 |
| NspV | TTCGAA | 1 cut(s) | 1902 |
| PacI | TTAATTAA | 1 cut(s) | 3105 |
| PaeR7I | CTCGAG | 2 cut(s) | 1401, 1729 |
| PagI | TCATGA | 1 cut(s) | 63 |
| PciI | ACATGT | 2 cut(s) | 520, 3110 |
| PciSI | GCTCTTC | 1 cut(s) | 2278 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2012 |
| PctI | GAATGC | 1 cut(s) | 3077 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1908, 3232 |
| PfeI | GAWTC | 6 cut(s) | 1736, 1904, 3046, 3149, 3364, 3393 |
| PkrI | GCNGC | 3 cut(s) | 985, 1374, 2621 |
| Ple19I | CGATCG | 1 cut(s) | 3272 |
| PleI | GAGTC | 3 cut(s) | 419, 819, 1910 |
| PpsI | GAGTC | 3 cut(s) | 419, 819, 1910 |
| Ppu21I | YACGTR | 1 cut(s) | 411 |
| PscI | ACATGT | 2 cut(s) | 520, 3110 |
| PshBI | ATTAAT | 2 cut(s) | 3105, 3191 |
| PsiI | TTATAA | 4 cut(s) | 312, 647, 1208, 2684 |
| Psp124BI | GAGCTC | 1 cut(s) | 2273 |
| Psp1406I | AACGTT | 1 cut(s) | 399 |
| Psp6I | CCWGG | 3 cut(s) | 80, 1390, 1812 |
| PspFI | CCCAGC | 1 cut(s) | 789 |
| PspGI | CCWGG | 3 cut(s) | 80, 1390, 1812 |
| PspN4I | GGNNCC | 4 cut(s) | 738, 962, 1199, 1462 |
| PspPI | GGNCC | 5 cut(s) | 737, 960, 1034, 1198, 1871 |
| PspXI | VCTCGAGB | 1 cut(s) | 1401 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2833 |
| PvuI | CGATCG | 1 cut(s) | 3272 |
| RsaI | GTAC | 6 cut(s) | 291, 947, 1811, 2213, 2422, 2542 |
| RsaNI | GTAC | 6 cut(s) | 290, 946, 1810, 2212, 2421, 2541 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1042, 3054 |
| SacI | GAGCTC | 1 cut(s) | 2273 |
| SapI | GCTCTTC | 1 cut(s) | 2278 |
| SatI | GCNGC | 3 cut(s) | 984, 1373, 2620 |
| Sau96I | GGNCC | 5 cut(s) | 737, 960, 1034, 1198, 1871 |
| SchI | GAGTC | 3 cut(s) | 419, 820, 1910 |
| ScrFI | CCNGG | 5 cut(s) | 82, 844, 845, 1392, 1814 |
| SduI | GDGCHC | 7 cut(s) | 531, 837, 1342, 1549, 2273, 2949, 2976 |
| SexAI | ACCWGGT | 1 cut(s) | 1390 |
| SfaNI | GCATC | 8 cut(s) | 1038, 1351, 1734, 1753, 2301, 2396, 2436, 3317 |
| Sfr274I | CTCGAG | 2 cut(s) | 1401, 1729 |
| SfuI | TTCGAA | 1 cut(s) | 1902 |
| SinI | GGWCC | 5 cut(s) | 737, 960, 1034, 1198, 1871 |
| SlaI | CTCGAG | 2 cut(s) | 1401, 1729 |
| SmaI | CCCGGG | 1 cut(s) | 845 |
| SmiI | ATTTAAAT | 1 cut(s) | 555 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1042, 3054 |
| SmlI | CTYRAG | 5 cut(s) | 1401, 1729, 2357, 2459, 2475 |
| SmoI | CTYRAG | 5 cut(s) | 1401, 1729, 2357, 2459, 2475 |
| SsiI | CCGC | 4 cut(s) | 365, 1370, 2620, 3155 |
| SspI | AATATT | 1 cut(s) | 1715 |
| SspMI | CTAG | 5 cut(s) | 368, 473, 2498, 2766, 3219 |
| SstI | GAGCTC | 1 cut(s) | 2273 |
| StyD4I | CCNGG | 5 cut(s) | 80, 842, 843, 1390, 1812 |
| StyI | CCWWGG | 1 cut(s) | 758 |
| SwaI | ATTTAAAT | 1 cut(s) | 555 |
| TaaI | ACNGT | 3 cut(s) | 580, 894, 1650 |
| TaiI | ACGT | 8 cut(s) | 402, 413, 834, 840, 1552, 2018, 2114, 2297 |
| TaqI | TCGA | 9 cut(s) | 1355, 1402, 1730, 1902, 2078, 2862, 2954, 3272, 3381 |
| TaqII | GACCGA | 1 cut(s) | 1233 |
| TatI | WGTACW | 4 cut(s) | 289, 2211, 2420, 2540 |
| TauI | GCSGC | 1 cut(s) | 2622 |
| TfiI | GAWTC | 6 cut(s) | 1736, 1904, 3046, 3149, 3364, 3393 |
| TscAI | CASTG | 1 cut(s) | 2440 |
| TseFI | GTSAC | 5 cut(s) | 422, 502, 781, 1439, 2112 |
| TseI | GCWGC | 2 cut(s) | 983, 1372 |
| Tsp45I | GTSAC | 5 cut(s) | 422, 502, 781, 1439, 2112 |
| TspMI | CCCGGG | 1 cut(s) | 843 |
| TspRI | CASTG | 1 cut(s) | 2440 |
| VneI | GTGCAC | 3 cut(s) | 527, 833, 1545 |
| VpaK11BI | GGWCC | 5 cut(s) | 737, 960, 1034, 1198, 1871 |
| VspI | ATTAAT | 2 cut(s) | 3105, 3191 |
| XbaI | TCTAGA | 1 cut(s) | 2497 |
| XceI | RCATGY | 4 cut(s) | 524, 983, 1976, 3114 |
| XhoI | CTCGAG | 2 cut(s) | 1401, 1729 |
| XmaI | CCCGGG | 1 cut(s) | 843 |
| XmiI | GTMKAC | 4 cut(s) | 769, 814, 2033, 2192 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1908, 3232 |
| XspI | CTAG | 5 cut(s) | 368, 473, 2498, 2766, 3219 |
| ZraI | GACGTC | 1 cut(s) | 2112 |