pycom02g21830

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0019811
Physical Location & Seq
Forward (+)
20018898 .. 20021303
2406 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g21830.4

Sequence Viewer

Length: 705 bp
ATGAATTACATGGTGATGGCCGGTGCGCTTATTGTATCCGGAGGATCCTCCGTTGCTGCTACTACTAGCACTAACAGTTCGATCTTTGTTTCCGTCATCCAATGGTGCATCCTCAACTTCCATTTTCTTATTCACTTCAACTCAAATGAATATGGAGGACAGTATGGCCGAAGACACAAATCAGGCATCGGCACCTACAGCCCCAGGTTTGGTCAACAGCCGGTTTTAACCTCACAATCTGCCTCTGTATTCGGAGGAACACCCGCAGCCCCAGCAGCAAGCCCCTTCCAATTTGCAGGCCAACAGAACCTAACCAACCCACAGAACCCTAACCCATTTCAGGCTTCTGGTAGTTTGGGTGCGAATCAGTGGTCAGGAGGCAGCTTCCCAGTTGGCTCCAGTGGTGGTGATGGTGACAACCGAAGAATAATTAAAGGTAAACACAACAGAAAATATAATTTCTCTGTTAATAGTTTAAAACTGGATTTCATCAGTGGAAATTTCAATATAGTTATGGAACCAACAAGAGTTTCTAGGATGTGCTGGATAGGATTCAACAATAATACATATAACTCCACATTATTGCTCCTACTTCCACATATAACCACGTTGTGGATGTGCTTGCTTCCCAATAGTTACTTTTGGACAAGTTTGCTTCTTTTTGACTCATTGCTACTTTCTTCTGTTTATTTGGCAACCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05169 map03013 map05169
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

25.49

Weight (kDa)

9.58

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019811)

Species Orthologous Gene IDs
pyrus_communis pycom02g21830 pycom02g21890 pycom02g21910
rosa_chinensis RchiOBHm_Chr1g0366041
rosa_multiflora Rmu_sc0003987.1_g000015
rosa_samantha Rh1AG335300
rosa_wichuraiana Rw1G029730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AccB7I CCANNNNNTGG 1 cut(s) 612
AccIII TCCGGA 1 cut(s) 38
AciI CCGC 1 cut(s) 264
AclWI GGATC 2 cut(s) 39, 52
AcoI YGGCCR 2 cut(s) 18, 166
AcsI RAATTY 1 cut(s) 499
AdeI CACNNNGTG 1 cut(s) 612
AfiI CCNNNNNNNGG 3 cut(s) 209, 340, 612
AgsI TTSAA 3 cut(s) 139, 505, 556
AjnI CCWGG 1 cut(s) 203
AjuI GAANNNNNNNTTGG 2 cut(s) 514, 546
AluBI AGCT 1 cut(s) 384
AluI AGCT 1 cut(s) 384
AlwI GGATC 2 cut(s) 39, 52
Aor13HI TCCGGA 1 cut(s) 38
AoxI GGCC 3 cut(s) 18, 166, 298
ApeKI GCWGC 4 cut(s) 56, 266, 275, 381
ApoI RAATTY 1 cut(s) 499
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AspLEI GCGC 1 cut(s) 28
AsuHPI GGTGA 3 cut(s) 25, 419, 425
BamHI GGATCC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 178
BbvI GCAGC 4 cut(s) 43, 278, 287, 393
BccI CCATC 2 cut(s) 10, 404
BciT130I CCWGG 1 cut(s) 205
BciVI GTATCC 1 cut(s) 46
BfaI CTAG 2 cut(s) 66, 534
BfmI CTRYAG 1 cut(s) 196
BfuI GTATCC 1 cut(s) 46
BisI GCNGC 4 cut(s) 57, 267, 276, 382
BlsI GCNGC 4 cut(s) 58, 268, 277, 383
Bme1390I CCNGG 1 cut(s) 205
BmiI GGNNCC 4 cut(s) 46, 193, 397, 519
BmrFI CCNGG 1 cut(s) 205
BmrI ACTGGG 1 cut(s) 383
BmsI GCATC 2 cut(s) 117, 195
BmuI ACTGGG 1 cut(s) 383
BpiI GAAGAC 1 cut(s) 178
BpmI CTGGAG 1 cut(s) 382
BsaJI CCNNGG 1 cut(s) 203
BsaWI WCCGGW 1 cut(s) 38
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 340, 612
Bse118I RCCGGY 2 cut(s) 20, 220
Bse1I ACTGG 3 cut(s) 389, 399, 486
Bse3DI GCAATG 1 cut(s) 668
BseAI TCCGGA 1 cut(s) 38
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 203
BseGI GGATG 4 cut(s) 96, 108, 543, 621
BseLI CCNNNNNNNGG 3 cut(s) 209, 340, 612
BseMI GCAATG 1 cut(s) 668
BseNI ACTGG 3 cut(s) 389, 399, 486
BseXI GCAGC 4 cut(s) 43, 278, 287, 393
BseYI CCCAGC 1 cut(s) 271
BshFI GGCC 3 cut(s) 20, 168, 300
BshNI GGYRCC 1 cut(s) 191
BsiSI CCGG 3 cut(s) 21, 39, 221
BslI CCNNNNNNNGG 3 cut(s) 209, 340, 612
BsnI GGCC 3 cut(s) 20, 168, 300
Bsp13I TCCGGA 1 cut(s) 38
Bsp143I GATC 2 cut(s) 44, 81
BspACI CCGC 1 cut(s) 264
BspANI GGCC 3 cut(s) 20, 168, 300
BspEI TCCGGA 1 cut(s) 38
BspLI GGNNCC 4 cut(s) 46, 193, 397, 519
BspPI GGATC 2 cut(s) 39, 52
BspT107I GGYRCC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 668
BsrFI RCCGGY 2 cut(s) 20, 220
BsrI ACTGG 3 cut(s) 389, 399, 486
BssAI RCCGGY 2 cut(s) 20, 220
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 2 cut(s) 44, 81
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 2 cut(s) 77, 162
BstC8I GCNNGC 3 cut(s) 280, 298, 623
BstF5I GGATG 4 cut(s) 96, 108, 543, 621
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 47, 84
BstMBI GATC 2 cut(s) 44, 81
BstMWI GCNNNNNNNGC 3 cut(s) 198, 272, 275
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 196
BstV1I GCAGC 4 cut(s) 43, 278, 287, 393
BstV2I GAAGAC 1 cut(s) 178
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BsuI GTATCC 1 cut(s) 46
BsuRI GGCC 3 cut(s) 20, 168, 300
BtsCI GGATG 4 cut(s) 96, 108, 543, 621
BtsIMutI CAGTG 3 cut(s) 374, 406, 499
Cac8I GCNNGC 3 cut(s) 280, 298, 623
CfoI GCGC 1 cut(s) 28
Cfr10I RCCGGY 2 cut(s) 20, 220
CviAII CATG 1 cut(s) 10
DpnI GATC 2 cut(s) 46, 83
DpnII GATC 2 cut(s) 44, 81
DraI TTTAAA 1 cut(s) 477
DraIII CACNNNGTG 1 cut(s) 612
EaeI YGGCCR 2 cut(s) 18, 166
EcoRII CCWGG 1 cut(s) 203
FaeI CATG 1 cut(s) 13
FatI CATG 1 cut(s) 9
FauI CCCGC 1 cut(s) 271
Fnu4HI GCNGC 4 cut(s) 57, 267, 276, 382
FokI GGATG 4 cut(s) 83, 95, 550, 628
Fsp4HI GCNGC 4 cut(s) 57, 267, 276, 382
FspBI CTAG 2 cut(s) 66, 534
GlaI GCGC 1 cut(s) 27
GluI GCNGC 4 cut(s) 57, 267, 276, 382
GsaI CCCAGC 1 cut(s) 275
GsuI CTGGAG 1 cut(s) 382
HaeIII GGCC 3 cut(s) 20, 168, 300
HapII CCGG 3 cut(s) 21, 39, 221
HhaI GCGC 1 cut(s) 28
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HincII GTYRAC 1 cut(s) 215
HindII GTYRAC 1 cut(s) 215
HinfI GANTC 3 cut(s) 364, 552, 665
HpaII CCGG 3 cut(s) 21, 39, 221
HphI GGTGA 3 cut(s) 25, 419, 425
Hpy166II GTNNAC 2 cut(s) 215, 440
Hpy188I TCNGA 1 cut(s) 254
Hpy188III TCNNGA 2 cut(s) 39, 375
Hpy8I GTNNAC 2 cut(s) 215, 440
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 2 cut(s) 77, 162
HpyCH4IV ACGT 1 cut(s) 608
HpyCH4V TGCA 2 cut(s) 108, 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 198, 272, 275
HpySE526I ACGT 1 cut(s) 608
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 1 cut(s) 26
Kpn2I TCCGGA 1 cut(s) 38
Kzo9I GATC 2 cut(s) 44, 81
LmnI GCTCC 2 cut(s) 401, 591
Lsp1109I GCAGC 4 cut(s) 43, 278, 287, 393
LweI GCATC 2 cut(s) 117, 195
MaeI CTAG 2 cut(s) 66, 534
MaeII ACGT 1 cut(s) 608
MaeIII GTNAC 2 cut(s) 413, 635
MalI GATC 2 cut(s) 46, 83
MboI GATC 2 cut(s) 44, 81
MboII GAAGA 3 cut(s) 183, 435, 672
MflI RGATCY 1 cut(s) 44
MluCI AATT 5 cut(s) 4, 290, 429, 457, 499
MlyI GAGTC 1 cut(s) 659
MnlI CCTC 8 cut(s) 35, 58, 122, 149, 241, 248, 253, 371
MroI TCCGGA 1 cut(s) 38
MseI TTAA 4 cut(s) 227, 432, 468, 476
MslI CAYNNNNRTG 1 cut(s) 14
MspI CCGG 3 cut(s) 21, 39, 221
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
MwoI GCNNNNNNNGC 3 cut(s) 198, 272, 275
NdeII GATC 2 cut(s) 44, 81
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 4 cut(s) 46, 193, 397, 519
NmuCI GTSAC 1 cut(s) 413
PfeI GAWTC 2 cut(s) 364, 552
PflMI CCANNNNNTGG 1 cut(s) 612
PkrI GCNGC 4 cut(s) 58, 268, 277, 383
PleI GAGTC 1 cut(s) 659
PpsI GAGTC 1 cut(s) 659
Psp6I CCWGG 1 cut(s) 203
PspFI CCCAGC 1 cut(s) 271
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 4 cut(s) 46, 193, 397, 519
PsuI RGATCY 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 4 cut(s) 227, 432, 468, 476
SatI GCNGC 4 cut(s) 57, 267, 276, 382
Sau3AI GATC 2 cut(s) 44, 81
SchI GAGTC 1 cut(s) 659
ScrFI CCNGG 1 cut(s) 205
SetI ASST 7 cut(s) 197, 209, 233, 312, 386, 439, 611
SfaNI GCATC 2 cut(s) 117, 195
SfcI CTRYAG 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 5 cut(s) 4, 290, 429, 457, 499
SsiI CCGC 1 cut(s) 264
SspMI CTAG 2 cut(s) 66, 534
StyD4I CCNGG 1 cut(s) 203
TaaI ACNGT 2 cut(s) 77, 162
TaiI ACGT 1 cut(s) 611
TaqI TCGA 1 cut(s) 80
TasI AATT 5 cut(s) 4, 290, 429, 457, 499
TfiI GAWTC 2 cut(s) 364, 552
Tru1I TTAA 4 cut(s) 227, 432, 468, 476
Tru9I TTAA 4 cut(s) 227, 432, 468, 476
TscAI CASTG 3 cut(s) 374, 406, 499
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 4 cut(s) 56, 266, 275, 381
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 3 cut(s) 17, 162, 478
TspGWI ACGGA 2 cut(s) 40, 82
TspRI CASTG 3 cut(s) 374, 406, 499
Van91I CCANNNNNTGG 1 cut(s) 612
XapI RAATTY 1 cut(s) 499
XspI CTAG 2 cut(s) 66, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.