Rh1AG335300

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0019811
Physical Location & Seq
Forward (+)
56934553 .. 56935524
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG335300.1

Sequence Viewer

Length: 972 bp
ATGATTAAACCTGGTTCATCAGCTTTCGGTTCGGTATTTAATTTTGCAGGAAATACAGCTTTCATTTCTGTATTTAATTTTGCAGGAAATACAACTTTCTCTTCTGGGAGCTGTGCACTCGGTTCTTCTACCCCCTCTTCTGAAGCCAACCCTAGCAGCTCCAGTAATGCTACAAGTACTATATTCAGTAGCGAGTGGAAACCTGCTATATCTTCTAAATTTGCTTCCACATTAAACTCTACATCTTTCTCACATGCGTTTCAATTCGATACATCCTCAGCCTCTGCTGCAACCAACACTACATCTACTTCATTTGGAGCATCCTTGATTTCTGCTACTACTTCTAACAGTGCAGCCACAATATTTGGAATGCCCTCCGCTTCTGCTCCTACGTCCAACAGTTTGCCTACTTTGTTTGGAGCATCCACAGTTTCTTCTCCAAGTACCAACAACGCATCGGTGTTTGGATTGTCCAATGGTGCATCATCAACCAGCATGTTCCCCTTTACATCATCTACAACTACTACTACCCCATCACAGCCTGCATTTGGTAACTCCAACTCTACATTTGGCTTCCCTACAGCTCCCTCGGGTAATAATGATCAAATGAATATGGAAGACAGCATGGCTGCACCTCCGCCTACAGTTGCAGTCTTTGCTCAACAGCCTTCCTCAACCACGCAGTTTACACCAACATTCCTAGTGTTTGGCCAGCAGCCTGTGTCAACCCCACAAGCCCCCTTTGTATTTGGAGGTTCCTCCAATGGCTTCCAGTTTCAGAGCCAACCAAACCAATCCAACTCACAGAACCCTCCACCATTTCAGGGTTCCAATAGTTTAGCCAACTTGCAAAACCCTGCACCATTTCAATATAGCCTAGGTTTGACCTCCAATAGCTTCTCATTGGGTGCCGCTGATAAGTCTAATAGAAGGATTGTGAGGGTTAATCACGGCAAGAACAGGAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05169 map03013 map05169
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

33.12

Weight (kDa)

9.58

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019811)

Species Orthologous Gene IDs
pyrus_communis pycom02g21830 pycom02g21890 pycom02g21910
rosa_chinensis RchiOBHm_Chr1g0366041
rosa_multiflora Rmu_sc0003987.1_g000015
rosa_samantha Rh1AG335300
rosa_wichuraiana Rw1G029730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 211
AccB1I GGYRCC 1 cut(s) 908
AciI CCGC 3 cut(s) 378, 638, 912
AcoI YGGCCR 1 cut(s) 709
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 2 cut(s) 178, 445
AfiI CCNNNNNNNGG 2 cut(s) 548, 824
AgsI TTSAA 2 cut(s) 263, 869
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 6 cut(s) 23, 59, 111, 159, 584, 897
AluI AGCT 6 cut(s) 23, 59, 111, 159, 584, 897
Alw21I GWGCWC 1 cut(s) 118
Alw44I GTGCAC 1 cut(s) 114
AlwNI CAGNNNCTG 1 cut(s) 284
Ama87I CYCGRG 1 cut(s) 589
AoxI GGCC 1 cut(s) 709
ApaLI GTGCAC 1 cut(s) 114
ApeKI GCWGC 5 cut(s) 156, 287, 353, 629, 715
ApoI RAATTY 1 cut(s) 218
AspA2I CCTAGG 1 cut(s) 877
AvaI CYCGRG 1 cut(s) 589
AvrII CCTAGG 1 cut(s) 877
BaeGI GKGCMC 1 cut(s) 118
BalI TGGCCA 1 cut(s) 711
BanI GGYRCC 1 cut(s) 908
BbsI GAAGAC 1 cut(s) 624
Bbv12I GWGCWC 1 cut(s) 118
BbvCI CCTCAGC 1 cut(s) 277
BbvI GCAGC 5 cut(s) 168, 274, 365, 616, 727
BccI CCATC 1 cut(s) 541
BceAI ACGGC 1 cut(s) 967
BciT130I CCWGG 1 cut(s) 12
BclI TGATCA 1 cut(s) 601
BfaI CTAG 3 cut(s) 153, 701, 878
BfmI CTRYAG 2 cut(s) 579, 642
BfuAI ACCTGC 1 cut(s) 211
BisI GCNGC 6 cut(s) 157, 288, 354, 630, 716, 912
BlnI CCTAGG 1 cut(s) 877
BlsI GCNGC 6 cut(s) 158, 289, 355, 631, 717, 913
BmcAI AGTACT 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 12
BmeT110I CYCGRG 1 cut(s) 589
BmiI GGNNCC 3 cut(s) 757, 829, 910
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 4 cut(s) 329, 431, 464, 491
BpiI GAAGAC 1 cut(s) 624
BpmI CTGGAG 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 277
BsaJI CCNNGG 2 cut(s) 588, 877
Bsc4I CCNNNNNNNGG 2 cut(s) 548, 824
Bse1I ACTGG 2 cut(s) 162, 772
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 588, 877
BseGI GGATG 3 cut(s) 272, 320, 422
BseLI CCNNNNNNNGG 2 cut(s) 548, 824
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 2 cut(s) 162, 772
BseSI GKGCMC 1 cut(s) 118
BseXI GCAGC 5 cut(s) 168, 274, 365, 616, 727
BsgI GTGCAG 3 cut(s) 372, 615, 843
BshFI GGCC 1 cut(s) 711
BshNI GGYRCC 1 cut(s) 908
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 589
BslI CCNNNNNNNGG 2 cut(s) 548, 824
BsmI GAATGC 1 cut(s) 375
BsnI GGCC 1 cut(s) 711
BsoBI CYCGRG 1 cut(s) 589
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 1 cut(s) 601
BspACI CCGC 3 cut(s) 378, 638, 912
BspANI GGCC 1 cut(s) 711
BspCNI CTCAG 1 cut(s) 290
BspLI GGNNCC 3 cut(s) 757, 829, 910
BspMI ACCTGC 1 cut(s) 211
BspT107I GGYRCC 1 cut(s) 908
BsrI ACTGG 2 cut(s) 162, 772
BssECI CCNNGG 2 cut(s) 588, 877
BssMI GATC 1 cut(s) 601
BssT1I CCWWGG 1 cut(s) 877
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 4 cut(s) 350, 401, 430, 646
Bst6I CTCTTC 2 cut(s) 106, 142
BstAPI GCANNNNNTGC 1 cut(s) 656
BstC8I GCNNGC 2 cut(s) 543, 713
BstDEI CTNAG 1 cut(s) 277
BstF5I GGATG 3 cut(s) 272, 320, 422
BstKTI GATC 1 cut(s) 604
BstMBI GATC 1 cut(s) 601
BstMWI GCNNNNNNNGC 2 cut(s) 287, 656
BstNI CCWGG 1 cut(s) 12
BstNSI RCATGY 2 cut(s) 257, 499
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 2 cut(s) 579, 642
BstSLI GKGCMC 1 cut(s) 118
BstV1I GCAGC 5 cut(s) 168, 274, 365, 616, 727
BstV2I GAAGAC 1 cut(s) 624
BsuRI GGCC 1 cut(s) 711
BtsCI GGATG 3 cut(s) 272, 320, 422
BtsIMutI CAGTG 1 cut(s) 355
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 2 cut(s) 543, 713
CaiI CAGNNNCTG 1 cut(s) 284
CsiI ACCWGGT 1 cut(s) 10
Csp6I GTAC 2 cut(s) 177, 444
CspCI CAANNNNNGTGG 2 cut(s) 346, 381
CviAII CATG 3 cut(s) 254, 496, 625
CviQI GTAC 2 cut(s) 177, 444
DdeI CTNAG 1 cut(s) 277
DpnI GATC 1 cut(s) 603
DpnII GATC 1 cut(s) 601
EaeI YGGCCR 1 cut(s) 709
Eam1104I CTCTTC 2 cut(s) 106, 142
EarI CTCTTC 2 cut(s) 106, 142
EciI GGCGGA 1 cut(s) 627
Eco130I CCWWGG 1 cut(s) 877
Eco57I CTGAAG 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 877
ErhI CCWWGG 1 cut(s) 877
FaeI CATG 3 cut(s) 257, 499, 628
FaiI YATR 7 cut(s) 182, 209, 255, 497, 614, 626, 873
FatI CATG 3 cut(s) 253, 495, 624
FbaI TGATCA 1 cut(s) 601
Fnu4HI GCNGC 6 cut(s) 157, 288, 354, 630, 716, 912
FokI GGATG 3 cut(s) 259, 307, 409
Fsp4HI GCNGC 6 cut(s) 157, 288, 354, 630, 716, 912
FspBI CTAG 3 cut(s) 153, 701, 878
GluI GCNGC 6 cut(s) 157, 288, 354, 630, 716, 912
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 1 cut(s) 711
Hin1II CATG 3 cut(s) 257, 499, 628
HincII GTYRAC 1 cut(s) 726
HindII GTYRAC 1 cut(s) 726
Hpy166II GTNNAC 3 cut(s) 116, 687, 726
Hpy188I TCNGA 2 cut(s) 142, 780
Hpy8I GTNNAC 3 cut(s) 116, 687, 726
HpyAV CCTTC 2 cut(s) 678, 924
HpyCH4III ACNGT 4 cut(s) 350, 401, 430, 646
HpyCH4IV ACGT 1 cut(s) 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 656
HpyF3I CTNAG 1 cut(s) 277
HpySE526I ACGT 1 cut(s) 392
Hsp92II CATG 3 cut(s) 257, 499, 628
Ksp22I TGATCA 1 cut(s) 601
Kzo9I GATC 1 cut(s) 601
LmnI GCTCC 6 cut(s) 108, 164, 317, 391, 419, 589
Lsp1109I GCAGC 5 cut(s) 168, 274, 365, 616, 727
LweI GCATC 4 cut(s) 329, 431, 464, 491
MabI ACCWGGT 1 cut(s) 10
MaeI CTAG 3 cut(s) 153, 701, 878
MaeII ACGT 1 cut(s) 392
MaeIII GTNAC 1 cut(s) 551
MalI GATC 1 cut(s) 603
MboI GATC 1 cut(s) 601
MboII GAAGA 6 cut(s) 93, 117, 129, 204, 426, 629
MhlI GDGCHC 1 cut(s) 118
MlsI TGGCCA 1 cut(s) 711
MluCI AATT 4 cut(s) 40, 76, 218, 263
MluNI TGGCCA 1 cut(s) 711
MmeI TCCRAC 3 cut(s) 420, 582, 822
Mox20I TGGCCA 1 cut(s) 711
MscI TGGCCA 1 cut(s) 711
MseI TTAA 5 cut(s) 6, 39, 75, 233, 945
Msp20I TGGCCA 1 cut(s) 711
MspA1I CMGCKG 1 cut(s) 914
MspR9I CCNGG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 375
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 287, 656
NdeII GATC 1 cut(s) 601
NlaIII CATG 3 cut(s) 257, 499, 628
NlaIV GGNNCC 3 cut(s) 757, 829, 910
NspI RCATGY 2 cut(s) 257, 499
PctI GAATGC 1 cut(s) 375
PkrI GCNGC 6 cut(s) 158, 289, 355, 631, 717, 913
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 3 cut(s) 757, 829, 910
PstNI CAGNNNCTG 1 cut(s) 284
RsaI GTAC 2 cut(s) 178, 445
RsaNI GTAC 2 cut(s) 177, 444
SaqAI TTAA 5 cut(s) 6, 39, 75, 233, 945
SatI GCNGC 6 cut(s) 157, 288, 354, 630, 716, 912
Sau3AI GATC 1 cut(s) 601
ScaI AGTACT 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 1 cut(s) 118
SexAI ACCWGGT 1 cut(s) 10
SfaNI GCATC 4 cut(s) 329, 431, 464, 491
SfcI CTRYAG 2 cut(s) 579, 642
Sse9I AATT 4 cut(s) 40, 76, 218, 263
SsiI CCGC 3 cut(s) 378, 638, 912
SspI AATATT 1 cut(s) 363
SspMI CTAG 3 cut(s) 153, 701, 878
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 1 cut(s) 877
TaaI ACNGT 4 cut(s) 350, 401, 430, 646
TaiI ACGT 1 cut(s) 395
TaqI TCGA 1 cut(s) 267
TasI AATT 4 cut(s) 40, 76, 218, 263
TatI WGTACW 1 cut(s) 176
TauI GCSGC 1 cut(s) 914
Tru1I TTAA 5 cut(s) 6, 39, 75, 233, 945
Tru9I TTAA 5 cut(s) 6, 39, 75, 233, 945
TscAI CASTG 1 cut(s) 355
TseI GCWGC 5 cut(s) 156, 287, 353, 629, 715
TspDTI ATGAA 4 cut(s) 6, 52, 300, 623
TspRI CASTG 1 cut(s) 355
VneI GTGCAC 1 cut(s) 114
XapI RAATTY 1 cut(s) 218
XceI RCATGY 2 cut(s) 257, 499
XmaJI CCTAGG 1 cut(s) 877
XspI CTAG 3 cut(s) 153, 701, 878
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.