pycom02g21910

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0019811
Physical Location & Seq
Forward (+)
20058883 .. 20059881
999 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g21910.3

Sequence Viewer

Length: 669 bp
ATGGCTCCAGTTTACTCTGAAGTGAAGACTTCAGCTTCCCCTACCGTATTTGCTGCCAGTTGGCAACCTGGATCCTCGTCTGCCGCTGCTACTACTATCAGTGCGCCTATTACTTTTGGAGGATCGACGGTTTCTTCTACAAATAACAACAGTCGATCTTTGTTTCGGTCATCCAATGGTGCATCCTCAACTTCCATGTTCTCATTCACGTCAACTGCACCTACTAGTGCCCCTTCACAGCCTCCATTTGGCAACTCCAATCCTGTATTTCCATTTGGTTCCCCAGGTAATAATGATCAATTGAATATGAAAGACAGTAACCAGGCATCGACACCTACAGCCCAAGGTTTTGGTCAACAATTCCAGTTTGGTCAACTGCCGATTTTAAACTCACCATCAGCCTCTGTATTCGTAGGTCTTAATAACAAAGTTGGCAAGAAAAGGCAATTTGGAGGTACACTCAAAGCCCCAGCAGCGAGTCCCTTCCAATTTGCAGGCCAACAGAACCTAACCAACCCACAGAACCCTAACCCATTTCAGGCTTCTGGTAGTTTGGGTGCGAATCAGGGGTTAGGGGGAAGCTTCTCAGTTGGCTCCAGTGGTGGTGATGGTGACAAGTCTCACCGAAGAATAATTAAAGTTAAACACAACAGGCCCCGGAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05169 map03013 map05169
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

22.89

Weight (kDa)

11.13

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019811)

Species Orthologous Gene IDs
pyrus_communis pycom02g21830 pycom02g21890 pycom02g21910
rosa_chinensis RchiOBHm_Chr1g0366041
rosa_multiflora Rmu_sc0003987.1_g000015
rosa_samantha Rh1AG335300
rosa_wichuraiana Rw1G029730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 84
AclWI GGATC 3 cut(s) 66, 79, 130
AcuI CTGAAG 2 cut(s) 15, 39
AfaI GTAC 1 cut(s) 457
AfiI CCNNNNNNNGG 2 cut(s) 248, 538
AgsI TTSAA 1 cut(s) 304
AhlI ACTAGT 1 cut(s) 224
AjiI CACGTC 1 cut(s) 210
AjnI CCWGG 3 cut(s) 67, 283, 321
AluBI AGCT 2 cut(s) 35, 582
AluI AGCT 2 cut(s) 35, 582
Alw26I GTCTC 1 cut(s) 624
AlwI GGATC 3 cut(s) 66, 79, 130
AlwNI CAGNNNCTG 1 cut(s) 404
AoxI GGCC 2 cut(s) 496, 653
ApeKI GCWGC 3 cut(s) 53, 86, 473
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 654
AsuC2I CCSGG 1 cut(s) 658
AsuHPI GGTGA 4 cut(s) 384, 614, 617, 623
BaeGI GKGCMC 1 cut(s) 232
BamHI GGATCC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 32
BbvI GCAGC 3 cut(s) 40, 73, 485
BccI CCATC 2 cut(s) 403, 602
BciT130I CCWGG 3 cut(s) 69, 285, 323
BclI TGATCA 1 cut(s) 295
BcnI CCSGG 1 cut(s) 658
BcoDI GTCTC 1 cut(s) 624
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 1 cut(s) 225
BfmI CTRYAG 1 cut(s) 336
BisI GCNGC 4 cut(s) 54, 84, 87, 474
BlsI GCNGC 4 cut(s) 55, 85, 88, 475
Bme1390I CCNGG 4 cut(s) 69, 285, 323, 658
BmgBI CACGTC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 654
BmiI GGNNCC 5 cut(s) 6, 73, 280, 595, 656
BmrFI CCNGG 4 cut(s) 69, 285, 323, 658
BmsI GCATC 2 cut(s) 191, 335
BpiI GAAGAC 1 cut(s) 32
BplI GAGNNNNNCTC 2 cut(s) 444, 476
BpmI CTGGAG 1 cut(s) 580
BpuMI CCSGG 1 cut(s) 658
BsaJI CCNNGG 3 cut(s) 283, 343, 656
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 538
Bse1I ACTGG 4 cut(s) 8, 57, 364, 597
BseBI CCWGG 3 cut(s) 69, 285, 323
BseDI CCNNGG 3 cut(s) 283, 343, 656
BseGI GGATG 2 cut(s) 170, 182
BseLI CCNNNNNNNGG 2 cut(s) 248, 538
BseMII CTCAG 1 cut(s) 600
BseNI ACTGG 4 cut(s) 8, 57, 364, 597
BseSI GKGCMC 1 cut(s) 232
BseXI GCAGC 3 cut(s) 40, 73, 485
BseYI CCCAGC 1 cut(s) 469
BsgI GTGCAG 1 cut(s) 201
BshFI GGCC 2 cut(s) 498, 655
BsiSI CCGG 1 cut(s) 658
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 2 cut(s) 248, 538
BsmAI GTCTC 1 cut(s) 624
BsmFI GGGAC 1 cut(s) 465
BsnI GGCC 2 cut(s) 498, 655
Bsp1286I GDGCHC 1 cut(s) 232
Bsp143I GATC 4 cut(s) 71, 122, 155, 295
BspACI CCGC 1 cut(s) 84
BspANI GGCC 2 cut(s) 498, 655
BspCNI CTCAG 1 cut(s) 599
BspLI GGNNCC 5 cut(s) 6, 73, 280, 595, 656
BspPI GGATC 3 cut(s) 66, 79, 130
BsrI ACTGG 4 cut(s) 8, 57, 364, 597
BssECI CCNNGG 3 cut(s) 283, 343, 656
BssMI GATC 4 cut(s) 71, 122, 155, 295
BssT1I CCWWGG 1 cut(s) 343
Bst2UI CCWGG 3 cut(s) 69, 285, 323
Bst4CI ACNGT 4 cut(s) 46, 130, 152, 317
BstC8I GCNNGC 1 cut(s) 496
BstDEI CTNAG 1 cut(s) 586
BstF5I GGATG 2 cut(s) 170, 182
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 4 cut(s) 74, 125, 158, 298
BstMAI GTCTC 1 cut(s) 624
BstMBI GATC 4 cut(s) 71, 122, 155, 295
BstMWI GCNNNNNNNGC 1 cut(s) 473
BstNI CCWGG 3 cut(s) 69, 285, 323
BstSCI CCNGG 4 cut(s) 67, 283, 321, 656
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 232
BstV1I GCAGC 3 cut(s) 40, 73, 485
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 71
BstXI CCANNNNNNTGG 1 cut(s) 350
BstYI RGATCY 1 cut(s) 71
BsuRI GGCC 2 cut(s) 498, 655
BtrI CACGTC 1 cut(s) 210
BtsCI GGATG 2 cut(s) 170, 182
BtsIMutI CAGTG 2 cut(s) 106, 604
Cac8I GCNNGC 1 cut(s) 496
CaiI CAGNNNCTG 1 cut(s) 404
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 654
Csp6I GTAC 1 cut(s) 456
CviAII CATG 1 cut(s) 196
CviQI GTAC 1 cut(s) 456
DdeI CTNAG 1 cut(s) 586
DpnI GATC 4 cut(s) 73, 124, 157, 297
DpnII GATC 4 cut(s) 71, 122, 155, 295
DraI TTTAAA 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 343
Eco57I CTGAAG 2 cut(s) 15, 39
EcoO109I RGGNCCY 1 cut(s) 654
EcoRII CCWGG 3 cut(s) 67, 283, 321
EcoT14I CCWWGG 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 343
FaeI CATG 1 cut(s) 199
FaiI YATR 2 cut(s) 197, 308
FaqI GGGAC 1 cut(s) 465
FatI CATG 1 cut(s) 195
FbaI TGATCA 1 cut(s) 295
Fnu4HI GCNGC 4 cut(s) 54, 84, 87, 474
FokI GGATG 2 cut(s) 157, 169
Fsp4HI GCNGC 4 cut(s) 54, 84, 87, 474
FspBI CTAG 1 cut(s) 225
GlaI GCGC 1 cut(s) 105
GluI GCNGC 4 cut(s) 54, 84, 87, 474
GsaI CCCAGC 1 cut(s) 473
GsuI CTGGAG 1 cut(s) 580
HaeIII GGCC 2 cut(s) 498, 655
HapII CCGG 1 cut(s) 658
HhaI GCGC 1 cut(s) 106
Hin1II CATG 1 cut(s) 199
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HincII GTYRAC 3 cut(s) 213, 356, 374
HindII GTYRAC 3 cut(s) 213, 356, 374
HindIII AAGCTT 1 cut(s) 580
HinfI GANTC 2 cut(s) 478, 562
HpaII CCGG 1 cut(s) 658
HphI GGTGA 4 cut(s) 384, 614, 617, 623
Hpy166II GTNNAC 5 cut(s) 13, 213, 356, 374, 458
Hpy188I TCNGA 1 cut(s) 19
Hpy8I GTNNAC 5 cut(s) 13, 213, 356, 374, 458
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 2 cut(s) 243, 493
HpyCH4III ACNGT 4 cut(s) 46, 130, 152, 317
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 3 cut(s) 182, 218, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 473
HpyF3I CTNAG 1 cut(s) 586
HpySE526I ACGT 1 cut(s) 209
Hsp92II CATG 1 cut(s) 199
HspAI GCGC 1 cut(s) 104
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 4 cut(s) 71, 122, 155, 295
LmnI GCTCC 2 cut(s) 10, 599
Lsp1109I GCAGC 3 cut(s) 40, 73, 485
LweI GCATC 2 cut(s) 191, 335
MaeI CTAG 1 cut(s) 225
MaeII ACGT 1 cut(s) 209
MaeIII GTNAC 2 cut(s) 317, 611
MalI GATC 4 cut(s) 73, 124, 157, 297
MboI GATC 4 cut(s) 71, 122, 155, 295
MboII GAAGA 3 cut(s) 37, 126, 639
MfeI CAATTG 1 cut(s) 299
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 5 cut(s) 299, 359, 446, 488, 633
MlyI GAGTC 1 cut(s) 487
MnlI CCTC 6 cut(s) 85, 113, 196, 252, 412, 446
MseI TTAA 4 cut(s) 386, 420, 636, 642
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 1 cut(s) 658
MspR9I CCNGG 4 cut(s) 69, 285, 323, 658
MunI CAATTG 1 cut(s) 299
MvaI CCWGG 3 cut(s) 69, 285, 323
MwoI GCNNNNNNNGC 1 cut(s) 473
NciI CCSGG 1 cut(s) 658
NdeII GATC 4 cut(s) 71, 122, 155, 295
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 5 cut(s) 6, 73, 280, 595, 656
NmuCI GTSAC 1 cut(s) 611
PfeI GAWTC 1 cut(s) 562
PkrI GCNGC 4 cut(s) 55, 85, 88, 475
PleI GAGTC 1 cut(s) 486
PpsI GAGTC 1 cut(s) 486
Psp6I CCWGG 3 cut(s) 67, 283, 321
PspFI CCCAGC 1 cut(s) 469
PspGI CCWGG 3 cut(s) 67, 283, 321
PspN4I GGNNCC 5 cut(s) 6, 73, 280, 595, 656
PspPI GGNCC 1 cut(s) 654
PstNI CAGNNNCTG 1 cut(s) 404
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 1 cut(s) 457
RsaNI GTAC 1 cut(s) 456
SaqAI TTAA 4 cut(s) 386, 420, 636, 642
SatI GCNGC 4 cut(s) 54, 84, 87, 474
Sau3AI GATC 4 cut(s) 71, 122, 155, 295
Sau96I GGNCC 1 cut(s) 654
SchI GAGTC 1 cut(s) 487
ScrFI CCNGG 4 cut(s) 69, 285, 323, 658
SduI GDGCHC 1 cut(s) 232
SfaNI GCATC 2 cut(s) 191, 335
SfcI CTRYAG 1 cut(s) 336
SpeI ACTAGT 1 cut(s) 224
Sse9I AATT 5 cut(s) 299, 359, 446, 488, 633
SsiI CCGC 1 cut(s) 84
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 4 cut(s) 67, 283, 321, 656
StyI CCWWGG 1 cut(s) 343
TaaI ACNGT 4 cut(s) 46, 130, 152, 317
TaiI ACGT 1 cut(s) 212
TaqI TCGA 3 cut(s) 125, 154, 329
TaqII GACCGA 1 cut(s) 156
TasI AATT 5 cut(s) 299, 359, 446, 488, 633
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 1 cut(s) 562
Tru1I TTAA 4 cut(s) 386, 420, 636, 642
Tru9I TTAA 4 cut(s) 386, 420, 636, 642
TscAI CASTG 2 cut(s) 106, 604
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 3 cut(s) 53, 86, 473
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 1 cut(s) 323
TspRI CASTG 2 cut(s) 106, 604
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.