pycom02g21890

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0019811
Physical Location & Seq
Forward (+)
20052523 .. 20052972
450 bp
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UTR
Exon/CDS
Intron
pycom02g21890.1

Sequence Viewer

Length: 450 bp
ATGTTCTCATTCACTTCAACCGCACCTACTAGTGCCCCGTCACAGCCTCCATTTGGCAACCCCAATCCTGTATTTCCATTTGGTTCCCCAGGTAATAATGATCAAATGAATATGGAAGACAGTATGGCCGAAGACACTAACCAGGCATCGACACCTACAGCCCCAGGTTTTGGTCAACATTTCCAGTTTGGTCAACAGCCGATTTTAAACTCACAATCTGCCTCTGTATTCGGAGGTACACCCACAGCCCCAGCAGCAAGTCCCTTCCAATTTGCAGGCCAACAGAACCTAACCAACCCACAGAACCCTAACCCATTTCAGGCTTCTGGTAGTTTGGGTGCGAATCAGGGGTTAGGGGGAAGCTTCTCAGTTGGCTCCAGTGGTGGTGATGGTGACAAGTCTCACCGAAGAATAATTAAAGTTAAACACAACAGGCCCCGGAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05169 map03013 map05169
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

15.54

Weight (kDa)

9.4

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019811)

Species Orthologous Gene IDs
pyrus_communis pycom02g21830 pycom02g21890 pycom02g21910
rosa_chinensis RchiOBHm_Chr1g0366041
rosa_multiflora Rmu_sc0003987.1_g000015
rosa_samantha Rh1AG335300
rosa_wichuraiana Rw1G029730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 170
AciI CCGC 1 cut(s) 21
AcoI YGGCCR 1 cut(s) 126
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 3 cut(s) 53, 170, 319
AgsI TTSAA 1 cut(s) 18
AhlI ACTAGT 1 cut(s) 29
AjnI CCWGG 3 cut(s) 88, 141, 163
AluBI AGCT 1 cut(s) 363
AluI AGCT 1 cut(s) 363
Alw26I GTCTC 1 cut(s) 405
AoxI GGCC 3 cut(s) 126, 277, 434
ApeKI GCWGC 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 435
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 3 cut(s) 395, 398, 404
BaeGI GKGCMC 1 cut(s) 37
BbsI GAAGAC 2 cut(s) 123, 138
BbvI GCAGC 1 cut(s) 266
BccI CCATC 1 cut(s) 383
BciT130I CCWGG 3 cut(s) 90, 143, 165
BclI TGATCA 1 cut(s) 100
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 1 cut(s) 405
BcuI ACTAGT 1 cut(s) 29
BfaI CTAG 1 cut(s) 30
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 4 cut(s) 90, 143, 165, 439
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 3 cut(s) 85, 376, 437
BmrFI CCNGG 4 cut(s) 90, 143, 165, 439
BmsI GCATC 1 cut(s) 155
BpiI GAAGAC 2 cut(s) 123, 138
BpmI CTGGAG 1 cut(s) 361
BpuMI CCSGG 1 cut(s) 439
BsaJI CCNNGG 3 cut(s) 88, 163, 437
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 170, 319
Bse1I ACTGG 2 cut(s) 184, 378
BseBI CCWGG 3 cut(s) 90, 143, 165
BseDI CCNNGG 3 cut(s) 88, 163, 437
BseLI CCNNNNNNNGG 3 cut(s) 53, 170, 319
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 2 cut(s) 184, 378
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 1 cut(s) 266
BseYI CCCAGC 1 cut(s) 250
BshFI GGCC 3 cut(s) 128, 279, 436
BsiSI CCGG 1 cut(s) 439
BslFI GGGAC 1 cut(s) 246
BslI CCNNNNNNNGG 3 cut(s) 53, 170, 319
BsmAI GTCTC 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 246
BsnI GGCC 3 cut(s) 128, 279, 436
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 1 cut(s) 21
BspANI GGCC 3 cut(s) 128, 279, 436
BspCNI CTCAG 1 cut(s) 380
BspLI GGNNCC 3 cut(s) 85, 376, 437
BsrI ACTGG 2 cut(s) 184, 378
BssECI CCNNGG 3 cut(s) 88, 163, 437
BssMI GATC 1 cut(s) 100
Bst2UI CCWGG 3 cut(s) 90, 143, 165
Bst4CI ACNGT 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 367
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 3 cut(s) 90, 143, 165
BstSCI CCNGG 4 cut(s) 88, 141, 163, 437
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 266
BstV2I GAAGAC 2 cut(s) 123, 138
BsuRI GGCC 3 cut(s) 128, 279, 436
BtsIMutI CAGTG 1 cut(s) 385
Cac8I GCNNGC 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 435
Csp6I GTAC 1 cut(s) 237
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 1 cut(s) 367
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
DraI TTTAAA 1 cut(s) 207
EaeI YGGCCR 1 cut(s) 126
EcoO109I RGGNCCY 1 cut(s) 435
EcoRII CCWGG 3 cut(s) 88, 141, 163
FaiI YATR 2 cut(s) 113, 125
FaqI GGGAC 1 cut(s) 246
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 1 cut(s) 30
GluI GCNGC 1 cut(s) 255
GsaI CCCAGC 1 cut(s) 254
GsuI CTGGAG 1 cut(s) 361
HaeIII GGCC 3 cut(s) 128, 279, 436
HapII CCGG 1 cut(s) 439
HincII GTYRAC 2 cut(s) 176, 194
HindII GTYRAC 2 cut(s) 176, 194
HindIII AAGCTT 1 cut(s) 361
HinfI GANTC 1 cut(s) 343
HpaII CCGG 1 cut(s) 439
HphI GGTGA 3 cut(s) 395, 398, 404
Hpy166II GTNNAC 3 cut(s) 176, 194, 239
Hpy188I TCNGA 1 cut(s) 233
Hpy8I GTNNAC 3 cut(s) 176, 194, 239
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 1 cut(s) 367
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 1 cut(s) 380
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 1 cut(s) 155
MaeI CTAG 1 cut(s) 30
MaeIII GTNAC 2 cut(s) 39, 392
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 3 cut(s) 128, 143, 420
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 2 cut(s) 269, 414
MnlI CCTC 3 cut(s) 57, 227, 232
MseI TTAA 3 cut(s) 206, 417, 423
MspI CCGG 1 cut(s) 439
MspR9I CCNGG 4 cut(s) 90, 143, 165, 439
MvaI CCWGG 3 cut(s) 90, 143, 165
MwoI GCNNNNNNNGC 1 cut(s) 254
NciI CCSGG 1 cut(s) 439
NdeII GATC 1 cut(s) 100
NlaIV GGNNCC 3 cut(s) 85, 376, 437
NmuCI GTSAC 2 cut(s) 39, 392
PfeI GAWTC 1 cut(s) 343
PflMI CCANNNNNTGG 1 cut(s) 170
PkrI GCNGC 1 cut(s) 256
Psp6I CCWGG 3 cut(s) 88, 141, 163
PspFI CCCAGC 1 cut(s) 250
PspGI CCWGG 3 cut(s) 88, 141, 163
PspN4I GGNNCC 3 cut(s) 85, 376, 437
PspPI GGNCC 1 cut(s) 435
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SaqAI TTAA 3 cut(s) 206, 417, 423
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 435
ScrFI CCNGG 4 cut(s) 90, 143, 165, 439
SduI GDGCHC 1 cut(s) 37
SetI ASST 7 cut(s) 28, 94, 157, 169, 238, 291, 365
SfaNI GCATC 1 cut(s) 155
SfcI CTRYAG 1 cut(s) 156
SpeI ACTAGT 1 cut(s) 29
Sse9I AATT 2 cut(s) 269, 414
SsiI CCGC 1 cut(s) 21
SspMI CTAG 1 cut(s) 30
StyD4I CCNGG 4 cut(s) 88, 141, 163, 437
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 1 cut(s) 149
TasI AATT 2 cut(s) 269, 414
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 3 cut(s) 206, 417, 423
Tru9I TTAA 3 cut(s) 206, 417, 423
TscAI CASTG 1 cut(s) 385
TseFI GTSAC 2 cut(s) 39, 392
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 2 cut(s) 39, 392
TspDTI ATGAA 1 cut(s) 122
TspRI CASTG 1 cut(s) 385
Van91I CCANNNNNTGG 1 cut(s) 170
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.