Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0019242

Physical Location & Seq

Genomic Coordinates Forward (+)

1236242 .. 1236849

Gene Structure 608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g01680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCCAATTCCAGATAATAAAGAGAAGAGCCAGACATCTGTCATACGCGTGGAATCATTACTATTAGGTACCTCTATCCTTGTTAATGTTGTCGGAAGTGCTGCTCTCTGTCTCGGTTTTGGACTCTCATTTAGCTATGAAGAACTACAAGTAGCTAAAAATGGATTTACGGAAGAATTAGGAAAGGGTGTATTTCGAATGGTTTCAAAGGGGGATGCAAATTGGTTCTGGTGTCGAAGTGGCGGTGAAGAGGCTAAACTTGCTGGAGAACAATTTAGAAACAATAAAATAACAGAAATACAGAACCGAAATACTTATACTTTACTATTCCAAAATACTTTATTTCCGTCCCACTCGTGTGCTTGTGGTTCTACAACGTTTGCTCGACCAGGATACAACTACCTAATTCTACAACCCGCACTGGATTATAGAACTCTAGCGAATTGCTTTGTGTGTTTACTCTCTGAAAATTTTGTACAGAAGACAAGATGGAAGAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

168

Amino Acids

18.75

Weight (kDa)

8.94

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019242)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39761
prunus_persica	Prupe.4G270900_v2.0.a1
pyrus_communis	pycom01g03940 pycom03g01680 pycom13g24850
rosa_multiflora	Rmu_sc0000235.1_g000028 Rmu_sc0000365.1_g000044 Rmu_sc0006558.1_g000026

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	68
AccB1I	GGYRCC	1 cut(s)	68
AccII	CGCG	1 cut(s)	48
AciI	CCGC	2 cut(s)	243, 417
AclI	AACGTT	1 cut(s)	377
AcsI	RAATTY	1 cut(s)	469
AfaI	GTAC	2 cut(s)	70, 477
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	207
AjnI	CCWGG	1 cut(s)	388
AleI	CACNNNNGTG	1 cut(s)	357
AluBI	AGCT	2 cut(s)	135, 155
AluI	AGCT	2 cut(s)	135, 155
Alw26I	GTCTC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	469
Asp700I	GAANNNNTTC	1 cut(s)	202
Asp718I	GGTACC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	257
AsuII	TTCGAA	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	68
BauI	CACGAG	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	488
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	1 cut(s)	483
BciT130I	CCWGG	1 cut(s)	390
BciVI	GTATCC	1 cut(s)	386
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	437
BfuI	GTATCC	1 cut(s)	386
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	390
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	1 cut(s)	205
BoxI	GACNNNNGTC	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	488
BpmI	CTGGAG	1 cut(s)	285
Bpu14I	TTCGAA	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	390
BseGI	GGATG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	426
BseXI	GCAGC	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	48
BshNI	GGYRCC	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	334
Bsp119I	TTCGAA	1 cut(s)	196
Bsp1407I	TGTACA	1 cut(s)	475
BspACI	CCGC	2 cut(s)	243, 417
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	70
BspQI	GCTCTTC	1 cut(s)	20
BspT104I	TTCGAA	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	426
BssSI	CACGAG	1 cut(s)	355
Bst2BI	CACGAG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	390
Bst6I	CTCTTC	2 cut(s)	20, 243
BstAUI	TGTACA	1 cut(s)	475
BstBI	TTCGAA	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	220
BstFNI	CGCG	1 cut(s)	48
BstMAI	GTCTC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	390
BstPAI	GACNNNNGTC	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	388
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	488
BsuI	GTATCC	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	69, 476
CviJI	RGCY	4 cut(s)	30, 135, 155, 254
CviKI_1	RGCY	4 cut(s)	30, 135, 155, 254
CviQI	GTAC	2 cut(s)	69, 476
Eam1104I	CTCTTC	2 cut(s)	20, 243
EarI	CTCTTC	2 cut(s)	20, 243
EcoRII	CCWGG	1 cut(s)	388
FaiI	YATR	4 cut(s)	44, 138, 318, 429
FaqI	GGGAC	1 cut(s)	334
FauI	CCCGC	1 cut(s)	424
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	1 cut(s)	102
GsuI	CTGGAG	1 cut(s)	285
HinfI	GANTC	2 cut(s)	53, 123
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	458
Hpy188I	TCNGA	2 cut(s)	95, 466
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	1 cut(s)	458
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	1 cut(s)	218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpySE526I	ACGT	1 cut(s)	377
KpnI	GGTACC	1 cut(s)	72
LguI	GCTCTTC	1 cut(s)	20
LpnPI	CCDG	7 cut(s)	24, 44, 214, 249, 375, 402, 407
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	1 cut(s)	377
MboII	GAAGA	5 cut(s)	37, 152, 185, 260, 493
MluCI	AATT	7 cut(s)	6, 176, 220, 272, 405, 442, 469
MluI	ACGCGT	1 cut(s)	46
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	2 cut(s)	82, 244
MroXI	GAANNNNTTC	1 cut(s)	202
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	2 cut(s)	47, 357
MspR9I	CCNGG	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	390
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	260
NlaIV	GGNNCC	1 cut(s)	70
NspV	TTCGAA	1 cut(s)	196
OliI	CACNNNNGTG	1 cut(s)	357
PciSI	GCTCTTC	1 cut(s)	20
PdmI	GAANNNNTTC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
PshAI	GACNNNNGTC	1 cut(s)	38
Psp1406I	AACGTT	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	70
RsaI	GTAC	2 cut(s)	70, 477
RsaNI	GTAC	2 cut(s)	69, 476
RseI	CAYNNNNRTG	2 cut(s)	47, 357
SapI	GCTCTTC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	1 cut(s)	102
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	390
SetI	ASST	6 cut(s)	70, 74, 137, 157, 380, 405
SfaNI	GCATC	1 cut(s)	205
SfuI	TTCGAA	1 cut(s)	196
SmiMI	CAYNNNNRTG	2 cut(s)	47, 357
Sse9I	AATT	7 cut(s)	6, 176, 220, 272, 405, 442, 469
SsiI	CCGC	2 cut(s)	243, 417
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	1 cut(s)	388
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	3 cut(s)	196, 235, 385
TasI	AATT	7 cut(s)	6, 176, 220, 272, 405, 442, 469
TatI	WGTACW	1 cut(s)	475
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	426
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	153
TspGWI	ACGGA	2 cut(s)	185, 336
TspRI	CASTG	1 cut(s)	426
XapI	RAATTY	1 cut(s)	469
XmnI	GAANNNNTTC	1 cut(s)	202
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.