Rmu_sc0000365.1_g000044

Zinc knuckle family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000365.1
OG0019242
Physical Location & Seq
Reverse (-)
172176 .. 172784
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000365.1_g000044.1.cds

Sequence Viewer

Length: 609 bp
atgcttaaagaactcaaagctgaaccgagtagaattgcagtcatccatgcccacgaatactcctcagactcctcctctgatagtgactctaatacaatttctgagataaatcaagcatttcacgacctccaattacataggatagttcatccaaagaaaacaaatttaaaaaattggacagaacgccctttaccattagatattcaacccactaattatcccagtaatcagttttcagtctcttccgataaaacttatgaatggaatattgataatttatcagaacaagaaatattaaacaaattacatcacatgtccatggcagccaatagttatgtcaccaatcataatttcagccagcctgaaattattgatatcctctccacaggattcacaggaatgcttcattcctggtgggagaaacatctcactcctgattccagagcagccattaaacaagcagttaaacatgacgaagatggaattccgatctttgatgaacacgccggaatgggaatttctgatgctgtcaatactttattttatacaattattctccacttccgctcggtttctggtatcagagccgtaagagtagtgtatatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MP RVP zf-CCHC

Protein Analysis

202

Amino Acids

23.03

Weight (kDa)

5.86

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019242)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39761
prunus_persica Prupe.4G270900_v2.0.a1
pyrus_communis pycom01g03940 pycom03g01680 pycom13g24850
rosa_multiflora Rmu_sc0000235.1_g000028 Rmu_sc0000365.1_g000044 Rmu_sc0006558.1_g000026

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 567
AciI CCGC 1 cut(s) 565
AcsI RAATTY 3 cut(s) 163, 483, 516
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 1 cut(s) 206
AjnI CCWGG 1 cut(s) 410
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 244
ApeKI GCWGC 2 cut(s) 323, 446
ApoI RAATTY 3 cut(s) 163, 483, 516
AsuHPI GGTGA 1 cut(s) 331
BbvI GCAGC 2 cut(s) 335, 458
BccI CCATC 1 cut(s) 473
BceAI ACGGC 1 cut(s) 572
BciT130I CCWGG 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 244
BisI GCNGC 2 cut(s) 324, 447
BlsI GCNGC 2 cut(s) 325, 448
Bme1390I CCNGG 1 cut(s) 412
BmrFI CCNGG 1 cut(s) 412
BmrI ACTGGG 1 cut(s) 216
BmsI GCATC 1 cut(s) 514
BmuI ACTGGG 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 318
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bse1I ACTGG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 412
BseDI CCNNGG 1 cut(s) 318
BseGI GGATG 2 cut(s) 42, 148
BseMII CTCAG 2 cut(s) 78, 93
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 3 cut(s) 52, 61, 64
BseXI GCAGC 2 cut(s) 335, 458
BsiSI CCGG 1 cut(s) 507
BsmAI GTCTC 1 cut(s) 244
BsmI GAATGC 1 cut(s) 405
Bsp143I GATC 1 cut(s) 489
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 1 cut(s) 565
BspCNI CTCAG 2 cut(s) 77, 94
BsrBI CCGCTC 1 cut(s) 567
BsrI ACTGG 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 1 cut(s) 489
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 412
Bst6I CTCTTC 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 359
BstDEI CTNAG 2 cut(s) 64, 102
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 2 cut(s) 42, 148
BstKTI GATC 1 cut(s) 492
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 1 cut(s) 489
BstNI CCWGG 1 cut(s) 412
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 410
BstV1I GCAGC 2 cut(s) 335, 458
BtgI CCRYGG 1 cut(s) 318
BtsCI GGATG 2 cut(s) 42, 148
Cac8I GCNNGC 1 cut(s) 359
CviAII CATG 4 cut(s) 47, 313, 319, 470
CviJI RGCY 6 cut(s) 20, 326, 357, 361, 449, 587
CviKI_1 RGCY 6 cut(s) 20, 326, 357, 361, 449, 587
DdeI CTNAG 2 cut(s) 64, 102
DpnI GATC 1 cut(s) 491
DpnII GATC 1 cut(s) 489
DraI TTTAAA 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 318
Eco32I GATATC 1 cut(s) 376
EcoRI GAATTC 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 410
EcoRV GATATC 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 4 cut(s) 50, 316, 322, 473
FatI CATG 4 cut(s) 46, 312, 318, 469
Fnu4HI GCNGC 2 cut(s) 324, 447
FokI GGATG 2 cut(s) 29, 135
Fsp4HI GCNGC 2 cut(s) 324, 447
GluI GCNGC 2 cut(s) 324, 447
HapII CCGG 1 cut(s) 507
Hin1II CATG 4 cut(s) 50, 316, 322, 473
HinfI GANTC 4 cut(s) 68, 86, 390, 437
HpaII CCGG 1 cut(s) 507
HphI GGTGA 1 cut(s) 331
Hpy188I TCNGA 8 cut(s) 67, 79, 103, 247, 283, 489, 523, 584
Hpy188III TCNNGA 3 cut(s) 122, 434, 441
HpyCH4V TGCA 1 cut(s) 38
HpyF3I CTNAG 2 cut(s) 64, 102
Hsp92II CATG 4 cut(s) 50, 316, 322, 473
Kzo9I GATC 1 cut(s) 489
Lsp1109I GCAGC 2 cut(s) 335, 458
LweI GCATC 1 cut(s) 514
MaeIII GTNAC 2 cut(s) 83, 337
MalI GATC 1 cut(s) 491
MbiI CCGCTC 1 cut(s) 567
MboI GATC 1 cut(s) 489
MboII GAAGA 2 cut(s) 234, 488
MlyI GAGTC 2 cut(s) 62, 80
MnlI CCTC 5 cut(s) 73, 82, 85, 137, 389
MseI TTAA 5 cut(s) 6, 167, 296, 453, 465
MslI CAYNNNNRTG 2 cut(s) 317, 398
MspI CCGG 1 cut(s) 507
MspR9I CCNGG 1 cut(s) 412
Mva1269I GAATGC 1 cut(s) 405
MvaI CCWGG 1 cut(s) 412
NcoI CCATGG 1 cut(s) 318
NdeII GATC 1 cut(s) 489
NlaIII CATG 4 cut(s) 50, 316, 322, 473
NmuCI GTSAC 2 cut(s) 83, 337
NspI RCATGY 1 cut(s) 316
PciI ACATGT 1 cut(s) 312
PctI GAATGC 1 cut(s) 405
PfeI GAWTC 2 cut(s) 390, 437
PkrI GCNGC 2 cut(s) 325, 448
PleI GAGTC 2 cut(s) 62, 80
PpsI GAGTC 2 cut(s) 62, 80
PscI ACATGT 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 410
PspGI CCWGG 1 cut(s) 410
PsrI GAACNNNNNNTAC 2 cut(s) 174, 206
RseI CAYNNNNRTG 2 cut(s) 317, 398
SaqAI TTAA 5 cut(s) 6, 167, 296, 453, 465
SatI GCNGC 2 cut(s) 324, 447
Sau3AI GATC 1 cut(s) 489
SchI GAGTC 2 cut(s) 62, 80
ScrFI CCNGG 1 cut(s) 412
SetI ASST 2 cut(s) 22, 129
SfaNI GCATC 1 cut(s) 514
SmiMI CAYNNNNRTG 2 cut(s) 317, 398
SsiI CCGC 1 cut(s) 565
SspI AATATT 2 cut(s) 268, 294
StyD4I CCNGG 1 cut(s) 410
StyI CCWWGG 1 cut(s) 318
TfiI GAWTC 2 cut(s) 390, 437
Tru1I TTAA 5 cut(s) 6, 167, 296, 453, 465
Tru9I TTAA 5 cut(s) 6, 167, 296, 453, 465
TseFI GTSAC 2 cut(s) 83, 337
TseI GCWGC 2 cut(s) 323, 446
Tsp45I GTSAC 2 cut(s) 83, 337
TspDTI ATGAA 4 cut(s) 137, 273, 395, 513
XapI RAATTY 3 cut(s) 163, 483, 516
XceI RCATGY 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.