Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006558.1

Orthogroup ID

OG0019242

Physical Location & Seq

Genomic Coordinates Reverse (-)

126993 .. 133254

Gene Structure 6262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006558.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgaatggatccgcccctgcccatagatcctcttccgactcctccttctccggtagtgattctgatacaatttcccaaatcaatcaaacatttcatgaactccaattacatagaatcgttcatccaaagaaacagcctttccaaaattggacagaacgccctttaccattagatattcaacccactacttatcccagttatcaattttcagtctcttccgataaaacctatgaatggaacattgataatttatccgaacaggaactcttaaataaattacatcacatgtccatggcagccaatagctacgtcaccaatcataatttcagccagcctgaaattattgatattctctctacaggattcacaggaatgcttcattcctggtgggaaaaacatctcactcctgattcaagagcagccattaaacaagcagctaagcatgacgaagatggaattccaatctttgatgaacacattgtcaagagctccagtcactccaatgccaccccaaacgacatccacttcccagtcactccaatgcccacccaaacgacatccacttcccagtcacaacctaagtccctcaagtcacattcctcttccaaatccaaggggaaaacaaagtcaacaaaatcagatacatcctccaagttagaagagttgaaagagttagcaaaaaggctcttagcacaagcagctgatctcagtaatgatgatgatgaatctgaagaagaagaagaaatttcttcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MP RVP zf-CCHC

Protein Analysis

251

Amino Acids

28.12

Weight (kDa)

5.55

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019242)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39761
prunus_persica	Prupe.4G270900_v2.0.a1
pyrus_communis	pycom01g03940 pycom03g01680 pycom13g24850
rosa_multiflora	Rmu_sc0000235.1_g000028 Rmu_sc0000365.1_g000044 Rmu_sc0006558.1_g000026

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	12
AclWI	GGATC	3 cut(s)	3, 16, 21
AcsI	RAATTY	2 cut(s)	456, 744
AcuI	CTGAAG	1 cut(s)	750
AfiI	CCNNNNNNNGG	1 cut(s)	234
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	3 cut(s)	179, 414, 667
AjnI	CCWGG	1 cut(s)	383
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	4 cut(s)	306, 437, 489, 701
AluI	AGCT	4 cut(s)	306, 437, 489, 701
Alw21I	GWGCWC	1 cut(s)	491
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	3 cut(s)	3, 16, 21
ApeKI	GCWGC	4 cut(s)	296, 419, 434, 698
ApoI	RAATTY	2 cut(s)	456, 744
AsuHPI	GGTGA	1 cut(s)	304
BamHI	GGATCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	491
Bbv12I	GWGCWC	1 cut(s)	491
BbvI	GCAGC	4 cut(s)	308, 431, 446, 710
BccI	CCATC	1 cut(s)	446
BciT130I	CCWGG	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	217
BfmI	CTRYAG	1 cut(s)	357
BisI	GCNGC	4 cut(s)	297, 420, 435, 699
BlpI	GCTNAGC	1 cut(s)	438
BlsI	GCNGC	4 cut(s)	298, 421, 436, 700
Bme1390I	CCNGG	1 cut(s)	385
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	385
BmrI	ACTGGG	3 cut(s)	189, 524, 562
BmuI	ACTGGG	3 cut(s)	189, 524, 562
BpmI	CTGGAG	1 cut(s)	475
Bpu1102I	GCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	572
BsaJI	CCNNGG	2 cut(s)	291, 612
BsaWI	WCCGGW	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse1I	ACTGG	4 cut(s)	195, 492, 530, 568
BseBI	CCWGG	1 cut(s)	385
BseDI	CCNNGG	2 cut(s)	291, 612
BseGI	GGATG	4 cut(s)	121, 519, 557, 644
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	721
BseNI	ACTGG	4 cut(s)	195, 492, 530, 568
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	4 cut(s)	308, 431, 446, 710
BsiHKAI	GWGCWC	1 cut(s)	491
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	568
BsmI	GAATGC	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp143I	GATC	3 cut(s)	8, 26, 703
Bsp1720I	GCTNAGC	1 cut(s)	438
Bsp19I	CCATGG	1 cut(s)	291
BspACI	CCGC	1 cut(s)	12
BspCNI	CTCAG	1 cut(s)	720
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	10
BspPI	GGATC	3 cut(s)	3, 16, 21
BsrI	ACTGG	4 cut(s)	195, 492, 530, 568
BssECI	CCNNGG	2 cut(s)	291, 612
BssMI	GATC	3 cut(s)	8, 26, 703
BssT1I	CCWWGG	2 cut(s)	291, 612
Bst2UI	CCWGG	1 cut(s)	385
Bst6I	CTCTTC	4 cut(s)	37, 220, 607, 654
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	4 cut(s)	438, 579, 688, 707
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	4 cut(s)	121, 519, 557, 644
BstKTI	GATC	3 cut(s)	11, 29, 706
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	3 cut(s)	8, 26, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	698
BstNI	CCWGG	1 cut(s)	385
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	383
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	4 cut(s)	308, 431, 446, 710
BstX2I	RGATCY	2 cut(s)	8, 26
BstYI	RGATCY	2 cut(s)	8, 26
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	4 cut(s)	121, 519, 557, 644
Cac8I	GCNNGC	1 cut(s)	332
CciI	TCATGA	1 cut(s)	94
CviAII	CATG	4 cut(s)	95, 286, 292, 443
DdeI	CTNAG	4 cut(s)	438, 579, 688, 707
DpnI	GATC	3 cut(s)	10, 28, 705
DpnII	GATC	3 cut(s)	8, 26, 703
Eam1104I	CTCTTC	4 cut(s)	37, 220, 607, 654
EarI	CTCTTC	4 cut(s)	37, 220, 607, 654
Ecl136II	GAGCTC	1 cut(s)	489
Eco130I	CCWWGG	2 cut(s)	291, 612
Eco24I	GRGCYC	1 cut(s)	491
Eco53kI	GAGCTC	1 cut(s)	489
Eco57I	CTGAAG	1 cut(s)	750
EcoICRI	GAGCTC	1 cut(s)	489
EcoRI	GAATTC	1 cut(s)	456
EcoRII	CCWGG	1 cut(s)	383
EcoT14I	CCWWGG	2 cut(s)	291, 612
EcoT38I	GRGCYC	1 cut(s)	491
ErhI	CCWWGG	2 cut(s)	291, 612
FaeI	CATG	4 cut(s)	98, 289, 295, 446
FaiI	YATR	8 cut(s)	24, 96, 111, 231, 287, 293, 321, 444
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	4 cut(s)	94, 285, 291, 442
Fnu4HI	GCNGC	4 cut(s)	297, 420, 435, 699
FokI	GGATG	4 cut(s)	108, 506, 544, 631
FriOI	GRGCYC	1 cut(s)	491
Fsp4HI	GCNGC	4 cut(s)	297, 420, 435, 699
GluI	GCNGC	4 cut(s)	297, 420, 435, 699
GsuI	CTGGAG	1 cut(s)	475
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	4 cut(s)	98, 289, 295, 446
HincII	GTYRAC	1 cut(s)	630
HindII	GTYRAC	1 cut(s)	630
HinfI	GANTC	6 cut(s)	38, 59, 114, 363, 410, 725
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	630
Hpy188I	TCNGA	6 cut(s)	37, 64, 220, 256, 640, 730
Hpy188III	TCNNGA	5 cut(s)	95, 407, 414, 484, 753
Hpy8I	GTNNAC	1 cut(s)	630
HpyAV	CCTTC	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	309
HpyF10VI	GCNNNNNNNGC	1 cut(s)	698
HpyF3I	CTNAG	4 cut(s)	438, 579, 688, 707
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	4 cut(s)	98, 289, 295, 446
Kzo9I	GATC	3 cut(s)	8, 26, 703
LmnI	GCTCC	1 cut(s)	494
Lsp1109I	GCAGC	4 cut(s)	308, 431, 446, 710
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	5 cut(s)	310, 494, 532, 570, 591
MalI	GATC	3 cut(s)	10, 28, 705
MboI	GATC	3 cut(s)	8, 26, 703
MflI	RGATCY	2 cut(s)	8, 26
MhlI	GDGCHC	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	5 cut(s)	40, 52, 596, 610, 658
MseI	TTAA	2 cut(s)	269, 426
MslI	CAYNNNNRTG	4 cut(s)	290, 371, 501, 539
MspA1I	CMGCKG	1 cut(s)	701
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	385
Mva1269I	GAATGC	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	385
MwoI	GCNNNNNNNGC	1 cut(s)	698
NcoI	CCATGG	1 cut(s)	291
NdeII	GATC	3 cut(s)	8, 26, 703
NlaIII	CATG	4 cut(s)	98, 289, 295, 446
NlaIV	GGNNCC	1 cut(s)	10
NmuCI	GTSAC	5 cut(s)	310, 494, 532, 570, 591
NspI	RCATGY	1 cut(s)	289
PagI	TCATGA	1 cut(s)	94
PciI	ACATGT	1 cut(s)	285
PctI	GAATGC	1 cut(s)	378
PfeI	GAWTC	5 cut(s)	59, 114, 363, 410, 725
PkrI	GCNGC	4 cut(s)	298, 421, 436, 700
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PscI	ACATGT	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	383
PspN4I	GGNNCC	1 cut(s)	10
PsrI	GAACNNNNNNTAC	4 cut(s)	90, 122, 147, 179
PsuI	RGATCY	2 cut(s)	8, 26
PvuII	CAGCTG	1 cut(s)	701
RseI	CAYNNNNRTG	4 cut(s)	290, 371, 501, 539
SacI	GAGCTC	1 cut(s)	491
SaqAI	TTAA	2 cut(s)	269, 426
SatI	GCNGC	4 cut(s)	297, 420, 435, 699
Sau3AI	GATC	3 cut(s)	8, 26, 703
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	385
SduI	GDGCHC	1 cut(s)	491
SetI	ASST	7 cut(s)	230, 308, 312, 439, 491, 580, 703
SfcI	CTRYAG	1 cut(s)	357
SmiMI	CAYNNNNRTG	4 cut(s)	290, 371, 501, 539
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
SsiI	CCGC	1 cut(s)	12
SstI	GAGCTC	1 cut(s)	491
StyD4I	CCNGG	1 cut(s)	383
StyI	CCWWGG	2 cut(s)	291, 612
TaiI	ACGT	1 cut(s)	312
TfiI	GAWTC	5 cut(s)	59, 114, 363, 410, 725
Tru1I	TTAA	2 cut(s)	269, 426
Tru9I	TTAA	2 cut(s)	269, 426
TseFI	GTSAC	5 cut(s)	310, 494, 532, 570, 591
TseI	GCWGC	4 cut(s)	296, 419, 434, 698
Tsp45I	GTSAC	5 cut(s)	310, 494, 532, 570, 591
TspDTI	ATGAA	8 cut(s)	17, 83, 110, 111, 246, 368, 486, 738
XapI	RAATTY	2 cut(s)	456, 744
XceI	RCATGY	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.