pycom03g05060

SAGA-associated factor 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0019749
Physical Location & Seq
Forward (+)
3939006 .. 3940236
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 351 bp
ATGGCATGCTATGATAGGTTGAAGACAATAACAGAAACAAGCGCGTCGCAGTGTATCACCCTCCGTTCTCCTTCCCCAAAAGCCCAATTCCATCGATTTGGCATCACTTCGCTCTCTACCTTCAGTCTCAGAGCAGCTTCCGATCACTTCCCTCTCTCCCTTCGAAACAATCAGTTTATAAACCCATTTAGCTCCTTCATGTCGCTTCCAAATGAAGAAAATGCTATGTCCTCTTCTCCCGATGCTCAGCTTTCGTCTCATGTTTTTGGGGACCTCCTCGATTCAATTATTGTTGATGTTGCATCTGAGTGTCATCGAATAGCAAAGTTGGGTCTTGATCGTTCATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sgf11

Protein Analysis

117

Amino Acids

12.8

Weight (kDa)

6.39

Isoelectric Point (pI)

69.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019749)

Species Orthologous Gene IDs
malus_domestica MD03G1071200.v1.1 MD06G1018000.v1.1 MD08G1049100.v1.1 MD11G1248100.v1.1 MD14G1169900.v1.1
pyrus_communis pycom02g22110 pycom03g05060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 179, 349
AccII CGCG 1 cut(s) 44
AcuI CTGAAG 1 cut(s) 106
AgsI TTSAA 2 cut(s) 22, 285
AluBI AGCT 3 cut(s) 137, 192, 250
AluI AGCT 3 cut(s) 137, 192, 250
Alw26I GTCTC 2 cut(s) 131, 261
ApeKI GCWGC 1 cut(s) 134
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 49
AsuII TTCGAA 1 cut(s) 163
AvaII GGWCC 1 cut(s) 271
BbsI GAAGAC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 99
BcoDI GTCTC 2 cut(s) 131, 261
BisI GCNGC 1 cut(s) 135
BlpI GCTNAGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 272
BmsI GCATC 3 cut(s) 111, 232, 311
BpiI GAAGAC 1 cut(s) 29
Bpu1102I GCTNAGC 1 cut(s) 246
Bpu14I TTCGAA 1 cut(s) 163
Bsa29I ATCGAT 1 cut(s) 94
BseCI ATCGAT 1 cut(s) 94
BseMII CTCAG 3 cut(s) 142, 260, 297
BseRI GAGGAG 1 cut(s) 266
BseXI GCAGC 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 44
BshVI ATCGAT 1 cut(s) 94
BslFI GGGAC 1 cut(s) 284
BsmAI GTCTC 2 cut(s) 131, 261
BsmBI CGTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 284
Bsp119I TTCGAA 1 cut(s) 163
Bsp143I GATC 2 cut(s) 142, 337
Bsp1720I GCTNAGC 1 cut(s) 246
BspCNI CTCAG 3 cut(s) 141, 259, 298
BspDI ATCGAT 1 cut(s) 94
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 1 cut(s) 272
BspT104I TTCGAA 1 cut(s) 163
BssMI GATC 2 cut(s) 142, 337
Bst6I CTCTTC 1 cut(s) 238
BstBI TTCGAA 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 128, 246, 306
BstFNI CGCG 1 cut(s) 44
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 2 cut(s) 145, 340
BstMAI GTCTC 2 cut(s) 131, 261
BstMBI GATC 2 cut(s) 142, 337
BstNSI RCATGY 1 cut(s) 9
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 146
BstV2I GAAGAC 1 cut(s) 29
BstXI CCANNNNNNTGG 1 cut(s) 98
Bsu15I ATCGAT 1 cut(s) 94
BsuTUI ATCGAT 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 271
ClaI ATCGAT 1 cut(s) 94
CseI GACGC 1 cut(s) 33
CviAII CATG 3 cut(s) 6, 199, 260
CviJI RGCY 4 cut(s) 83, 137, 192, 250
CviKI_1 RGCY 4 cut(s) 83, 137, 192, 250
DdeI CTNAG 3 cut(s) 128, 246, 306
DpnI GATC 2 cut(s) 144, 339
DpnII GATC 2 cut(s) 142, 337
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 106
EcoO109I RGGNCCY 1 cut(s) 271
Esp3I CGTCTC 1 cut(s) 261
FaeI CATG 3 cut(s) 9, 202, 263
FaiI YATR 7 cut(s) 7, 12, 179, 200, 227, 261, 349
FaqI GGGAC 1 cut(s) 284
FatI CATG 3 cut(s) 5, 198, 259
Fnu4HI GCNGC 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 135
GlaI GCGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 135
HgaI GACGC 1 cut(s) 33
HhaI GCGC 1 cut(s) 44
Hin1II CATG 3 cut(s) 9, 202, 263
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HinfI GANTC 1 cut(s) 281
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 3 cut(s) 131, 142, 307
Hpy188III TCNNGA 2 cut(s) 239, 335
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 4 cut(s) 81, 130, 170, 205
HpyCH4V TGCA 1 cut(s) 302
HpyF3I CTNAG 3 cut(s) 128, 246, 306
Hsp92II CATG 3 cut(s) 9, 202, 263
HspAI GCGC 1 cut(s) 42
Kzo9I GATC 2 cut(s) 142, 337
LmnI GCTCC 1 cut(s) 197
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 3 cut(s) 111, 232, 311
MalI GATC 2 cut(s) 144, 339
MboI GATC 2 cut(s) 142, 337
MboII GAAGA 3 cut(s) 34, 225, 227
MluCI AATT 2 cut(s) 86, 285
MnlI CCTC 5 cut(s) 71, 162, 241, 284, 287
MslI CAYNNNNRTG 1 cut(s) 307
MvnI CGCG 1 cut(s) 44
NdeII GATC 2 cut(s) 142, 337
NlaIII CATG 3 cut(s) 9, 202, 263
NlaIV GGNNCC 1 cut(s) 272
NspI RCATGY 1 cut(s) 9
NspV TTCGAA 1 cut(s) 163
PaeI GCATGC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 281
PkrI GCNGC 1 cut(s) 136
PpuMI RGGWCCY 1 cut(s) 271
PsiI TTATAA 2 cut(s) 179, 349
Psp5II RGGWCCY 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 1 cut(s) 271
PspPPI RGGWCCY 1 cut(s) 271
RseI CAYNNNNRTG 1 cut(s) 307
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 2 cut(s) 142, 337
Sau96I GGNCC 1 cut(s) 271
SetI ASST 6 cut(s) 20, 122, 139, 194, 252, 276
SfaNI GCATC 3 cut(s) 111, 232, 311
SfuI TTCGAA 1 cut(s) 163
SgeI CNNG 8 cut(s) 18, 51, 55, 211, 251, 272, 290, 347
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 307
SphI GCATGC 1 cut(s) 9
Sse9I AATT 2 cut(s) 86, 285
TaqI TCGA 4 cut(s) 94, 163, 279, 316
TasI AATT 2 cut(s) 86, 285
TfiI GAWTC 1 cut(s) 281
TscAI CASTG 1 cut(s) 56
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 3 cut(s) 187, 228, 333
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 271
XceI RCATGY 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.