Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004615

Physical Location & Seq

Genomic Coordinates Forward (+)

4866702 .. 4868376

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g06150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCCTCTGCAACTGCAATCCGAACTTCTTATCTCACTCTCTCCCGAGACCGAAACGTTCCAAAACCTGAATCGCCGAAATTCCAGCTCCCTCCGCGTTTCGTCGACTCGCAGAACCGAAACACCCGATTCCGAGACTTTTCGTCGGCGAGCTCACTGCAGAGAATTCGACTGCAGCATGGCTCAGCCGAGCTCCGCCTCGTTCTCCCGCACCGATTTAGGGTTTCTTCCAACGACGCTCAGTTCGGCTCGTTTTCGGAGGAGAACGAAGTTCAGGCGCCGAGTTTCGCCGAGTTTATCACCTCGGAGCGGGTCAAAGTTGTGGCGATGCTTGCTTTGGCTCTGGCTCTCTGTAATGCCGACCGTGTTGTGATGTCGGTGGCGATTGTGCCGTTATCGCTTTCTAATGGCTGGAGCCGATCGTTTGCTGGTATTGTTCAGTCATCTTTCCTTTGGGGTTACCTCGTTTCTCCCATAGCTGGAGGGACTCTTGTGGACTATTATGGTGGTAAGGTAGTCATGGCCTGGGGAGTGGCTTTGTGGTCTTTAGCAACCTTTCTTACTCCGTGGGCTGCGGAAAATTCTCTATGGGCCCTCCTTGCGATGCGTGCTCTCCTTGGAATTGCAGAAGGAGTGGCTCTTCCATGCATGAACAACATGGTAGCGAGGTGGTTTCCTCAAACAGAACGAGCCAGGGCTGTTGGACTTGCAATGGCCGGATTTCAGCTTGGAAGTGCAGTAGGACTCATGCTTTCTCCAATCCTCATGTCACAAGGTGGTATATTTGTACCATTCGCGATATTTGGTTTATCTGGATTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009536 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 Pkinase

Protein Analysis

275

Amino Acids

29.81

Weight (kDa)

10.0

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46980 AT3G46980 AT3G46980 AT3G46980 AT3G46980 AT3G46980 AT3G46980
fragaria_vesca	FvH4_3g37920 FvH4_3g37920 FvH4_3g37920 FvH4_3g37920 FvH4_3g37920
malus_domestica	MD11G1082000.v1.1
prunus_persica	Prupe.6G062400_v2.0.a1 Prupe.6G062400_v2.0.a1 Prupe.6G062400_v2.0.a1 Prupe.6G062400_v2.0.a1 Prupe.6G062400_v2.0.a1
pyrus_communis	pycom03g06150 pycom11g07030
rosa_chinensis	RchiOBHm_Chr5g0068341
rosa_laevigata	RLG00000035967
rosa_multiflora	Rmu_sc0001418.1_g000019 Rmu_sc0012198.1_g000004
rosa_roxburghii	Rroxscaffold_1G00012430
rosa_rugosa	Rorug05G0388900
rosa_samantha	Rh5AG447700 Rh5BG465600 Rh5CG487400 Rh5DG479300
rosa_wichuraiana	Rw5G041790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	277
AccBSI	CCGCTC	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	105
AccII	CGCG	2 cut(s)	97, 797
AciI	CCGC	5 cut(s)	95, 196, 209, 310, 575
AclI	AACGTT	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	714
AcsI	RAATTY	3 cut(s)	80, 165, 580
AcyI	GRCGYC	1 cut(s)	278
AdeI	CACNNNGTG	1 cut(s)	776
AfaI	GTAC	1 cut(s)	789
AfiI	CCNNNNNNNGG	3 cut(s)	220, 309, 479
AhdI	GACNNNNNGTC	1 cut(s)	142
AjnI	CCWGG	2 cut(s)	524, 692
AluBI	AGCT	5 cut(s)	88, 153, 193, 479, 727
AluI	AGCT	5 cut(s)	88, 153, 193, 479, 727
Alw21I	GWGCWC	3 cut(s)	155, 195, 613
Alw26I	GTCTC	2 cut(s)	42, 129
Ama87I	CYCGRG	1 cut(s)	45
AoxI	GGCC	4 cut(s)	3, 522, 591, 714
ApaI	GGGCCC	1 cut(s)	595
ApeKI	GCWGC	2 cut(s)	175, 572
ApoI	RAATTY	3 cut(s)	80, 165, 580
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	2 cut(s)	591, 592
AsuHPI	GGTGA	1 cut(s)	292
AvaI	CYCGRG	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	595
BanI	GGYRCC	1 cut(s)	277
BanII	GRGCYC	3 cut(s)	155, 195, 595
Bbv12I	GWGCWC	3 cut(s)	155, 195, 613
BbvI	GCAGC	2 cut(s)	187, 559
BceAI	ACGGC	1 cut(s)	376
BcgI	CGANNNNNNTGC	4 cut(s)	139, 149, 173, 183
BciT130I	CCWGG	2 cut(s)	526, 694
BcoDI	GTCTC	2 cut(s)	42, 129
BfmI	CTRYAG	2 cut(s)	158, 173
BfoI	RGCGCY	1 cut(s)	281
BisI	GCNGC	2 cut(s)	176, 573
BlpI	GCTNAGC	1 cut(s)	184
BlsI	GCNGC	2 cut(s)	177, 574
Bme1390I	CCNGG	2 cut(s)	526, 694
BmeRI	GACNNNNNGTC	1 cut(s)	142
BmeT110I	CYCGRG	1 cut(s)	45
BmgT120I	GGNCC	2 cut(s)	591, 592
BmiI	GGNNCC	3 cut(s)	279, 416, 593
BmrFI	CCNGG	2 cut(s)	526, 694
BmsI	GCATC	2 cut(s)	318, 594
BpmI	CTGGAG	2 cut(s)	433, 501
Bpu1102I	GCTNAGC	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	278
BsaI	GGTCTC	1 cut(s)	42
BsaJI	CCNNGG	5 cut(s)	303, 525, 566, 616, 693
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 309, 479
Bse3DI	GCAATG	1 cut(s)	717
BseBI	CCWGG	2 cut(s)	526, 694
BseDI	CCNNGG	5 cut(s)	303, 525, 566, 616, 693
BseLI	CCNNNNNNNGG	3 cut(s)	220, 309, 479
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	2 cut(s)	198, 254
BseRI	GAGGAG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	595
BseXI	GCAGC	2 cut(s)	187, 559
BsgI	GTGCAG	1 cut(s)	756
Bsh1236I	CGCG	2 cut(s)	97, 797
Bsh1285I	CGRYCG	2 cut(s)	364, 422
BshFI	GGCC	4 cut(s)	5, 524, 593, 716
BshNI	GGYRCC	1 cut(s)	277
BsiEI	CGRYCG	2 cut(s)	364, 422
BsiHKAI	GWGCWC	3 cut(s)	155, 195, 613
BsiHKCI	CYCGRG	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	717
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	3 cut(s)	220, 309, 479
BsmAI	GTCTC	2 cut(s)	42, 129
BsmFI	GGGAC	1 cut(s)	499
BsnI	GGCC	4 cut(s)	5, 524, 593, 716
Bso31I	GGTCTC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	45
Bsp120I	GGGCCC	1 cut(s)	591
Bsp1286I	GDGCHC	4 cut(s)	155, 195, 595, 613
Bsp143I	GATC	1 cut(s)	419
Bsp1720I	GCTNAGC	1 cut(s)	184
Bsp68I	TCGCGA	1 cut(s)	797
BspACI	CCGC	5 cut(s)	95, 196, 209, 310, 575
BspANI	GGCC	4 cut(s)	5, 524, 593, 716
BspCNI	CTCAG	2 cut(s)	197, 253
BspFNI	CGCG	2 cut(s)	97, 797
BspLI	GGNNCC	3 cut(s)	279, 416, 593
BspMAI	CTGCAG	2 cut(s)	162, 177
BspQI	GCTCTTC	1 cut(s)	645
BspT107I	GGYRCC	1 cut(s)	277
BspTNI	GGTCTC	1 cut(s)	42
BsrBI	CCGCTC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	717
BssECI	CCNNGG	5 cut(s)	303, 525, 566, 616, 693
BssMI	GATC	1 cut(s)	419
BssNI	GRCGYC	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	616
Bst2UI	CCWGG	2 cut(s)	526, 694
Bst4CI	ACNGT	1 cut(s)	365
Bst6I	CTCTTC	1 cut(s)	645
BstACI	GRCGYC	1 cut(s)	278
BstC8I	GCNNGC	3 cut(s)	151, 333, 609
BstDEI	CTNAG	2 cut(s)	184, 240
BstDSI	CCRYGG	1 cut(s)	566
BstEII	GGTNACC	1 cut(s)	458
BstFNI	CGCG	2 cut(s)	97, 797
BstH2I	RGCGCY	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	1 cut(s)	422
BstMAI	GTCTC	2 cut(s)	42, 129
BstMBI	GATC	1 cut(s)	419
BstMCI	CGRYCG	2 cut(s)	364, 422
BstMWI	GCNNNNNNNGC	5 cut(s)	94, 332, 397, 599, 608
BstNI	CCWGG	2 cut(s)	526, 694
BstPI	GGTNACC	1 cut(s)	458
BstSCI	CCNGG	2 cut(s)	524, 692
BstSFI	CTRYAG	2 cut(s)	158, 173
BstSLI	GKGCMC	1 cut(s)	595
BstUI	CGCG	2 cut(s)	97, 797
BstV1I	GCAGC	2 cut(s)	187, 559
BsuRI	GGCC	4 cut(s)	5, 524, 593, 716
BtgI	CCRYGG	1 cut(s)	566
BtgZI	GCGATG	2 cut(s)	341, 617
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	155
BtuMI	TCGCGA	1 cut(s)	797
Cac8I	GCNNGC	3 cut(s)	151, 333, 609
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	2 cut(s)	591, 592
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	788
CviAII	CATG	7 cut(s)	179, 520, 645, 649, 658, 748, 766
CviQI	GTAC	1 cut(s)	788
DdeI	CTNAG	2 cut(s)	184, 240
DinI	GGCGCC	1 cut(s)	279
DpnI	GATC	1 cut(s)	421
DpnII	GATC	1 cut(s)	419
DraIII	CACNNNGTG	1 cut(s)	776
DriI	GACNNNNNGTC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	714
Eam1104I	CTCTTC	1 cut(s)	645
Eam1105I	GACNNNNNGTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	645
EciI	GGCGGA	1 cut(s)	185
Ecl136II	GAGCTC	2 cut(s)	153, 193
Eco130I	CCWWGG	1 cut(s)	616
Eco24I	GRGCYC	3 cut(s)	155, 195, 595
Eco31I	GGTCTC	1 cut(s)	42
Eco53kI	GAGCTC	2 cut(s)	153, 193
Eco88I	CYCGRG	1 cut(s)	45
Eco91I	GGTNACC	1 cut(s)	458
EcoICRI	GAGCTC	2 cut(s)	153, 193
EcoO109I	RGGNCCY	1 cut(s)	592
EcoO65I	GGTNACC	1 cut(s)	458
EcoRI	GAATTC	1 cut(s)	165
EcoRII	CCWGG	2 cut(s)	524, 692
EcoT14I	CCWWGG	1 cut(s)	616
EcoT22I	ATGCAT	1 cut(s)	650
EcoT38I	GRGCYC	3 cut(s)	155, 195, 595
EgeI	GGCGCC	1 cut(s)	279
EheI	GGCGCC	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	616
FaeI	CATG	7 cut(s)	182, 523, 648, 652, 661, 751, 769
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	7 cut(s)	178, 519, 644, 648, 657, 747, 765
FauI	CCCGC	2 cut(s)	216, 303
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	2 cut(s)	176, 573
FriOI	GRGCYC	3 cut(s)	155, 195, 595
Fsp4HI	GCNGC	2 cut(s)	176, 573
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	2 cut(s)	176, 573
GsuI	CTGGAG	2 cut(s)	433, 501
HaeII	RGCGCY	1 cut(s)	281
HaeIII	GGCC	4 cut(s)	5, 524, 593, 716
HapII	CCGG	1 cut(s)	717
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	280
Hin1I	GRCGYC	1 cut(s)	278
Hin1II	CATG	7 cut(s)	182, 523, 648, 652, 661, 751, 769
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	5 cut(s)	71, 107, 129, 487, 744
HpaII	CCGG	1 cut(s)	717
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	2 cut(s)	106, 496
Hpy188I	TCNGA	4 cut(s)	23, 134, 259, 307
Hpy188III	TCNNGA	3 cut(s)	45, 796, 813
Hpy8I	GTNNAC	2 cut(s)	106, 496
Hpy99I	CGWCG	3 cut(s)	107, 148, 239
HpyAV	CCTTC	1 cut(s)	623
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	8 cut(s)	11, 17, 160, 175, 626, 648, 710, 737
HpyF10VI	GCNNNNNNNGC	5 cut(s)	94, 332, 397, 599, 608
HpyF3I	CTNAG	2 cut(s)	184, 240
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	278
Hsp92II	CATG	7 cut(s)	182, 523, 648, 652, 661, 751, 769
HspAI	GCGC	1 cut(s)	278
KasI	GGCGCC	1 cut(s)	277
Kzo9I	GATC	1 cut(s)	419
LguI	GCTCTTC	1 cut(s)	645
LmnI	GCTCC	4 cut(s)	93, 198, 307, 414
Lsp1109I	GCAGC	2 cut(s)	187, 559
LweI	GCATC	2 cut(s)	318, 594
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	2 cut(s)	458, 768
MalI	GATC	1 cut(s)	421
MbiI	CCGCTC	1 cut(s)	310
MboI	GATC	1 cut(s)	419
MboII	GAAGA	2 cut(s)	219, 632
MhlI	GDGCHC	4 cut(s)	155, 195, 595, 613
MluCI	AATT	4 cut(s)	80, 165, 580, 621
Mly113I	GGCGCC	1 cut(s)	278
MlyI	GAGTC	3 cut(s)	101, 481, 738
MmeI	TCCRAC	2 cut(s)	255, 682
Mph1103I	ATGCAT	1 cut(s)	650
MspI	CCGG	1 cut(s)	717
MspR9I	CCNGG	2 cut(s)	526, 694
MvaI	CCWGG	2 cut(s)	526, 694
MvnI	CGCG	2 cut(s)	97, 797
MwoI	GCNNNNNNNGC	5 cut(s)	94, 332, 397, 599, 608
NarI	GGCGCC	1 cut(s)	278
NdeII	GATC	1 cut(s)	419
NlaIII	CATG	7 cut(s)	182, 523, 648, 652, 661, 751, 769
NlaIV	GGNNCC	3 cut(s)	279, 416, 593
NmeAIII	GCCGAG	3 cut(s)	214, 306, 316
NmuCI	GTSAC	1 cut(s)	768
NruI	TCGCGA	1 cut(s)	797
NsiI	ATGCAT	1 cut(s)	650
PciSI	GCTCTTC	1 cut(s)	645
PfeI	GAWTC	2 cut(s)	71, 129
PkrI	GCNGC	2 cut(s)	177, 574
Ple19I	CGATCG	1 cut(s)	422
PleI	GAGTC	3 cut(s)	101, 481, 738
PluTI	GGCGCC	1 cut(s)	281
PpsI	GAGTC	3 cut(s)	101, 481, 738
Psp124BI	GAGCTC	2 cut(s)	155, 195
Psp1406I	AACGTT	1 cut(s)	57
Psp6I	CCWGG	2 cut(s)	524, 692
PspEI	GGTNACC	1 cut(s)	458
PspGI	CCWGG	2 cut(s)	524, 692
PspN4I	GGNNCC	3 cut(s)	279, 416, 593
PspOMI	GGGCCC	1 cut(s)	591
PspPI	GGNCC	2 cut(s)	591, 592
PstI	CTGCAG	2 cut(s)	162, 177
PvuI	CGATCG	1 cut(s)	422
RruI	TCGCGA	1 cut(s)	797
RsaI	GTAC	1 cut(s)	789
RsaNI	GTAC	1 cut(s)	788
SacI	GAGCTC	2 cut(s)	155, 195
SalI	GTCGAC	1 cut(s)	104
SapI	GCTCTTC	1 cut(s)	645
SatI	GCNGC	2 cut(s)	176, 573
Sau3AI	GATC	1 cut(s)	419
Sau96I	GGNCC	2 cut(s)	591, 592
SchI	GAGTC	3 cut(s)	101, 481, 738
ScrFI	CCNGG	2 cut(s)	526, 694
SduI	GDGCHC	4 cut(s)	155, 195, 595, 613
SfaNI	GCATC	2 cut(s)	318, 594
SfcI	CTRYAG	2 cut(s)	158, 173
SfoI	GGCGCC	1 cut(s)	279
Sse9I	AATT	4 cut(s)	80, 165, 580, 621
SsiI	CCGC	5 cut(s)	95, 196, 209, 310, 575
SspDI	GGCGCC	1 cut(s)	277
SstI	GAGCTC	2 cut(s)	155, 195
StyD4I	CCNGG	2 cut(s)	524, 692
StyI	CCWWGG	1 cut(s)	616
TaaI	ACNGT	1 cut(s)	365
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	105, 169
TaqII	GACCGA	1 cut(s)	66
TasI	AATT	4 cut(s)	80, 165, 580, 621
TfiI	GAWTC	2 cut(s)	71, 129
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	768
TseI	GCWGC	2 cut(s)	175, 572
Tsp45I	GTSAC	1 cut(s)	768
TspDTI	ATGAA	1 cut(s)	665
TspGWI	ACGGA	1 cut(s)	555
TspRI	CASTG	1 cut(s)	162
XapI	RAATTY	3 cut(s)	80, 165, 580
XmiI	GTMKAC	1 cut(s)	105
Zsp2I	ATGCAT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.