Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004615

Physical Location & Seq

Genomic Coordinates Reverse (-)

52864339 .. 52870184

Gene Structure 5846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0388900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCAACTCTCCATTTACACAACCTCCTGCCCAATCCGACGTCGTTCAAATCACCATTTTCAACTCGGCCCAGACCGCGGTCCAACTCGGTCAGGTGCGTCGGCGAGGCAACTCAGGTGAGCAGCAGCAGCGAGACCAACCGAGTCACAGTGAGTAACGGCAACGATTCGTTGGACATATGCCGAGTCCTGAACGGAATGTGGCAGACCAGCGGCGCCTGGGGCCGCATCGACCGAGACGACGCCGTTGAGGCCATGCTCCGCTACGCCGACGCCGGCCTCTCCACCTTCGACATGGCCGACCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046677 GO:0050896 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

102

Amino Acids

11.2

Weight (kDa)

6.25

Isoelectric Point (pI)

28.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46980 AT3G46980 AT3G46980 AT3G46980 AT3G46980 AT3G46980 AT3G46980
fragaria_vesca	FvH4_3g37920 FvH4_3g37920 FvH4_3g37920 FvH4_3g37920 FvH4_3g37920
malus_domestica	MD11G1082000.v1.1
prunus_persica	Prupe.6G062400_v2.0.a1 Prupe.6G062400_v2.0.a1 Prupe.6G062400_v2.0.a1 Prupe.6G062400_v2.0.a1 Prupe.6G062400_v2.0.a1
pyrus_communis	pycom03g06150 pycom11g07030
rosa_chinensis	RchiOBHm_Chr5g0068341
rosa_laevigata	RLG00000035967
rosa_multiflora	Rmu_sc0001418.1_g000019 Rmu_sc0012198.1_g000004
rosa_roxburghii	Rroxscaffold_1G00012430
rosa_rugosa	Rorug05G0388900
rosa_samantha	Rh5AG447700 Rh5BG465600 Rh5CG487400 Rh5DG479300
rosa_wichuraiana	Rw5G041790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	44
AccB1I	GGYRCC	1 cut(s)	215
AccII	CGCG	1 cut(s)	79
AciI	CCGC	5 cut(s)	77, 79, 213, 226, 262
AcoI	YGGCCR	1 cut(s)	297
AcyI	GRCGYC	4 cut(s)	41, 216, 243, 273
AfiI	CCNNNNNNNGG	1 cut(s)	78
AgsI	TTSAA	2 cut(s)	49, 63
AjnI	CCWGG	1 cut(s)	218
Alw26I	GTCTC	2 cut(s)	128, 231
AoxI	GGCC	5 cut(s)	68, 223, 252, 277, 297
ApeKI	GCWGC	3 cut(s)	123, 126, 129
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	3 cut(s)	69, 81, 223
AsuHPI	GGTGA	2 cut(s)	45, 130
AvaII	GGWCC	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	215
BbvI	GCAGC	3 cut(s)	135, 138, 141
BceAI	ACGGC	2 cut(s)	175, 230
BciT130I	CCWGG	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	128, 231
BfoI	RGCGCY	1 cut(s)	219
BglI	GCCNNNNNGGC	1 cut(s)	251
BisI	GCNGC	5 cut(s)	124, 127, 130, 214, 226
BlsI	GCNGC	5 cut(s)	125, 128, 131, 215, 227
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	3 cut(s)	69, 81, 223
BmiI	GGNNCC	2 cut(s)	217, 224
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	1 cut(s)	237
BoxI	GACNNNNGTC	1 cut(s)	79
BsaHI	GRCGYC	4 cut(s)	41, 216, 243, 273
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	77, 219
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse118I	RCCGGY	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	2 cut(s)	77, 219
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	128
BseXI	GCAGC	3 cut(s)	135, 138, 141
Bsh1236I	CGCG	1 cut(s)	79
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	5 cut(s)	70, 225, 254, 279, 299
BshNI	GGYRCC	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmAI	GTCTC	2 cut(s)	128, 231
BsmBI	CGTCTC	1 cut(s)	231
BsnI	GGCC	5 cut(s)	70, 225, 254, 279, 299
Bso31I	GGTCTC	1 cut(s)	128
BspACI	CCGC	5 cut(s)	77, 79, 213, 226, 262
BspANI	GGCC	5 cut(s)	70, 225, 254, 279, 299
BspCNI	CTCAG	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	217, 224
BspT107I	GGYRCC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	77, 219
BssNI	GRCGYC	4 cut(s)	41, 216, 243, 273
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	151
BstACI	GRCGYC	4 cut(s)	41, 216, 243, 273
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	77
BstFNI	CGCG	1 cut(s)	79
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstMAI	GTCTC	2 cut(s)	128, 231
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 129, 222, 251
BstNI	CCWGG	1 cut(s)	220
BstPAI	GACNNNNGTC	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	218
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	3 cut(s)	135, 138, 141
BsuRI	GGCC	5 cut(s)	70, 225, 254, 279, 299
BtgI	CCRYGG	1 cut(s)	77
BtsIMutI	CAGTG	2 cut(s)	156, 304
Cac8I	GCNNGC	1 cut(s)	277
CfoI	GCGC	1 cut(s)	218
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	3 cut(s)	69, 81, 223
Cfr42I	CCGCGG	1 cut(s)	80
CseI	GACGC	3 cut(s)	88, 251, 281
CviAII	CATG	2 cut(s)	256, 295
CviJI	RGCY	5 cut(s)	70, 225, 254, 279, 299
CviKI_1	RGCY	5 cut(s)	70, 225, 254, 279, 299
DdeI	CTNAG	1 cut(s)	114
DinI	GGCGCC	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	218
EgeI	GGCGCC	1 cut(s)	217
EheI	GGCGCC	1 cut(s)	217
Esp3I	CGTCTC	1 cut(s)	231
FaeI	CATG	2 cut(s)	259, 298
FaiI	YATR	4 cut(s)	179, 181, 257, 296
FatI	CATG	2 cut(s)	255, 294
FauNDI	CATATG	1 cut(s)	179
Fnu4HI	GCNGC	5 cut(s)	124, 127, 130, 214, 226
Fsp4HI	GCNGC	5 cut(s)	124, 127, 130, 214, 226
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	5 cut(s)	124, 127, 130, 214, 226
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	5 cut(s)	70, 225, 254, 279, 299
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	3 cut(s)	88, 251, 281
HhaI	GCGC	1 cut(s)	218
Hin1I	GRCGYC	4 cut(s)	41, 216, 243, 273
Hin1II	CATG	2 cut(s)	259, 298
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HinfI	GANTC	3 cut(s)	144, 167, 186
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	2 cut(s)	45, 130
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	1 cut(s)	190
Hpy99I	CGWCG	5 cut(s)	43, 46, 104, 245, 275
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 129, 222, 251
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	4 cut(s)	41, 216, 243, 273
Hsp92II	CATG	2 cut(s)	259, 298
HspAI	GCGC	1 cut(s)	216
KasI	GGCGCC	1 cut(s)	215
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
KspI	CCGCGG	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	9 cut(s)	41, 79, 85, 101, 203, 205, 223, 232, 289
Lsp1109I	GCAGC	3 cut(s)	135, 138, 141
LweI	GCATC	1 cut(s)	237
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	145, 155
Mly113I	GGCGCC	1 cut(s)	216
MlyI	GAGTC	2 cut(s)	153, 195
MmeI	TCCRAC	3 cut(s)	62, 108, 153
MnlI	CCTC	4 cut(s)	35, 100, 244, 290
MroNI	GCCGGC	1 cut(s)	275
MspA1I	CMGCKG	2 cut(s)	79, 213
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	4 cut(s)	76, 129, 222, 251
NaeI	GCCGGC	1 cut(s)	277
NarI	GGCGCC	1 cut(s)	216
NdeI	CATATG	1 cut(s)	179
NgoMIV	GCCGGC	1 cut(s)	275
NlaIII	CATG	2 cut(s)	259, 298
NlaIV	GGNNCC	2 cut(s)	217, 224
NmeAIII	GCCGAG	2 cut(s)	46, 209
NmuCI	GTSAC	1 cut(s)	145
PcsI	WCGNNNNNNNCGW	2 cut(s)	237, 297
PdiI	GCCGGC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	5 cut(s)	125, 128, 131, 215, 227
PleI	GAGTC	2 cut(s)	152, 194
PluTI	GGCGCC	1 cut(s)	219
PpsI	GAGTC	2 cut(s)	152, 194
PshAI	GACNNNNGTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	2 cut(s)	217, 224
PspPI	GGNCC	3 cut(s)	69, 81, 223
SacII	CCGCGG	1 cut(s)	80
SatI	GCNGC	5 cut(s)	124, 127, 130, 214, 226
Sau96I	GGNCC	3 cut(s)	69, 81, 223
SchI	GAGTC	2 cut(s)	153, 195
ScrFI	CCNGG	1 cut(s)	220
SetI	ASST	5 cut(s)	27, 44, 98, 120, 290
SfaNI	GCATC	1 cut(s)	237
SfoI	GGCGCC	1 cut(s)	217
Sfr303I	CCGCGG	1 cut(s)	80
SgrBI	CCGCGG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	81
SsiI	CCGC	5 cut(s)	77, 79, 213, 226, 262
SspDI	GGCGCC	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	231, 291
TaqII	GACCGA	2 cut(s)	79, 249
TauI	GCSGC	2 cut(s)	216, 228
TfiI	GAWTC	1 cut(s)	167
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	3 cut(s)	123, 126, 129
Tsp45I	GTSAC	1 cut(s)	145
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	81
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
ZraI	GACGTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.