Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010495

Physical Location & Seq

Genomic Coordinates Forward (+)

5542091 .. 5545662

Gene Structure 3572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g06960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGCAACTTTTTGCTTCATCAACTTTTTTGCATTCTGATTTTGTTCTTCTTCTGATTCCAGTCCTGCTGCTCTTAGGCCTTGTCCTCCAATGGCGCCACCCCAAGCACAAACGCCTCCCCCCTGGCTCAATGGGTTGGCCTTACATAGGAGAGACCCTCAAGCTTTATACTGAAAACCCAAATTCTTTCTTCTCTACCAGGCAAAAACGGTATGGAAATATTTTTAAGACGCATATATTGGGGTGTCCTTGTGTGATGATTACAAGCCCAGAAGCAGCAAGAATGGTTCTTGTGAGCAGGGCACATCTGTTCAAGCCGACCTATCCAAGAAGCAAAGAGAGAATGATAGGACCGGAAGCAATATTTTTCCACCAAGGGGCCTACCATTCAAGGTTGAAGAAGATGGTTCAGGCTTCCCTTTTGCCTAGTGCAATAAAAGAGTCGGTCTCAGAGATTGAACAAATTGTTATCAATCTTCTCCCCACTTGGAAGAACAACACCATCAACACTTTGCAAGAGATGAAGAGGTATGCTTTTGATGTGGCAATGATTTCAGCCTTCGGAAACAAAAGGGAGTTTGAAATGGAAGGAATTAAACATCTGTATCAATGCCTTGAGAAAGGCTACAATTCCATGCCTCTTGATCTACCTGGAACTCCCTTTCACAAAGCCATGAAGGCAAGGAAGCTTCTCAATGAGACATTGAAAAAAATGATAGAAGAGAGAAGGAAGAGTCATAAAGAAGATAGTGGTGGCTTGTTGAGAGTAATGCTGGGAGCAACAGACCAGAATAATAAGCTTAATTTGCAGCTTAGTGATTCTCAAATTGCTGACAATATCATTGGGGTAATCTTTGCTGCTCACGATACCACTGCAAGTGTCCTAACTTGGCTCATTAAATATCTCCACGACAATGCCGATCTCCTAGAAGCTGTTACTAGAGAACAAGAAGGAATTCGATGCCAATTGGTCAATGAGAATCGTGGGCTTACGTGGGATGATACTAGGCGCATGCCCTTAACTACCAGGGTGATTCAAGAAACTCTAAGAACAGCAAGTATACTGTCCTTCACATTCAGAGAAGCAGTGGAAAACGTGGAGTTCGAGGGTTATTTTATCCCTAAAGGTTGGAAGGTGCTGCCTCTATTCAGAAGCATTCATCACTGTGATGATTTCTTCCCTCAGCCCGAAAAGTTTGACCCTTCAAGATTTGAGGTTCCACCAAGACCAAACACTTTCATGCCGTTTGGAAATGGCGTGCATTCTTGTCCAGGCAGTGAGCTGGCCAAGCTTGAGATGCTCATCCTCCTCCATCACCTCACCACTGCTTACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0006066 GO:0006082 GO:0006629 GO:0006694 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009687 GO:0009791 GO:0009987 GO:0010114 GO:0010154 GO:0010162 GO:0010268 GO:0010295 GO:0010431 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0019752 GO:0021700 GO:0022414 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0042445 GO:0042446 GO:0042592 GO:0043288 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048838 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071704 GO:0097438 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902644

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

446

Amino Acids

51.12

Weight (kDa)

9.2

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29090 AT2G29090 AT2G29090 AT2G29090
fragaria_vesca	FvH4_3g36810 FvH4_3g36810 FvH4_3g36810
malus_domestica	MD03G1088100.v1.1
prunus_persica	Prupe.6G072400_v2.0.a1
pyrus_communis	pycom03g06960
rosa_chinensis	RchiOBHm_Chr5g0065871
rosa_laevigata	RLG00000035823
rosa_multiflora	Rmu_sc0006634.1_g000009
rosa_roxburghii	Rroxscaffold_1G00015290
rosa_rugosa	Rorug05G0374400 Rorug05G0374500
rosa_samantha	Rh5AG433200 Rh5BG449400 Rh5CG471700 Rh5DG463000
rosa_wichuraiana	Rw5G040620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	1060
AcoI	YGGCCR	1 cut(s)	1284
AcsI	RAATTY	2 cut(s)	181, 954
AcyI	GRCGYC	1 cut(s)	94
AfiI	CCNNNNNNNGG	2 cut(s)	146, 376
AgsI	TTSAA	8 cut(s)	313, 390, 397, 458, 581, 706, 1037, 1206
AjnI	CCWGG	5 cut(s)	121, 197, 649, 1025, 1270
AluBI	AGCT	7 cut(s)	163, 688, 799, 811, 932, 1282, 1291
AluI	AGCT	7 cut(s)	163, 688, 799, 811, 932, 1282, 1291
Alw26I	GTCTC	3 cut(s)	146, 451, 692
AoxI	GGCC	4 cut(s)	76, 137, 378, 1284
ApeKI	GCWGC	5 cut(s)	67, 275, 808, 857, 1138
ApoI	RAATTY	2 cut(s)	181, 954
Asp700I	GAANNNNTTC	1 cut(s)	954
AspLEI	GCGC	2 cut(s)	96, 1011
AspS9I	GGNCC	2 cut(s)	350, 378
AsuHPI	GGTGA	3 cut(s)	1042, 1307, 1312
AvaII	GGWCC	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	304
BaeI	ACNNNNGTAYC	2 cut(s)	587, 620
BalI	TGGCCA	1 cut(s)	1286
BanI	GGYRCC	1 cut(s)	93
BbvCI	CCTCAGC	1 cut(s)	1182
BbvI	GCAGC	5 cut(s)	54, 287, 820, 844, 1125
BccI	CCATC	3 cut(s)	397, 509, 1320
BceAI	ACGGC	1 cut(s)	1228
BcgI	CGANNNNNNTGC	2 cut(s)	854, 888
BciT130I	CCWGG	5 cut(s)	123, 199, 651, 1027, 1272
BcoDI	GTCTC	3 cut(s)	146, 451, 692
BfaI	CTAG	4 cut(s)	426, 926, 939, 1005
BfoI	RGCGCY	1 cut(s)	97
BglI	GCCNNNNNGGC	1 cut(s)	677
BisI	GCNGC	5 cut(s)	68, 276, 809, 858, 1139
BlsI	GCNGC	5 cut(s)	69, 277, 810, 859, 1140
Bme1390I	CCNGG	5 cut(s)	123, 199, 651, 1027, 1272
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	350, 378
BmiI	GGNNCC	3 cut(s)	95, 379, 1218
BmrFI	CCNGG	5 cut(s)	123, 199, 651, 1027, 1272
BmsI	GCATC	2 cut(s)	950, 1287
BplI	GAGNNNNNCTC	4 cut(s)	141, 173, 431, 463
Bpu10I	CCTNAGC	1 cut(s)	1182
BpuEI	CTTGAG	3 cut(s)	143, 635, 1313
BsaAI	YACGTR	1 cut(s)	993
BsaBI	GATNNNNATC	1 cut(s)	1301
BsaHI	GRCGYC	1 cut(s)	94
BsaI	GGTCTC	2 cut(s)	146, 451
BsaJI	CCNNGG	3 cut(s)	121, 373, 1026
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 376
Bse1I	ACTGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	552
Bse8I	GATNNNNATC	1 cut(s)	1301
BseBI	CCWGG	5 cut(s)	123, 199, 651, 1027, 1272
BseDI	CCNNGG	3 cut(s)	121, 373, 1026
BseGI	GGATG	2 cut(s)	1003, 1302
BseJI	GATNNNNATC	1 cut(s)	1301
BseLI	CCNNNNNNNGG	2 cut(s)	146, 376
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	2 cut(s)	462, 1196
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	1298
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	5 cut(s)	54, 287, 820, 844, 1125
BseYI	CCCAGC	1 cut(s)	772
BshFI	GGCC	4 cut(s)	78, 139, 380, 1286
BshNI	GGYRCC	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	353
BslI	CCNNNNNNNGG	2 cut(s)	146, 376
BsmAI	GTCTC	3 cut(s)	146, 451, 692
BsmI	GAATGC	3 cut(s)	31, 1155, 1261
BsnI	GGCC	4 cut(s)	78, 139, 380, 1286
Bso31I	GGTCTC	2 cut(s)	146, 451
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	643, 919
BspANI	GGCC	4 cut(s)	78, 139, 380, 1286
BspCNI	CTCAG	2 cut(s)	461, 1195
BspLI	GGNNCC	3 cut(s)	95, 379, 1218
BspT107I	GGYRCC	1 cut(s)	93
BspTNI	GGTCTC	2 cut(s)	146, 451
BsrDI	GCAATG	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	3 cut(s)	121, 373, 1026
BssMI	GATC	2 cut(s)	643, 919
BssNAI	GTATAC	1 cut(s)	1061
BssNI	GRCGYC	1 cut(s)	94
BssT1I	CCWWGG	1 cut(s)	373
Bst1107I	GTATAC	1 cut(s)	1061
Bst2UI	CCWGG	5 cut(s)	123, 199, 651, 1027, 1272
Bst4CI	ACNGT	3 cut(s)	210, 1065, 1166
Bst6I	CTCTTC	3 cut(s)	518, 714, 725
BstACI	GRCGYC	1 cut(s)	94
BstBAI	YACGTR	1 cut(s)	993
BstC8I	GCNNGC	3 cut(s)	1013, 1259, 1284
BstDEI	CTNAG	5 cut(s)	73, 448, 812, 1046, 1182
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	1003, 1302
BstH2I	RGCGCY	1 cut(s)	97
BstHHI	GCGC	2 cut(s)	96, 1011
BstKTI	GATC	2 cut(s)	646, 922
BstMAI	GTCTC	3 cut(s)	146, 451, 692
BstMBI	GATC	2 cut(s)	643, 919
BstMWI	GCNNNNNNNGC	4 cut(s)	677, 805, 1288, 1297
BstNI	CCWGG	5 cut(s)	123, 199, 651, 1027, 1272
BstNSI	RCATGY	1 cut(s)	1015
BstSCI	CCNGG	5 cut(s)	121, 197, 649, 1025, 1270
BstSLI	GKGCMC	1 cut(s)	304
BstV1I	GCAGC	5 cut(s)	54, 287, 820, 844, 1125
BstZ17I	GTATAC	1 cut(s)	1061
BsuRI	GGCC	4 cut(s)	78, 139, 380, 1286
BtsCI	GGATG	2 cut(s)	1003, 1302
BtsI	GCAGTG	4 cut(s)	870, 1092, 1282, 1323
BtsIMutI	CAGTG	5 cut(s)	870, 1092, 1162, 1282, 1323
Cac8I	GCNNGC	3 cut(s)	1013, 1259, 1284
CfoI	GCGC	2 cut(s)	96, 1011
Cfr13I	GGNCC	2 cut(s)	350, 378
CseI	GACGC	1 cut(s)	238
CviAII	CATG	4 cut(s)	634, 673, 1012, 1240
DdeI	CTNAG	5 cut(s)	73, 448, 812, 1046, 1182
DinI	GGCGCC	1 cut(s)	95
DpnI	GATC	2 cut(s)	645, 921
DpnII	GATC	2 cut(s)	643, 919
EaeI	YGGCCR	1 cut(s)	1284
Eam1104I	CTCTTC	3 cut(s)	518, 714, 725
EarI	CTCTTC	3 cut(s)	518, 714, 725
Eco130I	CCWWGG	1 cut(s)	373
Eco147I	AGGCCT	1 cut(s)	78
Eco31I	GGTCTC	2 cut(s)	146, 451
Eco47I	GGWCC	1 cut(s)	350
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	378
EcoRI	GAATTC	1 cut(s)	954
EcoRII	CCWGG	5 cut(s)	121, 197, 649, 1025, 1270
EcoT14I	CCWWGG	1 cut(s)	373
EgeI	GGCGCC	1 cut(s)	95
EheI	GGCGCC	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	4 cut(s)	637, 676, 1015, 1243
FatI	CATG	4 cut(s)	633, 672, 1011, 1239
FblI	GTMKAC	1 cut(s)	1060
Fnu4HI	GCNGC	5 cut(s)	68, 276, 809, 858, 1139
FokI	GGATG	2 cut(s)	1010, 1289
Fsp4HI	GCNGC	5 cut(s)	68, 276, 809, 858, 1139
FspBI	CTAG	4 cut(s)	426, 926, 939, 1005
GlaI	GCGC	2 cut(s)	95, 1010
GluI	GCNGC	5 cut(s)	68, 276, 809, 858, 1139
GsaI	CCCAGC	1 cut(s)	776
HaeII	RGCGCY	1 cut(s)	97
HaeIII	GGCC	4 cut(s)	78, 139, 380, 1286
HapII	CCGG	1 cut(s)	353
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	2 cut(s)	96, 1011
Hin1I	GRCGYC	1 cut(s)	94
Hin1II	CATG	4 cut(s)	637, 676, 1015, 1243
Hin6I	GCGC	2 cut(s)	94, 1009
HinP1I	GCGC	2 cut(s)	94, 1009
HindIII	AAGCTT	4 cut(s)	161, 686, 797, 1289
HinfI	GANTC	6 cut(s)	55, 440, 733, 818, 979, 1033
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	3 cut(s)	1042, 1307, 1312
Hpy166II	GTNNAC	1 cut(s)	1061
Hpy188I	TCNGA	6 cut(s)	37, 54, 451, 563, 1079, 1151
Hpy188III	TCNNGA	4 cut(s)	641, 863, 1037, 1206
Hpy8I	GTNNAC	1 cut(s)	1061
HpyAV	CCTTC	8 cut(s)	568, 581, 670, 720, 944, 1078, 1126, 1212
HpyCH4III	ACNGT	3 cut(s)	210, 1065, 1166
HpyCH4IV	ACGT	2 cut(s)	992, 1095
HpyCH4V	TGCA	7 cut(s)	4, 31, 431, 514, 808, 875, 1261
HpyF10VI	GCNNNNNNNGC	4 cut(s)	677, 805, 1288, 1297
HpyF3I	CTNAG	5 cut(s)	73, 448, 812, 1046, 1182
HpySE526I	ACGT	2 cut(s)	992, 1095
Hsp92I	GRCGYC	1 cut(s)	94
Hsp92II	CATG	4 cut(s)	637, 676, 1015, 1243
HspAI	GCGC	2 cut(s)	94, 1009
KasI	GGCGCC	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	643, 919
LmnI	GCTCC	1 cut(s)	776
Lsp1109I	GCAGC	5 cut(s)	54, 287, 820, 844, 1125
LweI	GCATC	2 cut(s)	950, 1287
MaeI	CTAG	4 cut(s)	426, 926, 939, 1005
MaeII	ACGT	2 cut(s)	992, 1095
MaeIII	GTNAC	1 cut(s)	934
MalI	GATC	2 cut(s)	645, 921
MboI	GATC	2 cut(s)	643, 919
MfeI	CAATTG	1 cut(s)	965
MhlI	GDGCHC	1 cut(s)	304
MlsI	TGGCCA	1 cut(s)	1286
MluCI	AATT	8 cut(s)	181, 462, 591, 628, 802, 825, 954, 965
MluNI	TGGCCA	1 cut(s)	1286
Mly113I	GGCGCC	1 cut(s)	94
MlyI	GAGTC	2 cut(s)	449, 742
MmeI	TCCRAC	1 cut(s)	1109
Mox20I	TGGCCA	1 cut(s)	1286
MroXI	GAANNNNTTC	1 cut(s)	954
MscI	TGGCCA	1 cut(s)	1286
MseI	TTAA	5 cut(s)	225, 594, 801, 897, 1019
MslI	CAYNNNNRTG	4 cut(s)	912, 1164, 1167, 1238
Msp20I	TGGCCA	1 cut(s)	1286
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	5 cut(s)	123, 199, 651, 1027, 1272
MunI	CAATTG	1 cut(s)	965
Mva1269I	GAATGC	3 cut(s)	31, 1155, 1261
MvaI	CCWGG	5 cut(s)	123, 199, 651, 1027, 1272
MwoI	GCNNNNNNNGC	4 cut(s)	677, 805, 1288, 1297
NarI	GGCGCC	1 cut(s)	94
NdeII	GATC	2 cut(s)	643, 919
NlaIII	CATG	4 cut(s)	637, 676, 1015, 1243
NlaIV	GGNNCC	3 cut(s)	95, 379, 1218
NspI	RCATGY	1 cut(s)	1015
PaeI	GCATGC	1 cut(s)	1015
PceI	AGGCCT	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	2 cut(s)	915, 1101
PctI	GAATGC	3 cut(s)	31, 1155, 1261
PdmI	GAANNNNTTC	1 cut(s)	954
PfeI	GAWTC	4 cut(s)	55, 818, 979, 1033
PkrI	GCNGC	5 cut(s)	69, 277, 810, 859, 1140
PleI	GAGTC	2 cut(s)	448, 741
PluTI	GGCGCC	1 cut(s)	97
PpsI	GAGTC	2 cut(s)	448, 741
Ppu21I	YACGTR	1 cut(s)	993
Psp6I	CCWGG	5 cut(s)	121, 197, 649, 1025, 1270
PspFI	CCCAGC	1 cut(s)	772
PspGI	CCWGG	5 cut(s)	121, 197, 649, 1025, 1270
PspN4I	GGNNCC	3 cut(s)	95, 379, 1218
PspPI	GGNCC	2 cut(s)	350, 378
RseI	CAYNNNNRTG	4 cut(s)	912, 1164, 1167, 1238
SaqAI	TTAA	5 cut(s)	225, 594, 801, 897, 1019
SatI	GCNGC	5 cut(s)	68, 276, 809, 858, 1139
Sau3AI	GATC	2 cut(s)	643, 919
Sau96I	GGNCC	2 cut(s)	350, 378
SchI	GAGTC	2 cut(s)	449, 742
ScrFI	CCNGG	5 cut(s)	123, 199, 651, 1027, 1272
SduI	GDGCHC	1 cut(s)	304
SfaNI	GCATC	2 cut(s)	950, 1287
SfoI	GGCGCC	1 cut(s)	95
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	4 cut(s)	912, 1164, 1167, 1238
SmlI	CTYRAG	3 cut(s)	158, 614, 1292
SmoI	CTYRAG	3 cut(s)	158, 614, 1292
SphI	GCATGC	1 cut(s)	1015
Sse9I	AATT	8 cut(s)	181, 462, 591, 628, 802, 825, 954, 965
SseBI	AGGCCT	1 cut(s)	78
SspDI	GGCGCC	1 cut(s)	93
SspI	AATATT	2 cut(s)	220, 363
SspMI	CTAG	4 cut(s)	426, 926, 939, 1005
StuI	AGGCCT	1 cut(s)	78
StyD4I	CCNGG	5 cut(s)	121, 197, 649, 1025, 1270
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	3 cut(s)	210, 1065, 1166
TaiI	ACGT	2 cut(s)	995, 1098
TaqI	TCGA	2 cut(s)	958, 1104
TaqII	GACCGA	1 cut(s)	433
TasI	AATT	8 cut(s)	181, 462, 591, 628, 802, 825, 954, 965
TfiI	GAWTC	4 cut(s)	55, 818, 979, 1033
Tru1I	TTAA	5 cut(s)	225, 594, 801, 897, 1019
Tru9I	TTAA	5 cut(s)	225, 594, 801, 897, 1019
TscAI	CASTG	5 cut(s)	877, 1092, 1169, 1282, 1330
TseI	GCWGC	5 cut(s)	67, 275, 808, 857, 1138
TspDTI	ATGAA	5 cut(s)	6, 536, 689, 1148, 1228
TspRI	CASTG	5 cut(s)	877, 1092, 1169, 1282, 1330
VpaK11BI	GGWCC	1 cut(s)	350
XagI	CCTNNNNNAGG	1 cut(s)	144
XapI	RAATTY	2 cut(s)	181, 954
XceI	RCATGY	1 cut(s)	1015
XmiI	GTMKAC	1 cut(s)	1060
XmnI	GAANNNNTTC	1 cut(s)	954
XspI	CTAG	4 cut(s)	426, 926, 939, 1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.