Rroxscaffold_1G00015290

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010495
Physical Location & Seq
Forward (+)
19107645 .. 19113870
6226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00015290.1

Sequence Viewer

Length: 1347 bp
ATGGCAGCACCCGAGATTCCACAGGCGCCTTCCCCTGGCTCAATGGGTTGGCCTTATTTCGGAGAGACTTTCGAGCTCTACACTGAAAACCCAAATTCCTTCTTCACGGTCCGGCAAAAACGGTATGGGAGTATATTCAAGACCCATGTTTTGGGGTGTCCATGTGTGATGATAACAAGTCCAGAAGCAGCAAAAATGGTACTGGTGAGTCGGGCTCATCTGTTTAAGCCGACTTACCCCAGAGGCAAAGAGAGGATGATAGGACCGGAGGCTATATTCTTTCACCAAGGAGCCTATCACTCAAAGCTAAAGAAGCTCGTTCAGGCTTCACTTCTGCCCTCTGCAATAAAAGGTTCAGTCACAGAGATTGAGCAAATTGTTCTAAGCCTACTGCCCACATGGAAGAACAACACCATTAACACCTTGCAAGAGATGAAGAGGTATGCTTTTGATGTGGCAATGATTTCAGTTTTGGGCAACAAAAGGGACATTGAAGTGGAAGGGATAAAACATTTGTATCATTCCATTGAGAAGGGCTATAATTCCATGGCTCTTGATCTACCTGGAACTCCCTTTCACAAAGCCATGAAGGCAAGGAAGCTTCTGAATAAGGCATTGAGAGGACTGATACAAAAGAGAAGGGAGAGTGGTGATGCACAAACTGGTGGATTGCTTCAAGAACTGTTGAGAGCAAAAGATCAGAAACTTAATCTGAACCTCAGTGATTCTCAAATTGCTGATAATATCATCGGGGTTATCTTTGCTGCTCATGATACCACTGCTAGCGTTCTAACATGGCTCCTGAAATATCTTCATGACAATGACGATCTCCTAGAATCTGTTACGAGGGAACAAGAAGGAATTCAACGCAAAATGTTGAATGAGAAACGCGGGTTTACGTGGGATGATACTAGACGCATGCCTTTGACTAATCGGGTGATTCAAGAGACTCTAAGAACGGCAAGTATACTGTCATTCACATTCAGAGAGGCAGTGGAAGACGTAGAGTTTGAGGGTTACTTTATCCCTAGAGGTTGGAAGGTGCTGCCTCTTTTCAGAAGCATTCATCACTGTGCAGATTTCTTCCCTCAGCCTGAAAAGTTTGACCCTTCAAGATTTGAGGTTGCACCTCGACCCAACACTTACATGCCCTTTGGGAATGGCGTGCATTCCTGTCCAGGTAATGAGCTGGCCAAGCTTGAGATGCTGATCCTCCTTCACCACCTCACAACTACTTGCAGGTGGCACCTGATGGGCGATGACGATGGGATTCAGTATGGCCCTTTCCCAGTTCCCAAACAGGGATTACCCATCAAAGTGACTCTGAGGAACAAGAATAGGACCTGA

Protein Analysis

448

Amino Acids

50.96

Weight (kDa)

9.21

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 12 - 421 1.4e-70 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29090 AT2G29090 AT2G29090 AT2G29090
fragaria_vesca FvH4_3g36810 FvH4_3g36810 FvH4_3g36810
malus_domestica MD03G1088100.v1.1
prunus_persica Prupe.6G072400_v2.0.a1
pyrus_communis pycom03g06960
rosa_chinensis RchiOBHm_Chr5g0065871
rosa_laevigata RLG00000035823
rosa_multiflora Rmu_sc0006634.1_g000009
rosa_roxburghii Rroxscaffold_1G00015290
rosa_rugosa Rorug05G0374400 Rorug05G0374500
rosa_samantha Rh5AG433200 Rh5BG449400 Rh5CG471700 Rh5DG463000
rosa_wichuraiana Rw5G040620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1230
Acc36I ACCTGC 1 cut(s) 1230
AccB1I GGYRCC 2 cut(s) 25, 1245
AccB7I CCANNNNNTGG 1 cut(s) 151
AccI GTMKAC 1 cut(s) 967
AccII CGCG 1 cut(s) 891
AciI CCGC 1 cut(s) 891
AclWI GGATC 1 cut(s) 1204
AcoI YGGCCR 1 cut(s) 1191
AcsI RAATTY 2 cut(s) 94, 861
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 4 cut(s) 35, 59, 151, 1301
AgsI TTSAA 7 cut(s) 139, 494, 677, 866, 880, 944, 1113
AjnI CCWGG 3 cut(s) 34, 562, 1177
AluBI AGCT 6 cut(s) 76, 307, 316, 601, 1189, 1198
AluI AGCT 6 cut(s) 76, 307, 316, 601, 1189, 1198
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 2 cut(s) 59, 941
AlwI GGATC 1 cut(s) 1204
Ama87I CYCGRG 1 cut(s) 11
AoxI GGCC 3 cut(s) 50, 1191, 1279
ApeKI GCWGC 4 cut(s) 5, 188, 764, 1045
ApoI RAATTY 2 cut(s) 94, 861
ArsI GACNNNNNNTTYG 4 cut(s) 133, 165, 992, 1024
Asp700I GAANNNNTTC 1 cut(s) 861
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 4 cut(s) 109, 263, 1280, 1341
AsuHPI GGTGA 5 cut(s) 217, 275, 662, 949, 1211
AsuNHI GCTAGC 1 cut(s) 782
AvaI CYCGRG 1 cut(s) 11
AvaII GGWCC 3 cut(s) 109, 263, 1341
BaeI ACNNNNGTAYC 2 cut(s) 500, 533
BalI TGGCCA 1 cut(s) 1193
BanI GGYRCC 2 cut(s) 25, 1245
BanII GRGCYC 2 cut(s) 78, 217
BbsI GAAGAC 1 cut(s) 1005
Bbv12I GWGCWC 1 cut(s) 78
BbvCI CCTCAGC 1 cut(s) 1089
BbvI GCAGC 4 cut(s) 17, 200, 751, 1032
BccI CCATC 3 cut(s) 1246, 1259, 1319
BceAI ACGGC 1 cut(s) 975
BciT130I CCWGG 3 cut(s) 36, 564, 1179
BcoDI GTCTC 2 cut(s) 59, 941
BfaI CTAG 4 cut(s) 783, 833, 912, 1029
BfoI RGCGCY 1 cut(s) 29
BfuAI ACCTGC 1 cut(s) 1230
BglI GCCNNNNNGGC 1 cut(s) 590
BisI GCNGC 4 cut(s) 6, 189, 765, 1046
BlsI GCNGC 4 cut(s) 7, 190, 766, 1047
Bme1390I CCNGG 3 cut(s) 36, 564, 1179
Bme18I GGWCC 3 cut(s) 109, 263, 1341
BmeT110I CYCGRG 1 cut(s) 11
BmgT120I GGNCC 4 cut(s) 109, 263, 1280, 1341
BmiI GGNNCC 4 cut(s) 27, 292, 800, 1247
BmrFI CCNGG 3 cut(s) 36, 564, 1179
BmrI ACTGGG 1 cut(s) 1283
BmsI GCATC 2 cut(s) 643, 1194
BmtI GCTAGC 1 cut(s) 786
BmuI ACTGGG 1 cut(s) 1283
BpiI GAAGAC 1 cut(s) 1005
BplI GAGNNNNNCTC 2 cut(s) 199, 231
Bpu10I CCTNAGC 1 cut(s) 1089
BpuEI CTTGAG 1 cut(s) 1220
BsaAI YACGTR 1 cut(s) 900
BsaBI GATNNNNATC 1 cut(s) 1208
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 3 cut(s) 34, 286, 546
BsaWI WCCGGW 1 cut(s) 265
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 59, 151, 1301
Bse1I ACTGG 3 cut(s) 207, 667, 1289
Bse3DI GCAATG 1 cut(s) 465
Bse8I GATNNNNATC 1 cut(s) 1208
BseBI CCWGG 3 cut(s) 36, 564, 1179
BseDI CCNNGG 3 cut(s) 34, 286, 546
BseGI GGATG 2 cut(s) 261, 910
BseJI GATNNNNATC 1 cut(s) 1208
BseLI CCNNNNNNNGG 4 cut(s) 35, 59, 151, 1301
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 3 cut(s) 733, 1103, 1316
BseNI ACTGG 3 cut(s) 207, 667, 1289
BseXI GCAGC 4 cut(s) 17, 200, 751, 1032
BsgI GTGCAG 1 cut(s) 1095
Bsh1236I CGCG 1 cut(s) 891
BshFI GGCC 3 cut(s) 52, 1193, 1281
BshNI GGYRCC 2 cut(s) 25, 1245
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 11
BsiSI CCGG 2 cut(s) 112, 266
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 4 cut(s) 35, 59, 151, 1301
BsmAI GTCTC 2 cut(s) 59, 941
BsmFI GGGAC 1 cut(s) 500
BsmI GAATGC 2 cut(s) 1062, 1168
BsnI GGCC 3 cut(s) 52, 1193, 1281
BsoBI CYCGRG 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 78, 217
Bsp143I GATC 4 cut(s) 556, 697, 826, 1209
Bsp19I CCATGG 1 cut(s) 546
BspACI CCGC 1 cut(s) 891
BspANI GGCC 3 cut(s) 52, 1193, 1281
BspCNI CTCAG 3 cut(s) 732, 1102, 1317
BspFNI CGCG 1 cut(s) 891
BspHI TCATGA 2 cut(s) 769, 814
BspLI GGNNCC 4 cut(s) 27, 292, 800, 1247
BspMI ACCTGC 1 cut(s) 1230
BspOI GCTAGC 1 cut(s) 786
BspPI GGATC 1 cut(s) 1204
BspT107I GGYRCC 2 cut(s) 25, 1245
BsrDI GCAATG 1 cut(s) 465
BsrI ACTGG 3 cut(s) 207, 667, 1289
BssECI CCNNGG 3 cut(s) 34, 286, 546
BssMI GATC 4 cut(s) 556, 697, 826, 1209
BssNAI GTATAC 1 cut(s) 968
BssNI GRCGYC 1 cut(s) 26
BssT1I CCWWGG 2 cut(s) 286, 546
Bst1107I GTATAC 1 cut(s) 968
Bst2UI CCWGG 3 cut(s) 36, 564, 1179
Bst4CI ACNGT 5 cut(s) 109, 123, 684, 972, 1073
Bst6I CTCTTC 1 cut(s) 431
BstACI GRCGYC 1 cut(s) 26
BstBAI YACGTR 1 cut(s) 900
BstC8I GCNNGC 4 cut(s) 784, 920, 1166, 1191
BstDEI CTNAG 5 cut(s) 383, 719, 953, 1089, 1325
BstDSI CCRYGG 1 cut(s) 546
BstF5I GGATG 2 cut(s) 261, 910
BstFNI CGCG 1 cut(s) 891
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 4 cut(s) 559, 700, 829, 1212
BstMAI GTCTC 2 cut(s) 59, 941
BstMBI GATC 4 cut(s) 556, 697, 826, 1209
BstMWI GCNNNNNNNGC 4 cut(s) 313, 590, 1195, 1204
BstNI CCWGG 3 cut(s) 36, 564, 1179
BstNSI RCATGY 2 cut(s) 922, 1150
BstSCI CCNGG 3 cut(s) 34, 562, 1177
BstUI CGCG 1 cut(s) 891
BstV1I GCAGC 4 cut(s) 17, 200, 751, 1032
BstV2I GAAGAC 1 cut(s) 1005
BstZ17I GTATAC 1 cut(s) 968
BsuRI GGCC 3 cut(s) 52, 1193, 1281
BtgI CCRYGG 1 cut(s) 546
BtgZI GCGATG 1 cut(s) 1272
BtsCI GGATG 2 cut(s) 261, 910
BtsI GCAGTG 2 cut(s) 777, 999
BtsIMutI CAGTG 5 cut(s) 81, 727, 777, 999, 1069
BveI ACCTGC 1 cut(s) 1230
Cac8I GCNNGC 4 cut(s) 784, 920, 1166, 1191
CciI TCATGA 2 cut(s) 769, 814
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 4 cut(s) 109, 263, 1280, 1341
CpoI CGGWCCG 1 cut(s) 109
CseI GACGC 1 cut(s) 924
Csp6I GTAC 1 cut(s) 200
CspI CGGWCCG 1 cut(s) 109
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 5 cut(s) 383, 719, 953, 1089, 1325
DinI GGCGCC 1 cut(s) 27
DpnI GATC 4 cut(s) 558, 699, 828, 1211
DpnII GATC 4 cut(s) 556, 697, 826, 1209
EaeI YGGCCR 1 cut(s) 1191
Eam1104I CTCTTC 1 cut(s) 431
EarI CTCTTC 1 cut(s) 431
Ecl136II GAGCTC 1 cut(s) 76
Eco130I CCWWGG 2 cut(s) 286, 546
Eco24I GRGCYC 2 cut(s) 78, 217
Eco47I GGWCC 3 cut(s) 109, 263, 1341
Eco53kI GAGCTC 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 1341
EcoRI GAATTC 1 cut(s) 861
EcoRII CCWGG 3 cut(s) 34, 562, 1177
EcoT14I CCWWGG 2 cut(s) 286, 546
EcoT38I GRGCYC 2 cut(s) 78, 217
EgeI GGCGCC 1 cut(s) 27
EheI GGCGCC 1 cut(s) 27
ErhI CCWWGG 2 cut(s) 286, 546
FaqI GGGAC 1 cut(s) 500
FauI CCCGC 1 cut(s) 884
FblI GTMKAC 1 cut(s) 967
Fnu4HI GCNGC 4 cut(s) 6, 189, 765, 1046
FokI GGATG 2 cut(s) 268, 917
FriOI GRGCYC 2 cut(s) 78, 217
Fsp4HI GCNGC 4 cut(s) 6, 189, 765, 1046
FspBI CTAG 4 cut(s) 783, 833, 912, 1029
GlaI GCGC 1 cut(s) 27
GluI GCNGC 4 cut(s) 6, 189, 765, 1046
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 3 cut(s) 52, 1193, 1281
HapII CCGG 2 cut(s) 112, 266
HgaI GACGC 1 cut(s) 924
HhaI GCGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 26
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HindIII AAGCTT 2 cut(s) 599, 1196
HinfI GANTC 8 cut(s) 16, 208, 725, 836, 940, 949, 1270, 1321
HpaII CCGG 2 cut(s) 112, 266
HphI GGTGA 5 cut(s) 217, 275, 662, 949, 1211
Hpy166II GTNNAC 2 cut(s) 897, 968
Hpy188I TCNGA 7 cut(s) 62, 606, 702, 714, 986, 1058, 1326
Hpy188III TCNNGA 9 cut(s) 139, 182, 554, 677, 770, 802, 815, 944, 1113
Hpy8I GTNNAC 2 cut(s) 897, 968
HpyCH4III ACNGT 5 cut(s) 109, 123, 684, 972, 1073
HpyCH4IV ACGT 2 cut(s) 899, 1002
HpyCH4V TGCA 7 cut(s) 344, 427, 656, 1076, 1127, 1168, 1239
HpyF10VI GCNNNNNNNGC 4 cut(s) 313, 590, 1195, 1204
HpyF3I CTNAG 5 cut(s) 383, 719, 953, 1089, 1325
HpySE526I ACGT 2 cut(s) 899, 1002
Hsp92I GRCGYC 1 cut(s) 26
HspAI GCGC 1 cut(s) 26
KasI GGCGCC 1 cut(s) 25
Kzo9I GATC 4 cut(s) 556, 697, 826, 1209
LmnI GCTCC 2 cut(s) 290, 804
Lsp1109I GCAGC 4 cut(s) 17, 200, 751, 1032
LweI GCATC 2 cut(s) 643, 1194
MaeI CTAG 4 cut(s) 783, 833, 912, 1029
MaeII ACGT 2 cut(s) 899, 1002
MaeIII GTNAC 4 cut(s) 358, 841, 1016, 1318
MalI GATC 4 cut(s) 558, 699, 828, 1211
MboI GATC 4 cut(s) 556, 697, 826, 1209
MboII GAAGA 6 cut(s) 94, 415, 448, 803, 1010, 1075
MhlI GDGCHC 2 cut(s) 78, 217
MlsI TGGCCA 1 cut(s) 1193
MluCI AATT 5 cut(s) 94, 375, 541, 732, 861
MluNI TGGCCA 1 cut(s) 1193
Mly113I GGCGCC 1 cut(s) 26
MlyI GAGTC 3 cut(s) 217, 943, 1315
MmeI TCCRAC 1 cut(s) 1016
Mox20I TGGCCA 1 cut(s) 1193
MroXI GAANNNNTTC 1 cut(s) 861
MscI TGGCCA 1 cut(s) 1193
MseI TTAA 3 cut(s) 225, 417, 708
MslI CAYNNNNRTG 5 cut(s) 494, 819, 1071, 1145, 1316
Msp20I TGGCCA 1 cut(s) 1193
MspI CCGG 2 cut(s) 112, 266
MspR9I CCNGG 3 cut(s) 36, 564, 1179
Mva1269I GAATGC 2 cut(s) 1062, 1168
MvaI CCWGG 3 cut(s) 36, 564, 1179
MvnI CGCG 1 cut(s) 891
MwoI GCNNNNNNNGC 4 cut(s) 313, 590, 1195, 1204
NarI GGCGCC 1 cut(s) 26
NcoI CCATGG 1 cut(s) 546
NdeII GATC 4 cut(s) 556, 697, 826, 1209
NheI GCTAGC 1 cut(s) 782
NlaIV GGNNCC 4 cut(s) 27, 292, 800, 1247
NmuCI GTSAC 2 cut(s) 358, 1318
NspI RCATGY 2 cut(s) 922, 1150
PaeI GCATGC 1 cut(s) 922
PagI TCATGA 2 cut(s) 769, 814
PaqCI CACCTGC 1 cut(s) 1230
PctI GAATGC 2 cut(s) 1062, 1168
PdmI GAANNNNTTC 1 cut(s) 861
PfeI GAWTC 5 cut(s) 16, 725, 836, 940, 1270
PflMI CCANNNNNTGG 1 cut(s) 151
PkrI GCNGC 4 cut(s) 7, 190, 766, 1047
PleI GAGTC 3 cut(s) 216, 943, 1315
PluTI GGCGCC 1 cut(s) 29
PpsI GAGTC 3 cut(s) 216, 943, 1315
Ppu21I YACGTR 1 cut(s) 900
PpuMI RGGWCCY 1 cut(s) 1341
Psp124BI GAGCTC 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 1341
Psp6I CCWGG 3 cut(s) 34, 562, 1177
PspGI CCWGG 3 cut(s) 34, 562, 1177
PspN4I GGNNCC 4 cut(s) 27, 292, 800, 1247
PspPI GGNCC 4 cut(s) 109, 263, 1280, 1341
PspPPI RGGWCCY 1 cut(s) 1341
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
RseI CAYNNNNRTG 5 cut(s) 494, 819, 1071, 1145, 1316
Rsr2I CGGWCCG 1 cut(s) 109
RsrII CGGWCCG 1 cut(s) 109
SacI GAGCTC 1 cut(s) 78
SaqAI TTAA 3 cut(s) 225, 417, 708
SatI GCNGC 4 cut(s) 6, 189, 765, 1046
Sau3AI GATC 4 cut(s) 556, 697, 826, 1209
Sau96I GGNCC 4 cut(s) 109, 263, 1280, 1341
SchI GAGTC 3 cut(s) 217, 943, 1315
ScrFI CCNGG 3 cut(s) 36, 564, 1179
SduI GDGCHC 2 cut(s) 78, 217
SfaNI GCATC 2 cut(s) 643, 1194
SfoI GGCGCC 1 cut(s) 27
SinI GGWCC 3 cut(s) 109, 263, 1341
SmiMI CAYNNNNRTG 5 cut(s) 494, 819, 1071, 1145, 1316
SmlI CTYRAG 1 cut(s) 1199
SmoI CTYRAG 1 cut(s) 1199
SphI GCATGC 1 cut(s) 922
Sse9I AATT 5 cut(s) 94, 375, 541, 732, 861
SsiI CCGC 1 cut(s) 891
SspDI GGCGCC 1 cut(s) 25
SspMI CTAG 4 cut(s) 783, 833, 912, 1029
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 3 cut(s) 34, 562, 1177
StyI CCWWGG 2 cut(s) 286, 546
TaaI ACNGT 5 cut(s) 109, 123, 684, 972, 1073
TaiI ACGT 2 cut(s) 902, 1005
TaqI TCGA 2 cut(s) 72, 1132
TasI AATT 5 cut(s) 94, 375, 541, 732, 861
TfiI GAWTC 5 cut(s) 16, 725, 836, 940, 1270
Tru1I TTAA 3 cut(s) 225, 417, 708
Tru9I TTAA 3 cut(s) 225, 417, 708
TscAI CASTG 5 cut(s) 88, 727, 784, 999, 1076
TseFI GTSAC 2 cut(s) 358, 1318
TseI GCWGC 4 cut(s) 5, 188, 764, 1045
Tsp45I GTSAC 2 cut(s) 358, 1318
TspDTI ATGAA 4 cut(s) 449, 602, 803, 1055
TspRI CASTG 5 cut(s) 88, 727, 784, 999, 1076
Van91I CCANNNNNTGG 1 cut(s) 151
VpaK11BI GGWCC 3 cut(s) 109, 263, 1341
XapI RAATTY 2 cut(s) 94, 861
XceI RCATGY 2 cut(s) 922, 1150
XmiI GTMKAC 1 cut(s) 967
XmnI GAANNNNTTC 1 cut(s) 861
XspI CTAG 4 cut(s) 783, 833, 912, 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.