Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0019316

Physical Location & Seq

Genomic Coordinates Forward (+)

5568571 .. 5569107

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g06990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGTTTGGTTCCTAGAAGTGATGAGATTTTTACCTACACTACTGCTTTTGGGAAGTTTCTTGTTAGTGCAGTTGGGACGAGGTATTGGTGGACGAAGTGCCCGCGGAATATTCAATATAGGAAAAGCCCAAGTTATGAAAGTAGATAAAAATGCAAAGAACCAGATCTATTTTAAAGATGTTACTGGTTGCGACGAAGCGAAGCAGGAAATCATGGAATTTGTGCACTTTCTCAAGACTCCTCCGAAATATGAGGATTTGGGAGCCAAAATTCCCAAAGGTGCTTTGTTGGTAGGCCCTCCAGGCACTGGAAAGACCCTTCTAGCAAAAGCAACTGCAGGGGAATCTGGTGTTCCGTTTCTATCTATATCTGGATCAGACTTGGTGGCTTGTCAGGTTCCAATGATGAGCGTGAGAGTACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

142

Amino Acids

15.22

Weight (kDa)

9.52

Isoelectric Point (pI)

21.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019316)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g06990
rosa_chinensis	RchiOBHm_Chr2g0093611
rosa_multiflora	Rmu_sc0002126.1_g000021 Rmu_sc0021295.1_g000003
rosa_samantha	Rh2AG084400 Rh2BG085000 Rh2CG087300 Rh2DG083000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	308
AccII	CGCG	1 cut(s)	105
AciI	CCGC	2 cut(s)	103, 105
AclWI	GGATC	1 cut(s)	382
AcsI	RAATTY	2 cut(s)	218, 270
AfaI	GTAC	1 cut(s)	420
AfiI	CCNNNNNNNGG	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	301
Alw21I	GWGCWC	1 cut(s)	228
Alw44I	GTGCAC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	382
AlwNI	CAGNNNCTG	1 cut(s)	308
AoxI	GGCC	1 cut(s)	295
ApaLI	GTGCAC	1 cut(s)	224
ApoI	RAATTY	2 cut(s)	218, 270
AspS9I	GGNCC	1 cut(s)	296
BaeGI	GKGCMC	2 cut(s)	103, 228
Bbv12I	GWGCWC	1 cut(s)	228
BciT130I	CCWGG	1 cut(s)	303
BfaI	CTAG	2 cut(s)	14, 323
BfmI	CTRYAG	1 cut(s)	336
BglI	GCCNNNNNGGC	1 cut(s)	303
BglII	AGATCT	1 cut(s)	165
BmcAI	AGTACT	1 cut(s)	420
Bme1390I	CCNGG	1 cut(s)	303
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	3 cut(s)	11, 265, 399
BmrFI	CCNGG	1 cut(s)	303
BpmI	CTGGAG	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse1I	ACTGG	2 cut(s)	190, 313
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseNI	ACTGG	2 cut(s)	190, 313
BseRI	GAGGAG	1 cut(s)	231
BseSI	GKGCMC	2 cut(s)	103, 228
BsgI	GTGCAG	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	228
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	297
Bsp1286I	GDGCHC	2 cut(s)	103, 228
Bsp143I	GATC	2 cut(s)	165, 374
BspACI	CCGC	2 cut(s)	103, 105
BspANI	GGCC	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	11, 265, 399
BspMAI	CTGCAG	1 cut(s)	340
BspPI	GGATC	1 cut(s)	382
BsrI	ACTGG	2 cut(s)	190, 313
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	165, 374
Bst2UI	CCWGG	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	103
BstDSI	CCRYGG	1 cut(s)	103
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	2 cut(s)	168, 377
BstMBI	GATC	2 cut(s)	165, 374
BstMWI	GCNNNNNNNGC	1 cut(s)	303
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	301
BstSFI	CTRYAG	1 cut(s)	336
BstSLI	GKGCMC	2 cut(s)	103, 228
BstUI	CGCG	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	103
CaiI	CAGNNNCTG	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	296
Cfr42I	CCGCGG	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	4 cut(s)	128, 266, 297, 389
CviKI_1	RGCY	4 cut(s)	128, 266, 297, 389
CviQI	GTAC	1 cut(s)	419
DpnI	GATC	2 cut(s)	167, 376
DpnII	GATC	2 cut(s)	165, 374
DraI	TTTAAA	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	301
FaeI	CATG	1 cut(s)	217
FaiI	YATR	5 cut(s)	119, 137, 215, 252, 368
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	1 cut(s)	213
FauI	CCCGC	1 cut(s)	110
FspBI	CTAG	2 cut(s)	14, 323
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	297
Hin1II	CATG	1 cut(s)	217
HinfI	GANTC	2 cut(s)	238, 344
Hpy166II	GTNNAC	2 cut(s)	92, 226
Hpy188I	TCNGA	2 cut(s)	246, 379
Hpy188III	TCNNGA	2 cut(s)	235, 372
Hpy8I	GTNNAC	2 cut(s)	92, 226
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	329
HpyCH4V	TGCA	4 cut(s)	70, 155, 226, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	217
KspI	CCGCGG	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	165, 374
LmnI	GCTCC	1 cut(s)	263
MaeI	CTAG	2 cut(s)	14, 323
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	167, 376
MboI	GATC	2 cut(s)	165, 374
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	2 cut(s)	103, 228
MluCI	AATT	2 cut(s)	218, 270
MlyI	GAGTC	1 cut(s)	232
MnlI	CCTC	4 cut(s)	74, 247, 252, 309
MseI	TTAA	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	303
NdeII	GATC	2 cut(s)	165, 374
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	3 cut(s)	11, 265, 399
PfeI	GAWTC	1 cut(s)	344
PflMI	CCANNNNNTGG	1 cut(s)	308
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	3 cut(s)	11, 265, 399
PspPI	GGNCC	1 cut(s)	296
PstI	CTGCAG	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	165
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
SacII	CCGCGG	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	165, 374
Sau96I	GGNCC	1 cut(s)	296
ScaI	AGTACT	1 cut(s)	420
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	2 cut(s)	103, 228
SetI	ASST	4 cut(s)	37, 85, 283, 399
SfcI	CTRYAG	1 cut(s)	336
Sfr303I	CCGCGG	1 cut(s)	106
SgrBI	CCGCGG	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	218, 270
SsiI	CCGC	2 cut(s)	103, 105
SspI	AATATT	1 cut(s)	111
SspMI	CTAG	2 cut(s)	14, 323
StyD4I	CCNGG	1 cut(s)	301
TasI	AATT	2 cut(s)	218, 270
TatI	WGTACW	1 cut(s)	418
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	152
TspGWI	ACGGA	1 cut(s)	345
TspRI	CASTG	1 cut(s)	313
Van91I	CCANNNNNTGG	1 cut(s)	308
VneI	GTGCAC	1 cut(s)	224
XapI	RAATTY	2 cut(s)	218, 270
XspI	CTAG	2 cut(s)	14, 323
ZrmI	AGTACT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.