Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0019316

Physical Location & Seq

Genomic Coordinates Reverse (-)

7141799 .. 7149896

Gene Structure 8098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG084400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGATTGCTACTTTGCTTATGAAAGTTGCAGGAGCTGATCAAGAACATCGACCTAGCGGTCTGAAATTCAATACAGCATTCAAAGATGTCAAGGGTGTTGATGAGGCTAAAGCTGAGCTCGAGGAAATTGTTCACTATCTTCGAAATCCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

51

Amino Acids

5.71

Weight (kDa)

5.59

Isoelectric Point (pI)

29.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019316)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g06990
rosa_chinensis	RchiOBHm_Chr2g0093611
rosa_multiflora	Rmu_sc0002126.1_g000021 Rmu_sc0021295.1_g000003
rosa_samantha	Rh2AG084400 Rh2BG085000 Rh2CG087300 Rh2DG083000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	57
AciI	CCGC	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	70, 82
AluBI	AGCT	3 cut(s)	35, 113, 118
AluI	AGCT	3 cut(s)	35, 113, 118
Alw21I	GWGCWC	1 cut(s)	120
AlwNI	CAGNNNCTG	1 cut(s)	35
Ama87I	CYCGRG	2 cut(s)	119, 149
ApoI	RAATTY	1 cut(s)	65
Asp700I	GAANNNNTTC	1 cut(s)	129
AsuII	TTCGAA	1 cut(s)	142
AvaI	CYCGRG	2 cut(s)	119, 149
BanII	GRGCYC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	120
BclI	TGATCA	1 cut(s)	37
BfaI	CTAG	1 cut(s)	54
BlpI	GCTNAGC	1 cut(s)	114
BmeT110I	CYCGRG	2 cut(s)	119, 149
Bpu1102I	GCTNAGC	1 cut(s)	114
Bpu14I	TTCGAA	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	2 cut(s)	119, 149
BsmI	GAATGC	1 cut(s)	77
BsoBI	CYCGRG	2 cut(s)	119, 149
Bsp119I	TTCGAA	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	37
Bsp1720I	GCTNAGC	1 cut(s)	114
BspACI	CCGC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	106
BspT104I	TTCGAA	1 cut(s)	142
BssMI	GATC	1 cut(s)	37
BstBI	TTCGAA	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	114
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
CaiI	CAGNNNCTG	1 cut(s)	35
CviJI	RGCY	4 cut(s)	35, 107, 113, 118
CviKI_1	RGCY	4 cut(s)	35, 107, 113, 118
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
DrdI	GACNNNNNNGTC	1 cut(s)	57
DseDI	GACNNNNNNGTC	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	118
Eco88I	CYCGRG	2 cut(s)	119, 149
EcoICRI	GAGCTC	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	120
FaiI	YATR	1 cut(s)	20
FbaI	TGATCA	1 cut(s)	37
FriOI	GRGCYC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	54
FspEI	CC	7 cut(s)	15, 42, 66, 77, 78, 89, 107
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	63
Hpy188III	TCNNGA	2 cut(s)	41, 149
Hpy8I	GTNNAC	1 cut(s)	133
HpyCH4V	TGCA	1 cut(s)	29
HpyF3I	CTNAG	1 cut(s)	114
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	1 cut(s)	15
MaeI	CTAG	1 cut(s)	54
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	2 cut(s)	65, 126
MnlI	CCTC	2 cut(s)	97, 115
MroXI	GAANNNNTTC	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	77
NdeII	GATC	1 cut(s)	37
NspV	TTCGAA	1 cut(s)	142
PaeR7I	CTCGAG	1 cut(s)	119
PctI	GAATGC	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	129
Psp124BI	GAGCTC	1 cut(s)	120
PspXI	VCTCGAGB	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	35
SacI	GAGCTC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	4 cut(s)	37, 55, 115, 120
Sfr274I	CTCGAG	1 cut(s)	119
SfuI	TTCGAA	1 cut(s)	142
SgeI	CNNG	6 cut(s)	42, 53, 66, 103, 131, 133
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	65, 126
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	1 cut(s)	54
SstI	GAGCTC	1 cut(s)	120
TaqI	TCGA	3 cut(s)	49, 120, 142
TasI	AATT	2 cut(s)	65, 126
TspDTI	ATGAA	1 cut(s)	35
XapI	RAATTY	1 cut(s)	65
XhoI	CTCGAG	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.