Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0019316

Physical Location & Seq

Genomic Coordinates Reverse (-)

6629481 .. 6629793

Gene Structure 313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG085000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGAAATCCAATACAACATTCAAAGATGTCAAGGGTGTTGATGAGGCTAAAGCTGAGCTCGAGGAAATTGTTCACTATCTTCGAAATCCCGAGCAATTCACCCGCTTAGGAGGTAGACTTCCGAAAGGTGTTTTACTTGTCGGTCCACCCGGCACAGGTAAGACTATGTTAGCCAAAGCTGTTGCAACAGAAGCCGACGTTACCTTTCTTCGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04139 map04139

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

72

Amino Acids

7.87

Weight (kDa)

9.16

Isoelectric Point (pI)

30.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	44 - 72	2.4e-09	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0019316)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g06990
rosa_chinensis	RchiOBHm_Chr2g0093611
rosa_multiflora	Rmu_sc0002126.1_g000021 Rmu_sc0021295.1_g000003
rosa_samantha	Rh2AG084400 Rh2BG085000 Rh2CG087300 Rh2DG083000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	115
AciI	CCGC	1 cut(s)	103
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	3 cut(s)	53, 58, 179
AluI	AGCT	3 cut(s)	53, 58, 179
Alw21I	GWGCWC	1 cut(s)	60
Ama87I	CYCGRG	2 cut(s)	59, 89
Asp700I	GAANNNNTTC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	91
AsuII	TTCGAA	1 cut(s)	82
AvaI	CYCGRG	2 cut(s)	59, 89
AvaII	GGWCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	60
BcnI	CCSGG	1 cut(s)	150
BlpI	GCTNAGC	1 cut(s)	54
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	143
BmeT110I	CYCGRG	2 cut(s)	59, 89
BmgT120I	GGNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	106
Bpu1102I	GCTNAGC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	82
BpuMI	CCSGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	2 cut(s)	59, 89
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	155
BsoBI	CYCGRG	2 cut(s)	59, 89
Bsp119I	TTCGAA	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp1720I	GCTNAGC	1 cut(s)	54
BspACI	CCGC	1 cut(s)	103
BspCNI	CTCAG	1 cut(s)	46
BspT104I	TTCGAA	1 cut(s)	82
BstBI	TTCGAA	1 cut(s)	82
BstDEI	CTNAG	2 cut(s)	54, 106
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	143
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	6 cut(s)	47, 53, 58, 173, 179, 194
CviKI_1	RGCY	6 cut(s)	47, 53, 58, 173, 179, 194
DdeI	CTNAG	2 cut(s)	54, 106
Ecl136II	GAGCTC	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	143
Eco53kI	GAGCTC	1 cut(s)	58
Eco88I	CYCGRG	2 cut(s)	59, 89
EcoICRI	GAGCTC	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	60
FaeI	CATG	1 cut(s)	217
FaiI	YATR	2 cut(s)	167, 215
FatI	CATG	1 cut(s)	213
FauI	CCCGC	1 cut(s)	110
FblI	GTMKAC	1 cut(s)	115
FriOI	GRGCYC	1 cut(s)	60
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	1 cut(s)	217
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	3 cut(s)	73, 116, 146
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	3 cut(s)	73, 116, 146
Hpy99I	CGWCG	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	2 cut(s)	54, 106
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	217
LpnPI	CCDG	2 cut(s)	141, 163
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	199
MboII	GAAGA	2 cut(s)	71, 200
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	2 cut(s)	66, 95
MnlI	CCTC	3 cut(s)	37, 55, 104
MroXI	GAANNNNTTC	1 cut(s)	69
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	191
NciI	CCSGG	1 cut(s)	150
NlaIII	CATG	1 cut(s)	217
NspI	RCATGY	1 cut(s)	217
NspV	TTCGAA	1 cut(s)	82
PaeR7I	CTCGAG	1 cut(s)	59
PdmI	GAANNNNTTC	1 cut(s)	69
Psp124BI	GAGCTC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	143
PspXI	VCTCGAGB	1 cut(s)	59
SacI	GAGCTC	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	8 cut(s)	55, 60, 115, 130, 160, 181, 201, 206
Sfr274I	CTCGAG	1 cut(s)	59
SfuI	TTCGAA	1 cut(s)	82
SinI	GGWCC	1 cut(s)	143
SlaI	CTCGAG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	66, 95
SsiI	CCGC	1 cut(s)	103
SstI	GAGCTC	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	148
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	2 cut(s)	60, 82
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	2 cut(s)	66, 95
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	143
XceI	RCATGY	1 cut(s)	217
XhoI	CTCGAG	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.