Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011729

Physical Location & Seq

Genomic Coordinates Forward (+)

6772625 .. 6773088

Gene Structure 464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGAGGCAGAAGCGGCCCCGGCTGAGCAGCCGCAGGCGGCGGCGCAGCCAACCTTGTCCCGGAAAAAGATGACCAAGCAGTTAACGGGAAAGCGCGACGATACGCCTTTACATTCCGCGGCGAGGTCAGGAAGGATGGCGGTGGTGATGGATATCCTTGAAAATACAGAAGAGGGTGAGTTGAAGGAGTTATTGGCAAAGCAAAACTCATCTGATGAAACAGCACTATATGTTGCTGCAGAATATGGTTATGTTGATTTGGTCAGGGAGATGATCGAGTACTATGATCTCGCCGACGCCGGAATCAAGGCGAGAAACGGGTTTGATGCGTTCCACATTGCTGCCAAACAAGGGGATATGGGTGTGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

124

Amino Acids

13.44

Weight (kDa)

4.8

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07710 AT1G07710 AT5G60070
fragaria_vesca	FvH4_3g34650 FvH4_3g34650
malus_domestica	MD03G1103100.v1.1 MD11G1116700.v1.1
prunus_persica	Prupe.6G087100_v2.0.a1
pyrus_communis	pycom03g08370 pycom11g09810
rosa_chinensis	RchiOBHm_Chr5g0062351
rosa_laevigata	RLG00000035552
rosa_multiflora	Rmu_sc0010221.1_g000002
rosa_roxburghii	Rroxscaffold_1G00018330
rosa_rugosa	Rorug05G0348900
rosa_samantha	Rh5BG422800 Rh5CG446800 Rh5DG437600
rosa_wichuraiana	Rw5G038520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	96, 119
AciI	CCGC	7 cut(s)	14, 32, 38, 41, 117, 119, 140
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	3 cut(s)	60, 123, 351
AgsI	TTSAA	2 cut(s)	161, 184
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	4 cut(s)	28, 46, 236, 341
AspLEI	GCGC	2 cut(s)	46, 96
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	2 cut(s)	20, 61
AsuHPI	GGTGA	2 cut(s)	157, 188
BbvI	GCAGC	4 cut(s)	40, 58, 223, 328
BccI	CCATC	2 cut(s)	130, 142
BcnI	CCSGG	2 cut(s)	20, 61
BfmI	CTRYAG	1 cut(s)	237
BisI	GCNGC	9 cut(s)	15, 29, 32, 39, 42, 47, 120, 237, 342
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	9 cut(s)	16, 30, 33, 40, 43, 48, 121, 238, 343
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	20, 61
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	2 cut(s)	20, 61
BmsI	GCATC	1 cut(s)	316
Bpu1102I	GCTNAGC	1 cut(s)	24
BpuMI	CCSGG	2 cut(s)	20, 61
BsaBI	GATNNNNATC	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	18, 117
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 123, 351
Bse3DI	GCAATG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	18, 117
BseGI	GGATG	1 cut(s)	141
BseJI	GATNNNNATC	1 cut(s)	152
BseLI	CCNNNNNNNGG	3 cut(s)	60, 123, 351
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	15
BseXI	GCAGC	4 cut(s)	40, 58, 223, 328
Bsh1236I	CGCG	2 cut(s)	96, 119
BshFI	GGCC	1 cut(s)	17
BsiSI	CCGG	3 cut(s)	20, 61, 300
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	3 cut(s)	60, 123, 351
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	273, 286
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	7 cut(s)	14, 32, 38, 41, 117, 119, 140
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	16
BspFNI	CGCG	2 cut(s)	96, 119
BspLI	GGNNCC	1 cut(s)	18
BspMAI	CTGCAG	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	336
BssECI	CCNNGG	2 cut(s)	18, 117
BssMI	GATC	2 cut(s)	273, 286
BssNI	GRCGYC	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	24
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	141
BstFNI	CGCG	2 cut(s)	96, 119
BstHHI	GCGC	2 cut(s)	46, 96
BstKTI	GATC	2 cut(s)	276, 289
BstMBI	GATC	2 cut(s)	273, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 20
BstSCI	CCNGG	2 cut(s)	18, 59
BstSFI	CTRYAG	1 cut(s)	237
BstUI	CGCG	2 cut(s)	96, 119
BstV1I	GCAGC	4 cut(s)	40, 58, 223, 328
BsuRI	GGCC	1 cut(s)	17
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	36
CfoI	GCGC	2 cut(s)	46, 96
Cfr13I	GGNCC	1 cut(s)	16
Cfr42I	CCGCGG	1 cut(s)	120
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	280
CviJI	RGCY	4 cut(s)	17, 23, 31, 49
CviKI_1	RGCY	4 cut(s)	17, 23, 31, 49
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	2 cut(s)	275, 288
DpnII	GATC	2 cut(s)	273, 286
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco32I	GATATC	1 cut(s)	154
EcoRV	GATATC	1 cut(s)	154
FaiI	YATR	6 cut(s)	229, 231, 246, 252, 285, 359
FaqI	GGGAC	1 cut(s)	43
Fnu4HI	GCNGC	9 cut(s)	15, 29, 32, 39, 42, 47, 120, 237, 342
FokI	GGATG	1 cut(s)	148
Fsp4HI	GCNGC	9 cut(s)	15, 29, 32, 39, 42, 47, 120, 237, 342
GlaI	GCGC	2 cut(s)	45, 95
GluI	GCNGC	9 cut(s)	15, 29, 32, 39, 42, 47, 120, 237, 342
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	3 cut(s)	20, 61, 300
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	2 cut(s)	46, 96
Hin1I	GRCGYC	1 cut(s)	297
Hin6I	GCGC	2 cut(s)	44, 94
HinP1I	GCGC	2 cut(s)	44, 94
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	1 cut(s)	303
HpaI	GTTAAC	1 cut(s)	84
HpaII	CCGG	3 cut(s)	20, 61, 300
HphI	GGTGA	2 cut(s)	157, 188
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	129
Hpy8I	GTNNAC	1 cut(s)	84
Hpy99I	CGWCG	2 cut(s)	101, 299
HpyAV	CCTTC	2 cut(s)	126, 178
HpyCH4V	TGCA	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 20
HpyF3I	CTNAG	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	297
HspAI	GCGC	2 cut(s)	44, 94
KspAI	GTTAAC	1 cut(s)	84
KspI	CCGCGG	1 cut(s)	120
Kzo9I	GATC	2 cut(s)	273, 286
LpnPI	CCDG	6 cut(s)	20, 33, 74, 114, 250, 313
Lsp1109I	GCAGC	4 cut(s)	40, 58, 223, 328
LweI	GCATC	1 cut(s)	316
MalI	GATC	2 cut(s)	275, 288
MboI	GATC	2 cut(s)	273, 286
MboII	GAAGA	1 cut(s)	182
MnlI	CCTC	2 cut(s)	117, 166
MseI	TTAA	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	3 cut(s)	20, 61, 300
MspR9I	CCNGG	2 cut(s)	20, 61
MvnI	CGCG	2 cut(s)	96, 119
MwoI	GCNNNNNNNGC	2 cut(s)	14, 20
NciI	CCSGG	2 cut(s)	20, 61
NdeII	GATC	2 cut(s)	273, 286
NlaIV	GGNNCC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	303
PfoI	TCCNGGA	1 cut(s)	59
PkrI	GCNGC	9 cut(s)	16, 30, 33, 40, 43, 48, 121, 238, 343
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	241
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SacII	CCGCGG	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	9 cut(s)	15, 29, 32, 39, 42, 47, 120, 237, 342
Sau3AI	GATC	2 cut(s)	273, 286
Sau96I	GGNCC	1 cut(s)	16
ScaI	AGTACT	1 cut(s)	281
ScrFI	CCNGG	2 cut(s)	20, 61
SetI	ASST	2 cut(s)	56, 128
SfaNI	GCATC	1 cut(s)	316
SfcI	CTRYAG	1 cut(s)	237
Sfr303I	CCGCGG	1 cut(s)	120
SgrBI	CCGCGG	1 cut(s)	120
SsiI	CCGC	7 cut(s)	14, 32, 38, 41, 117, 119, 140
StyD4I	CCNGG	2 cut(s)	18, 59
TaqI	TCGA	1 cut(s)	276
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	5 cut(s)	17, 34, 41, 44, 122
TfiI	GAWTC	1 cut(s)	303
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseI	GCWGC	4 cut(s)	28, 46, 236, 341
TspDTI	ATGAA	1 cut(s)	231
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.